mRNA_Ecto-sp13_S_contig1288.2370.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1288.2370.1 vs. uniprot
Match: D7FSW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSW7_ECTSI) HSP 1 Score: 996 bits (2575), Expect = 0.000e+0 Identity = 559/627 (89.15%), Postives = 578/627 (92.19%), Query Frame = 1
Query: 1 VRDVEAQRAKDRENWASLEGENETKLRKHTHLLEDALRTERAENQRLRVARDNRRRSWDVPGGSGEQQPRAPPRRISSGEYEHVHQVGPRRVGSGSWGGLAREHHEQDRQLAAKVRSQDSSLRSLRADVSTLRRRLRTQAETLAKQREENTTVRRAAEQVACVEAEEIARLAVDLERAVRAANAEAEKRRHAEKCLQAAETRLLDAAAGCSPLVLPRPERARSPRASAGRVEAPARREAARVCRKPFGPAASEGCTPPGSPEGDGEKASGSSLPPSRGALGSTIASRGRSAAAVRRKEEGSSAGKGRSKSSPPRGRDAQTKSKRRPWGSSPPPSPPRGGSLLGKPTIASKLNPSRLRRSGDNEAEQKQPPPRRRPGELVGAVKREAAGSRVNGTESRGVQTGTTQDPSNFSVGPREADSAGESTRGGFTTVGRGGSTAPRVDETAEPRLEVASAGRDQGITPTVGGIAAAIRGVDLKATIARELRAAVATTPASAVSSENFNGXXXXXRTPAGGGAP---AGDRPREKALGELEEGDLLNEITRGSGKCAWADVIPDTVAGGLSSAANGGRALKSREVAELESDVQHIFQFFAAKDGRKRLGPSLSRANGAKEWETDFLEDIGETLS 1872
VRDVEAQRAKDRENWA L+GE+ETKL+KHTHLLEDALRTERAENQRLRVARDNRRRSWDVPGGSGEQQPRAPPRR SSGEYEHVHQVGPRRVGSGSWGGLAREHHEQDRQLAAKVRSQDSSLRSLRADVSTLRRRLRTQAETLAKQREENTTVRRAAEQVACVEAEEIARLAVDLERAVRAANAEAEKRRHAEK LQAAETRLLDA AGCSPLVLPRPERARSPRASAGRVEAPA REAARVCRKPFGPAA+EGCTPPGSP GDGE+ASGSSLPPSRGALGSTIASRGRSAAA RRKEEGSSAG PRGRD +TK KRRPWGSSPPPSPPRGGSLLGKPT+ASKLNPSRLRR G+NEAEQKQPPPRRRPGE++GAVKRE+ GS NGTESRGVQTGTTQDPS+ SVGPREADSAGES RGGFTTVGRGGSTAP VDETAEPR+E ASAGRD GITPTVGGIAAAIRGVDLKATIARELRAAVATTPASAVSSENFNGXXXXX GDR EKALGEL+ GDLL+EITRGSGKCAW D+IPDTVAGGLSSAAN GR LKSREVAELESDVQHIFQFFAAKDGRKR G LS+ANGAKE ETDFLE+IG+TLS
Sbjct: 137 VRDVEAQRAKDRENWAMLDGESETKLKKHTHLLEDALRTERAENQRLRVARDNRRRSWDVPGGSGEQQPRAPPRRRSSGEYEHVHQVGPRRVGSGSWGGLAREHHEQDRQLAAKVRSQDSSLRSLRADVSTLRRRLRTQAETLAKQREENTTVRRAAEQVACVEAEEIARLAVDLERAVRAANAEAEKRRHAEKRLQAAETRLLDATAGCSPLVLPRPERARSPRASAGRVEAPALREAARVCRKPFGPAAAEGCTPPGSPNGDGERASGSSLPPSRGALGSTIASRGRSAAAARRKEEGSSAGXXXXXXXXPRGRDTETKGKRRPWGSSPPPSPPRGGSLLGKPTVASKLNPSRLRRPGENEAEQKQPPPRRRPGEVIGAVKRESTGSPGNGTESRGVQTGTTQDPSDCSVGPREADSAGESRRGGFTTVGRGGSTAPHVDETAEPRIEAASAGRDLGITPTVGGIAAAIRGVDLKATIARELRAAVATTPASAVSSENFNGXXXXXXXXXXXXXXXXXGGDRQLEKALGELDGGDLLHEITRGSGKCAWTDLIPDTVAGGLSSAANSGRVLKSREVAELESDVQHIFQFFAAKDGRKRSGSLLSKANGAKEGETDFLEEIGKTLS 763
BLAST of mRNA_Ecto-sp13_S_contig1288.2370.1 vs. uniprot
Match: A0A6H5L8A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8A2_9PHAE) HSP 1 Score: 964 bits (2492), Expect = 0.000e+0 Identity = 545/625 (87.20%), Postives = 559/625 (89.44%), Query Frame = 1
Query: 1 VRDVEAQRAKDRENWASLEGENETKLRKHTHLLEDALRTERAENQRLRVARDNRRRSWDVPGGSGEQQPRAPPRRISSGEYEHVHQVGPRRVGSGSWGGLAREHHEQDRQLAAKVRSQDSSLRSLRADVSTLRRRLRTQAETLAKQREENTTVRRAAEQVACVEAEEIARLAVDLERAVRAANAEAEKRRHAEKCLQAAETRLLDAAAGCSPLVLPRPERARSPRASAGRVEAPARREAARVCRKPFGPAASEGCTPPGSPEGDGEKASGSSLPPSRGALGSTIASRGRSAAAVRRKEEGSSAGKGRSKSSPPRGRDAQTKSKRRPWGSSPPPSPPRGGSLLGKPTIASKLNPSRLRRSGDNEAEQKQPPPRRRPGELVGAVKREAAGSRVNGTESRGVQTGTTQDPSNFSVGPREADSAGESTRGGFTTVGRGGSTAPRVDETAEPRLEVASAGRDQGITPTVGGIAAAIRGVDLKATIARELRAAVATTPASAVSSENFNGXXXXX-RTPAGGGAPAG-DRPREKALGELEEGDLLNEITRGSGKCAWADVIPDTVAGGLSSAANGGRALKSREVAELESDVQHIFQFFAAKDGRKRLGPSLSRANGAKEWETDFLEDIGETL 1869
VRDVEAQRAKDRENWASLEGE+ETKLRKHTHLLEDALR ERAENQRLR ARDNRRRSWDVPGGSGEQQPRA PRR SSGEYEHV QVGPRRVG+GSWGGLAREHHE DRQLAAKVRSQDSSLRSLRADVSTLRRRLRTQAETL KQREENTTVRRAAEQVACVEAEEIARLAVDLERAVRAANAEAEKRRHAEKCLQAAETRLLDA AGCSPLVLPRPERARSPRASAGRVEAPARREAARVCRKPFGP A EGCTPPGSP+G EKASGSSLPPSRGALGSTIASRGRSAAA RRK+E KRRPWGSSPPPSPPRGGS LGKP I SKLNPSRLRR GDNEAEQK+ PPRRRPGEL+GA KREAAGSR NGTESRGVQTGTTQ+PS+FSVGPREADSAGES RG FTTV GSTAPRVD+TA+PR+E ASAGRDQGITP GGIAAAIRGVDLKATIARELRAAVATTPASAVSSENFNG RTPAGG APAG DR REKALGEL+EGDLLNEI+RGSGKCAWA +IPDTVAGGLSSAANGGRALKSREVAELESDVQHIFQFFAAKDGRK G LSRANGAKE ETDFLEDIGETL
Sbjct: 185 VRDVEAQRAKDRENWASLEGESETKLRKHTHLLEDALRAERAENQRLRAARDNRRRSWDVPGGSGEQQPRASPRRRSSGEYEHVDQVGPRRVGNGSWGGLAREHHEHDRQLAAKVRSQDSSLRSLRADVSTLRRRLRTQAETLVKQREENTTVRRAAEQVACVEAEEIARLAVDLERAVRAANAEAEKRRHAEKCLQAAETRLLDATAGCSPLVLPRPERARSPRASAGRVEAPARREAARVCRKPFGPPAVEGCTPPGSPKGGSEKASGSSLPPSRGALGSTIASRGRSAAAARRKDEXXXXXXXXXXXXXXXXXXXXXXXKRRPWGSSPPPSPPRGGSFLGKPAIGSKLNPSRLRRPGDNEAEQKRTPPRRRPGELIGAAKREAAGSRGNGTESRGVQTGTTQNPSDFSVGPREADSAGESRRGVFTTVEWRGSTAPRVDKTAKPRIEAASAGRDQGITPMAGGIAAAIRGVDLKATIARELRAAVATTPASAVSSENFNGGDGGGQRTPAGGSAPAGGDRQREKALGELDEGDLLNEISRGSGKCAWAALIPDTVAGGLSSAANGGRALKSREVAELESDVQHIFQFFAAKDGRKGSGSLLSRANGAKEGETDFLEDIGETL 809 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1288.2370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1288.2370.1 >prot_Ecto-sp13_S_contig1288.2370.1 ID=prot_Ecto-sp13_S_contig1288.2370.1|Name=mRNA_Ecto-sp13_S_contig1288.2370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=625bp VRDVEAQRAKDRENWASLEGENETKLRKHTHLLEDALRTERAENQRLRVAback to top mRNA from alignment at Ecto-sp13_S_contig1288:14519..17814- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1288.2370.1 ID=mRNA_Ecto-sp13_S_contig1288.2370.1|Name=mRNA_Ecto-sp13_S_contig1288.2370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3296bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1288:14519..17814- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1288:14519..17814- >mRNA_Ecto-sp13_S_contig1288.2370.1 ID=mRNA_Ecto-sp13_S_contig1288.2370.1|Name=mRNA_Ecto-sp13_S_contig1288.2370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1875bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1288:14519..17814- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |