mRNA_Ecto-sp13_S_contig10211.237.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10211.237.1
Unique NamemRNA_Ecto-sp13_S_contig10211.237.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10211.237.1 vs. uniprot
Match: D7G6U6_ECTSI (Cytosine-C5 specific DNA methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U6_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 3.400e-52
Identity = 93/100 (93.00%), Postives = 95/100 (95.00%), Query Frame = 3 
Query:  537 LLPLSGYLDPSMYGEAAVPLLLSPEACSHANPSLRFDVVTLQSTETTTFTKGYRKHAERAGPVVLLTDDGERRVSGEKLGRFPSCLDLGPEAKEVRWFSD 836
            L PLS YLDPS+YGEAAVPLLLSP+ACSHANPSLRFDVVTLQSTETTTFTKGYRKHA RAGPVVLLTDDGERRVSGEKLGRFPS LDLGPE KEVRWFSD
Sbjct:  245 LRPLSKYLDPSLYGEAAVPLLLSPKACSHANPSLRFDVVTLQSTETTTFTKGYRKHAGRAGPVVLLTDDGERRVSGEKLGRFPSGLDLGPEGKEVRWFSD 344
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BLAST of mRNA_Ecto-sp13_S_contig10211.237.1 vs. uniprot
Match: A0A6H5KAF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF5_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 3.690e-46
Identity = 83/92 (90.22%), Postives = 86/92 (93.48%), Query Frame = 3 
Query:  561 DPSMYGEAAVPLLLSPEACSHANPSLRFDVVTLQSTETTTFTKGYRKHAERAGPVVLLTDDGERRVSGEKLGRFPSCLDLGPEAKEVRWFSD 836
            DPS+ GEAAVPLLLSP+ACSHANPSLRFDVVTLQST+TTTFTKGYRKHA RAGPVVLLTDDGERRVSGEKLGRFPS LDL  E KEVRWFSD
Sbjct:   76 DPSLCGEAAVPLLLSPKACSHANPSLRFDVVTLQSTKTTTFTKGYRKHAGRAGPVVLLTDDGERRVSGEKLGRFPSGLDLKTEGKEVRWFSD 167
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BLAST of mRNA_Ecto-sp13_S_contig10211.237.1 vs. uniprot
Match: D7G6U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U4_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 9.280e-24
Identity = 57/84 (67.86%), Postives = 61/84 (72.62%), Query Frame = 3 
Query:  672 TTTFTKGYRKHAERAGPVVLLTDDGERRVSGEKLGRFPSCLDLGPEAKEVRWFSD--IGRCPGCTGSLKLLISRRPVPHVLSVV 917
            TTTFTKGYRKHA RAGPVVLLTDDGERRVS E+LG FPS LDLGPE KEVRWFSD  + R  G   +       RP PHV  V+
Sbjct:   11 TTTFTKGYRKHAGRAGPVVLLTDDGERRVSEEELGPFPSGLDLGPEGKEVRWFSDREMLRLHGFPEAFDF----RPSPHVSVVL 90
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BLAST of mRNA_Ecto-sp13_S_contig10211.237.1 vs. uniprot
Match: A0A6H5KE46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE46_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 6.390e-10
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:  424 VNHSRLRYYCLARRRNADCKGEATDIKESLPQDMAAVP 537
            + +SRLRYYCLARRRNAD K EATD+KESLPQDMAAVP
Sbjct:  116 IPNSRLRYYCLARRRNADGKREATDVKESLPQDMAAVP 153
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10211.237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G6U6_ECTSI3.400e-5293.00Cytosine-C5 specific DNA methyltransferase n=1 Tax... [more]
A0A6H5KAF5_9PHAE3.690e-4690.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6U4_ECTSI9.280e-2467.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KE46_9PHAE6.390e-1084.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10211contigEcto-sp13_S_contig10211:4044..5711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score65.9
Seed ortholog evalue3.1e-08
Seed eggNOG ortholog2880.D7G6U6
Model size1296
KEGG rclassRC00003,RC00332
KEGG koko:K00558,ko:K15336
KEGG ReactionR04858
KEGG Pathwayko00270,ko01100,ko05206,map00270,map01100,map05206
KEGG ModuleM00035
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.tRNA methyltransferase activity
EggNOG OGsCOG0270@1,KOG0919@2759
Ec32 ortholog descriptiontRNA (cytosine-5-)-methyltransferase pseudogene
Ec32 orthologEc-01_012230.1
EC2.1.1.204,2.1.1.37
Cds size735
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02048,ko03016,ko03032,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462515.7400835-UTR-Ecto-sp13_S_contig10211:4043..46021681462515.7400835-UTR-Ecto-sp13_S_contig10211:4043..4602Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10211 4044..4602 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462515.7534678-CDS-Ecto-sp13_S_contig10211:4602..47771681462515.7534678-CDS-Ecto-sp13_S_contig10211:4602..4777Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10211 4603..4777 -
1681462515.7647486-CDS-Ecto-sp13_S_contig10211:5151..57111681462515.7647486-CDS-Ecto-sp13_S_contig10211:5151..5711Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10211 5152..5711 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10211.237.1prot_Ecto-sp13_S_contig10211.237.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10211 4603..5711 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10211.237.1

>prot_Ecto-sp13_S_contig10211.237.1 ID=prot_Ecto-sp13_S_contig10211.237.1|Name=mRNA_Ecto-sp13_S_contig10211.237.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=245bp
QTPRGGLVFQRRCQATKTQSRRQTPRGGLVLQRRYQATKTQPRWQTPGRS
GGSFFSINIQKGDIPRGEPHKVGHPHDSSKENKRASVEDGKKGGQHVGSL
GPSHYTITHPSCQTPTTGLVRNALRHRCTCSLDASALTRCDVNHSRLRYY
CLARRRNADCKGEATDIKESLPQDMAAVPCFRSPGTWIHPCTGRRRFHSS
YHRKPVHTQTRPFVSTWSPYNQPRRRLSPKATVNTRNARGRSCC*
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mRNA from alignment at Ecto-sp13_S_contig10211:4044..5711-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10211.237.1 ID=mRNA_Ecto-sp13_S_contig10211.237.1|Name=mRNA_Ecto-sp13_S_contig10211.237.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1668bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10211:4044..5711- (Ectocarpus species13 EcNAP12_S_4_19m)
CAAACACCGAGGGGGGGGCTTGTTTTTCAACGTCGTTGCCAAGCGACGAA
AACCCAATCCCGACGGCAAACACCGAGGGGGGGGCTTGTTTTACAACGTC
GTTACCAAGCGACGAAAACCCAACCCCGATGGCAAACACCGGGGAGGAGT
GGGGGGAGTTTTTTTTCCATAAACATTCAAAAGGGTGATATACCCCGGGG
GGAACCGCACAAAGTAGGCCATCCACACGACTCCAGCAAGGAAAACAAAA
GAGCGAGCGTTGAGGACGGAAAGAAAGGAGGACAACACGTGGGGAGCCTT
GGCCCTTCCCACTACACCATAACGCACCCGTCTTGCCAAACGCCGACCAC
GGGTCTCGTCCGAAATGCGCTAAGACACCGATGTACATGTAGTCTGGACG
CGTCAGCTCTGACGCGTTGTGATGTTAACCATAGCCGTTTGCGGTACTAC
TGCCTTGCGCGGAGGAGAAATGCCGACTGCAAGGGGGAGGCCACCGACAT
CAAAGAGTCGCTTCCCCAGGACATGGCAGCCGTGCCCTGCTTCCGCTCTC
CGGGTACTTGGTGAGAGGTGTTGTGCAATGTGGGGTGTCTTGTCGAGAAG
GCTTGTGGAGCCAACCTTTCTGCACTGACGAACCAAAGCCTACTGAGTAG
GTGCGAGTGGTTTTGCACCTTCTCTTTAGGGGACAAAATTTGACGTGATC
TTCGTGTGCTCTTGACCGCAATTACTACCGACAACACAGCCTGCATTGGT
AGAATAGAAAAACCAGACGACCGTGCTTGCTGCGAGCGGCGAAGTGTTTC
GCCAGCAAACAGGCTCTTACCGTAGGCTCTCGCGTCCACGCTCGCGTCCC
CTCTAAGGACTGGCGTATCCTCACGTGATTCCTGTGCGGACTTGCTCATG
TCTGTGCACACCTCAACCGATCATTGTCACGAAGGATCCATCCATGTACG
GGGAGGCGGCGGTTCCACTCCTCTTATCACCGGAAGCCTGTTCACACGCA
AACCCGTCCCTTCGTTTCGACGTGGTCACCCTACAATCAACCGAGACGAC
GACTTTCACCAAAGGCTACCGTAAACACGCGGAACGCGCGGGGCCGGTCG
TGCTGCTGACGGATGACGGTGAACGGCGGGTCAGCGGGGAGAAGCTAGGT
CGTTTCCCATCCTGTTTGGACCTGGGGCCCGAGGCGAAGGAGGTTCGATG
GTTCTCGGATATAGGGAGATGCCCCGGTTGCACGGGTTCACTGAAGCTTT
TGATTTCCCGACGGCCCGTACCCCACGTCCTCAGCGTTGTGCGTTCGTAG
GCAACAGCGTCAACGTAAAGGTGGCGACACTGTTGCTAGAGTTTATGCTA
TTTGGAGGAAACGCGCGAGGAGACTGGGAGTAACGATTCAGGGCCGAATA
GCGGCAGGTGTCGACGGTGTAAATCGTGCCCATGGCATGCGCCGTAGTCA
CTGGGGGCGACTACCCCTCAACTCATGTTTCGTGTGTGCGTCTTGGGCAC
GGGGTGTAGTCAGGCAGAAAGGATGGATATGTTCCGAGAGGAGAAATAGT
GTACCAAAGTACTGTCCGAACACGGTGACGCGGGCGGTGGAGCATAGTAA
CAGAAGTACACGTACCTGAGGAACGCAATAAAAGCAGGAGGGCGCGCCCA
CAACGCACTTCTTCTTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10211:4044..5711-

>mRNA_Ecto-sp13_S_contig10211.237.1 ID=mRNA_Ecto-sp13_S_contig10211.237.1|Name=mRNA_Ecto-sp13_S_contig10211.237.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=735bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10211:4044..5711- (Ectocarpus species13 EcNAP12_S_4_19m)
CAAACACCGAGGGGGGGGCTTGTTTTTCAACGTCGTTGCCAAGCGACGAA
AACCCAATCCCGACGGCAAACACCGAGGGGGGGGCTTGTTTTACAACGTC
GTTACCAAGCGACGAAAACCCAACCCCGATGGCAAACACCGGGGAGGAGT
GGGGGGAGTTTTTTTTCCATAAACATTCAAAAGGGTGATATACCCCGGGG
GGAACCGCACAAAGTAGGCCATCCACACGACTCCAGCAAGGAAAACAAAA
GAGCGAGCGTTGAGGACGGAAAGAAAGGAGGACAACACGTGGGGAGCCTT
GGCCCTTCCCACTACACCATAACGCACCCGTCTTGCCAAACGCCGACCAC
GGGTCTCGTCCGAAATGCGCTAAGACACCGATGTACATGTAGTCTGGACG
CGTCAGCTCTGACGCGTTGTGATGTTAACCATAGCCGTTTGCGGTACTAC
TGCCTTGCGCGGAGGAGAAATGCCGACTGCAAGGGGGAGGCCACCGACAT
CAAAGAGTCGCTTCCCCAGGACATGGCAGCCGTGCCCTGCTTCCGCTCTC
CGGGTACTTGGATCCATCCATGTACGGGGAGGCGGCGGTTCCACTCCTCT
TATCACCGGAAGCCTGTTCACACGCAAACCCGTCCCTTCGTTTCGACGTG
GTCACCCTACAATCAACCGAGACGACGACTTTCACCAAAGGCTACCGTAA
ACACGCGGAACGCGCGGGGCCGGTCGTGCTGCTGA
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