mRNA_Ecto-sp13_S_contig10211.238.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10211.238.1
Unique NamemRNA_Ecto-sp13_S_contig10211.238.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10211.238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10211contigEcto-sp13_S_contig10211:4728..5154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size428
Hectar predicted targeting categoryother localisation
Exons1
Cds size342
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462515.7933612-UTR-Ecto-sp13_S_contig10211:4727..48121681462515.7933612-UTR-Ecto-sp13_S_contig10211:4727..4812Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10211 4728..4812 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462515.8106055-CDS-Ecto-sp13_S_contig10211:4812..51541681462515.8106055-CDS-Ecto-sp13_S_contig10211:4812..5154Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10211 4813..5154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10211.238.1prot_Ecto-sp13_S_contig10211.238.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10211 4813..5154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10211.238.1

>prot_Ecto-sp13_S_contig10211.238.1 ID=prot_Ecto-sp13_S_contig10211.238.1|Name=mRNA_Ecto-sp13_S_contig10211.238.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp
MSKSAQESREDTPVLRGDASVDARAYGKSLFAGETLRRSQQARSSGFSIL
PMQAVLSVVIAVKSTRRSRQILSPKEKVQNHSHLLSRLWFVSAERLAPQA
FSTRHPTLHNTSHQ
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mRNA from alignment at Ecto-sp13_S_contig10211:4728..5154+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10211.238.1 ID=mRNA_Ecto-sp13_S_contig10211.238.1|Name=mRNA_Ecto-sp13_S_contig10211.238.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=427bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10211:4728..5154+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCGGTGATAAGAGGAGTGGAACCGCCGCCTCCCCGTACATGGATGGATC
CTTCGTGACAATGATCGGTTGAGGTGTGCACAGACATGAGCAAGTCCGCA
CAGGAATCACGTGAGGATACGCCAGTCCTTAGAGGGGACGCGAGCGTGGA
CGCGAGAGCCTACGGTAAGAGCCTGTTTGCTGGCGAAACACTTCGCCGCT
CGCAGCAAGCACGGTCGTCTGGTTTTTCTATTCTACCAATGCAGGCTGTG
TTGTCGGTAGTAATTGCGGTCAAGAGCACACGAAGATCACGTCAAATTTT
GTCCCCTAAAGAGAAGGTGCAAAACCACTCGCACCTACTCAGTAGGCTTT
GGTTCGTCAGTGCAGAAAGGTTGGCTCCACAAGCCTTCTCGACAAGACAC
CCCACATTGCACAACACCTCTCACCAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10211:4728..5154+

>mRNA_Ecto-sp13_S_contig10211.238.1 ID=mRNA_Ecto-sp13_S_contig10211.238.1|Name=mRNA_Ecto-sp13_S_contig10211.238.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10211:4728..5154+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCAAGTCCGCACAGGAATCACGTGAGGATACGCCAGTCCTTAGAGG
GGACGCGAGCGTGGACGCGAGAGCCTACGGTAAGAGCCTGTTTGCTGGCG
AAACACTTCGCCGCTCGCAGCAAGCACGGTCGTCTGGTTTTTCTATTCTA
CCAATGCAGGCTGTGTTGTCGGTAGTAATTGCGGTCAAGAGCACACGAAG
ATCACGTCAAATTTTGTCCCCTAAAGAGAAGGTGCAAAACCACTCGCACC
TACTCAGTAGGCTTTGGTTCGTCAGTGCAGAAAGGTTGGCTCCACAAGCC
TTCTCGACAAGACACCCCACATTGCACAACACCTCTCACCAA
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