mRNA_Ecto-sp13_S_contig12880.2371.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12880.2371.1
Unique NamemRNA_Ecto-sp13_S_contig12880.2371.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12880.2371.1 vs. uniprot
Match: A0A6H5KSV7_9PHAE (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV7_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 8.150e-52
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 1 
Query:    4 QDAYCLAGRLANLNSGAAFEGSLIAALRDYERARKPDTSLVLAKSAFVGAVETLGGAAGGGAVGEAFRDNFFFGMWKAGVAEQIFMDGAIPKV 282
            QDAYCLAGRLA+LNSGAAFEGSLIAALR YER RKPDTSLVLAKSAFVGAVETLGGAAGGGAVGEAFRDNFFFGMWKAGVAEQIFMDGA+PKV
Sbjct:  223 QDAYCLAGRLADLNSGAAFEGSLIAALRYYERVRKPDTSLVLAKSAFVGAVETLGGAAGGGAVGEAFRDNFFFGMWKAGVAEQIFMDGAMPKV 315
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BLAST of mRNA_Ecto-sp13_S_contig12880.2371.1 vs. uniprot
Match: D8LRC6_ECTSI (Monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC6_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 2.470e-50
Identity = 89/93 (95.70%), Postives = 92/93 (98.92%), Query Frame = 1 
Query:    4 QDAYCLAGRLANLNSGAAFEGSLIAALRDYERARKPDTSLVLAKSAFVGAVETLGGAAGGGAVGEAFRDNFFFGMWKAGVAEQIFMDGAIPKV 282
            QDAYCLA RLA+LNSGAAFEGSLIAALRDYERARKPDTSLVLAKSAFVGAVETLGGAAGGGA+GEAFRDNFFFGMWKAGVAEQIFMDGA+PKV
Sbjct:  407 QDAYCLARRLADLNSGAAFEGSLIAALRDYERARKPDTSLVLAKSAFVGAVETLGGAAGGGALGEAFRDNFFFGMWKAGVAEQIFMDGAMPKV 499
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BLAST of mRNA_Ecto-sp13_S_contig12880.2371.1 vs. uniprot
Match: A0A836CJN1_9STRA (Monooxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJN1_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.040e-15
Identity = 49/93 (52.69%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:    4 QDAYCLAGRLANLNSGAAFEGSLIAALRDYERARKPDTSLVLAKSAFVGAVETLGGAAGGGAVGEAFRDNFFFGMWKAGVAEQIFMDGAIPKV 282
            QDAYCLA RL  L  G    GS+  A+R YE  RKP  + +LAKS F+G VETL G      VG   RDNFF  M   GVAE+IF+DG +P+V
Sbjct:  354 QDAYCLAERLQALKRGDY--GSVREAVRSYEATRKPLVASLLAKSVFLGGVETLDGP-----VGAFVRDNFFSVMGTVGVAEKIFVDGGVPRV 439
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BLAST of mRNA_Ecto-sp13_S_contig12880.2371.1 vs. uniprot
Match: A0A7S1UMX4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UMX4_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.200e-13
Identity = 46/93 (49.46%), Postives = 59/93 (63.44%), Query Frame = 1 
Query:    4 QDAYCLAGRLANLNSGAAFEGSLIAALRDYERARKPDTSLVLAKSAFVGAVETLGGAAGGGAVGEAFRDNFFFGMWKAGVAEQIFMDGAIPKV 282
            QDAYCLA  L ++N+GAA   SL AAL  YE  R+P T  +LAKSAF+G +ETL G           R+ FF      GVAE++F+DGA+P+V
Sbjct:  345 QDAYCLAAALRDVNAGAA---SLDAALSKYEAVRRPPTVELLAKSAFLGELETLPGEL------SRLRNGFFSVTGALGVAEKVFVDGAMPRV 428
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12880.2371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KSV7_9PHAE8.150e-5295.70FAD_binding_3 domain-containing protein n=1 Tax=Ec... [more]
D8LRC6_ECTSI2.470e-5095.70Monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A836CJN1_9STRA2.040e-1552.69Monooxygenase n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A7S1UMX4_9STRA1.200e-1349.46Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12880contigEcto-sp13_S_contig12880:106..390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score175.3
Seed ortholog evalue1.4e-41
Seed eggNOG ortholog2880.D8LRC6
Model size285
KEGG rclassRC00389
KEGG koko:K00480
KEGG ReactionR00818,R05632,R06915,R06936,R06939
KEGG Pathwayko00621,ko00624,ko00626,ko01100,ko01120,ko01220,map00621,map00624,map00626,map01100,map01120,map01220
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.FAD binding
EggNOG OGsCOG0654@1,KOG2614@2759
Ec32 ortholog descriptionMonooxygenase
Ec32 orthologEc-06_003030.2
EC1.14.13.1
Cds size285
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462689.1215765-CDS-Ecto-sp13_S_contig12880:105..3901681462689.1215765-CDS-Ecto-sp13_S_contig12880:105..390Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12880 106..390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12880.2371.1prot_Ecto-sp13_S_contig12880.2371.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12880 106..390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12880.2371.1

>prot_Ecto-sp13_S_contig12880.2371.1 ID=prot_Ecto-sp13_S_contig12880.2371.1|Name=mRNA_Ecto-sp13_S_contig12880.2371.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp
QQDAYCLAGRLANLNSGAAFEGSLIAALRDYERARKPDTSLVLAKSAFVG
AVETLGGAAGGGAVGEAFRDNFFFGMWKAGVAEQIFMDGAIPKV*
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mRNA from alignment at Ecto-sp13_S_contig12880:106..390+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12880.2371.1 ID=mRNA_Ecto-sp13_S_contig12880.2371.1|Name=mRNA_Ecto-sp13_S_contig12880.2371.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12880:106..390+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAACAGGACGCGTACTGCCTCGCGGGACGCCTGGCCAACCTCAACAGCGG
GGCTGCCTTCGAGGGAAGCCTCATCGCAGCCCTCCGGGACTACGAGCGAG
CTCGTAAGCCCGACACCAGCCTGGTGCTCGCCAAGAGCGCGTTCGTCGGG
GCGGTGGAAACCCTGGGAGGGGCGGCGGGGGGCGGGGCCGTGGGAGAGGC
GTTTCGCGACAACTTTTTCTTCGGCATGTGGAAGGCCGGGGTCGCGGAGC
AGATTTTCATGGACGGCGCTATCCCCAAGGTTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12880:106..390+

>mRNA_Ecto-sp13_S_contig12880.2371.1 ID=mRNA_Ecto-sp13_S_contig12880.2371.1|Name=mRNA_Ecto-sp13_S_contig12880.2371.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12880:106..390+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAACAGGACGCGTACTGCCTCGCGGGACGCCTGGCCAACCTCAACAGCGG
GGCTGCCTTCGAGGGAAGCCTCATCGCAGCCCTCCGGGACTACGAGCGAG
CTCGTAAGCCCGACACCAGCCTGGTGCTCGCCAAGAGCGCGTTCGTCGGG
GCGGTGGAAACCCTGGGAGGGGCGGCGGGGGGCGGGGCCGTGGGAGAGGC
GTTTCGCGACAACTTTTTCTTCGGCATGTGGAAGGCCGGGGTCGCGGAGC
AGATTTTCATGGACGGCGCTATCCCCAAGGTTTAG
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