prot_Ecto-sp13_S_contig12823.2331.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12823.2331.1
Unique Nameprot_Ecto-sp13_S_contig12823.2331.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length164
Homology
BLAST of mRNA_Ecto-sp13_S_contig12823.2331.1 vs. uniprot
Match: D8LIK9_ECTSI (Beta strand repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK9_ECTSI)

HSP 1 Score: 323 bits (828), Expect = 1.040e-99
Identity = 154/163 (94.48%), Postives = 161/163 (98.77%), Query Frame = 0
Query:    1 MVWASVLDPDMDQDKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVLFFQIRRKASKLWRGERTPREEKSDIKGSWGEACGIFCVLVRENFIGCVKESMHGPRQKPRSSFTLAVSDRLPGIKEEEQRDPEAAEGIIGRRPVRTSKFPIVKHGRGGSGDVETG 163
            MVWASVLDPDMD DKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIV+FFQIR KASKLWRGERTPRE+KSDIKGSWGE+CGIFCVLVRENFIGCVKES+HGPR+KPRSSFTLAVSDRLPGIKEEE+RDPEAAEGIIGR+PVRTSKFPIVKHGRGGSGDVETG
Sbjct: 1345 MVWASVLDPDMDADKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVIFFQIRHKASKLWRGERTPREQKSDIKGSWGESCGIFCVLVRENFIGCVKESVHGPRRKPRSSFTLAVSDRLPGIKEEEKRDPEAAEGIIGRKPVRTSKFPIVKHGRGGSGDVETG 1507          
BLAST of mRNA_Ecto-sp13_S_contig12823.2331.1 vs. uniprot
Match: A0A6H5JTC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC8_9PHAE)

HSP 1 Score: 302 bits (773), Expect = 1.820e-98
Identity = 147/164 (89.63%), Postives = 154/164 (93.90%), Query Frame = 0
Query:    1 MVWASVLDPDMDQDKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVLFFQIRRKASKLWRGERTPREEKSDIKGSWGEACGIFCVLVRENFIGCVKESMHGPRQKPRSSFTLAVSDRLPGIKEEEQRDPEAAEGIIGRRPVRTSKFPIVKHGR-GGSGDVETG 163
            MVWAS LDPD D DKRKLD IYAGCML+QTLGI LLTIPIYADTF+VLF QIR+KASKLWRGERTPR EKSDIKGSWGEACGIFCVLVRENFIGCVKES+ GPR+KPRSSFTLAVSDRLPGIKEEE RDPEAAEGIIGR+PVRTSKFPIVKHGR GGSGD+ETG
Sbjct:  171 MVWASALDPDEDGDKRKLDNIYAGCMLVQTLGIILLTIPIYADTFVVLFSQIRQKASKLWRGERTPRAEKSDIKGSWGEACGIFCVLVRENFIGCVKESVQGPRRKPRSSFTLAVSDRLPGIKEEENRDPEAAEGIIGRKPVRTSKFPIVKHGRAGGSGDLETG 334          
BLAST of mRNA_Ecto-sp13_S_contig12823.2331.1 vs. uniprot
Match: D7G3P1_ECTSI (Similar to Mucin-1 (MUC-1) (Polymorphic epithelial mucin) (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P1_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.080e-23
Identity = 61/149 (40.94%), Postives = 82/149 (55.03%), Query Frame = 0
Query:    1 MVWASVLDPDMDQDKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVLFFQIRRKASKLWRGERTPREEKSDIKGSWGEACGIFCVLVRENFIGCVKESMHGPRQKP--------RSSFTLAVSDRLPGIKEEEQRDPEAAEGIIGRRP 141
            M +A+ L+PD D D  +L+ +YAG +L+QTL I    IP+Y D FI +   + +K S+L +G  T  + K+ IKGS  E   IFC LVRENF+GCVK +  GP   P        RSS  L      P  +E +  D E A    G+RP
Sbjct:  888 MFYATFLEPDDDDDADRLELVYAGALLVQTLAILFFVIPLYLDAFITIVGTLCKKCSQLAKG--TTSKFKAPIKGSSSETASIFCALVRENFVGCVKSTWRGPTYNPVQTELQRRRSSLLL------PEFQEGQSSDEETANPHFGKRP 1028          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12823.2331.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LIK9_ECTSI1.040e-9994.48Beta strand repeat-containing protein n=1 Tax=Ecto... [more]
A0A6H5JTC8_9PHAE1.820e-9889.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3P1_ECTSI1.080e-2340.94Similar to Mucin-1 (MUC-1) (Polymorphic epithelial... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 51..163
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..50
NoneNo IPR availableTMHMMTMhelixcoord: 20..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12823contigEcto-sp13_S_contig12823:153..3183 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12823.2331.1mRNA_Ecto-sp13_S_contig12823.2331.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12823 123..3183 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12823.2331.1 ID=prot_Ecto-sp13_S_contig12823.2331.1|Name=mRNA_Ecto-sp13_S_contig12823.2331.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=164bp
MVWASVLDPDMDQDKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVLFF
QIRRKASKLWRGERTPREEKSDIKGSWGEACGIFCVLVRENFIGCVKESM
HGPRQKPRSSFTLAVSDRLPGIKEEEQRDPEAAEGIIGRRPVRTSKFPIV
KHGRGGSGDVETG*
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