mRNA_Ecto-sp13_S_contig1285.2350.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1285.2350.1
Unique NamemRNA_Ecto-sp13_S_contig1285.2350.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1285.2350.1 vs. uniprot
Match: A0A6H5KRF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF5_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 1.170e-51
Identity = 83/106 (78.30%), Postives = 87/106 (82.08%), Query Frame = 1 
Query:    1 QHSVTGEWAYVYGGGLSVPPVVAVSPTPMVYPHGVVFTPPPAXXXXXXPPLPAKKKDSAGGQQDGNEKDEKTEKGKGWWETMYDEDGDRYWEHTVTKKTTYKDPYY 318
            QHSVTGEWAYVYGGGLS PPVVAVSPT +VYPHGVV  P         PPLPAKKKD AGGQ+D +EKDEK EKGKGWWET  D+DGDRYWEHTVTKK TYKDPYY
Sbjct:   17 QHSVTGEWAYVYGGGLSAPPVVAVSPTSVVYPHGVVVMPXXVYAAAPNPPLPAKKKDVAGGQKDCDEKDEKKEKGKGWWETKSDKDGDRYWEHTVTKKITYKDPYY 122
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BLAST of mRNA_Ecto-sp13_S_contig1285.2350.1 vs. uniprot
Match: D8LLG2_ECTSI (WW domain-containing protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LLG2_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 1.580e-51
Identity = 83/106 (78.30%), Postives = 86/106 (81.13%), Query Frame = 1 
Query:    1 QHSVTGEWAYVYGGGLSVPPVVAVSPTPMVYPHGVVFTPPPAXXXXXXPPLPAKKKDSAGGQQDGNEKDEKTEKGKGWWETMYDEDGDRYWEHTVTKKTTYKDPYY 318
            QHSVTGEWAYVYGGGLS PPVVAV PTPMV PHGVVFTPPP       PPLP KKKD       G+++DEK EKGKGWWET YDEDGDRYWEHTVTKKTTYKDPYY
Sbjct:   67 QHSVTGEWAYVYGGGLSAPPVVAVGPTPMVSPHGVVFTPPPVYAAAPNPPLPTKKKD-------GDKQDEKKEKGKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY 165
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BLAST of mRNA_Ecto-sp13_S_contig1285.2350.1 vs. uniprot
Match: D8LLG0_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG0_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 3.420e-41
Identity = 79/106 (74.53%), Postives = 80/106 (75.47%), Query Frame = 1 
Query:    1 QHSVTGEWAYVYGGGLSVPPVVAVSPTPMVYPHGVVFTPPPAXXXXXXPPLPAKKKDSAGGQQDGNEKDEKTEKGKGWWETMYDEDGDRYWEHTVTKKTTYKDPYY 318
            QH+VTGEWAYVYGGGLS PPVVAVSPTPM  PHGVVFTPP  XXXXXX PLP K                  EKGKGWWET YDEDGDRYWEHTVTKKTTYKDPYY
Sbjct:   67 QHNVTGEWAYVYGGGLSAPPVVAVSPTPMACPHGVVFTPPXXXXXXXXXPLPTKXXXXXXXXXX-------XEKGKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY 165
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BLAST of mRNA_Ecto-sp13_S_contig1285.2350.1 vs. uniprot
Match: D8LLF4_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLF4_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 5.050e-32
Identity = 66/110 (60.00%), Postives = 70/110 (63.64%), Query Frame = 1 
Query:    1 QHSVTGEWAYVYGGGLSVPPVVAVSPTPMVYPHGVVFTPPPAXXXXXXPPL----PAKKKDSAGGQQDGNEKDEKTEKGKGWWETMYDEDGDRYWEHTVTKKTTYKDPYY 318
            QHS TGEW + YGGG  VPPV  V+P+PM YP G VFTP P       P      P KKK             EK EKGKGWWET YDE+GDRYWEHTVTKKTTYKDPYY
Sbjct:   51 QHSKTGEWHFGYGGGF-VPPVGTVNPSPMGYPGGPVFTPSPVPGGTLFPVAVAGPPGKKK-------------EKKEKGKGWWETKYDEEGDRYWEHTVTKKTTYKDPYY 146
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BLAST of mRNA_Ecto-sp13_S_contig1285.2350.1 vs. uniprot
Match: D8LLF3_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLF3_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.800e-27
Identity = 62/110 (56.36%), Postives = 65/110 (59.09%), Query Frame = 1 
Query:    1 QHSVTGEWAYVYGGGLSVPPVVAVSPTPMVYPHGVVFTPPPAXXXXXXP----PLPAKKKDSAGGQQDGNEKDEKTEKGKGWWETMYDEDGDRYWEHTVTKKTTYKDPYY 318
            QHS+TGEW Y  GGGL V PV  V+P+PM YP G VFTP P       P    P P K                    GKGWWET YDEDGDRYWEHTVTKKTTYKDPYY
Sbjct:   59 QHSITGEWTYGCGGGL-VSPVGTVNPSPMGYPGGPVFTPSPVPGGALYPFAVAPHPKKXXXXXXXXXXXX--------GKGWWETKYDEDGDRYWEHTVTKKTTYKDPYY 159
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1285.2350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KRF5_9PHAE1.170e-5178.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLG2_ECTSI1.580e-5178.30WW domain-containing protein n=4 Tax=Ectocarpus Ta... [more]
D8LLG0_ECTSI3.420e-4174.53WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
D8LLF4_ECTSI5.050e-3260.00WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
D8LLF3_ECTSI1.800e-2756.36WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1285contigEcto-sp13_S_contig1285:17544..17864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size321
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462687.7485816-CDS-Ecto-sp13_S_contig1285:17543..178641681462687.7485816-CDS-Ecto-sp13_S_contig1285:17543..17864Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1285 17544..17864 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1285.2350.1prot_Ecto-sp13_S_contig1285.2350.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1285 17544..17864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1285.2350.1

>prot_Ecto-sp13_S_contig1285.2350.1 ID=prot_Ecto-sp13_S_contig1285.2350.1|Name=mRNA_Ecto-sp13_S_contig1285.2350.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
QHSVTGEWAYVYGGGLSVPPVVAVSPTPMVYPHGVVFTPPPAYAAAPSPP
LPAKKKDSAGGQQDGNEKDEKTEKGKGWWETMYDEDGDRYWEHTVTKKTT
YKDPYY*
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mRNA from alignment at Ecto-sp13_S_contig1285:17544..17864-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1285.2350.1 ID=mRNA_Ecto-sp13_S_contig1285.2350.1|Name=mRNA_Ecto-sp13_S_contig1285.2350.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1285:17544..17864- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCACAGCGTGACGGGCGAGTGGGCCTACGTCTACGGTGGGGGCCTCAG
CGTCCCTCCCGTTGTGGCGGTCAGCCCTACACCCATGGTCTATCCCCACG
GCGTGGTCTTCACGCCTCCGCCTGCCTACGCCGCCGCCCCCAGCCCGCCC
CTCCCCGCCAAGAAGAAGGACAGTGCTGGCGGACAGCAGGATGGCAACGA
AAAGGACGAGAAGACGGAGAAGGGCAAGGGGTGGTGGGAGACGATGTACG
ACGAGGACGGGGACCGGTACTGGGAGCACACGGTGACGAAGAAGACCACG
TACAAGGACCCCTACTACTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1285:17544..17864-

>mRNA_Ecto-sp13_S_contig1285.2350.1 ID=mRNA_Ecto-sp13_S_contig1285.2350.1|Name=mRNA_Ecto-sp13_S_contig1285.2350.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1285:17544..17864- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCACAGCGTGACGGGCGAGTGGGCCTACGTCTACGGTGGGGGCCTCAG
CGTCCCTCCCGTTGTGGCGGTCAGCCCTACACCCATGGTCTATCCCCACG
GCGTGGTCTTCACGCCTCCGCCTGCCTACGCCGCCGCCCCCAGCCCGCCC
CTCCCCGCCAAGAAGAAGGACAGTGCTGGCGGACAGCAGGATGGCAACGA
AAAGGACGAGAAGACGGAGAAGGGCAAGGGGTGGTGGGAGACGATGTACG
ACGAGGACGGGGACCGGTACTGGGAGCACACGGTGACGAAGAAGACCACG
TACAAGGACCCCTACTACTGA
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