mRNA_Ecto-sp13_S_contig12816.2328.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12816.2328.1
Unique NamemRNA_Ecto-sp13_S_contig12816.2328.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12816.2328.1 vs. uniprot
Match: D8LFW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFW2_ECTSI)

HSP 1 Score: 298 bits (763), Expect = 1.150e-100
Identity = 158/204 (77.45%), Postives = 165/204 (80.88%), Query Frame = 1 
Query:    1 MGGGEKSEKLKGSIGSSTSRDGSNKPYSNIIGRNNSRNDNDNGTVSDKSDKMSGDKDTKKDGKGTRNKGFEDDHNVPAGSWVQHLHKQGYMFWRNNHTGECTRDLFFGPWGFYPTTQYRELVPASFAPILVDTNEEKASATVDKGKGKGSKKDXXXXXXXXPATWFP------QPWEEIYHPVTGKKHWRHRATGEERQKDPLW 594
            MGGGEKS K KG+IG S+S DGSNKP SNI G++NSRNDNDNG             +TKK+GKG RNKGFEDD NVPAGSWVQHLHKQGYMFWRNNHTGECTRDLFFGPWG YPT QYRELVPASFAP  VD NEE ASATVDKGKGKGSKKDXXXX    PA WF       QPWEEIYHPVTG+KHWRHRATGEERQKDPLW
Sbjct:    1 MGGGEKSVKRKGTIGRSSSGDGSNKPSSNISGQHNSRNDNDNGXXXXXXXXXXXXXNTKKNGKGCRNKGFEDDDNVPAGSWVQHLHKQGYMFWRNNHTGECTRDLFFGPWGSYPTVQYRELVPASFAPTFVDKNEENASATVDKGKGKGSKKDXXXXQGPPPAIWFVSLLPELQPWEEIYHPVTGEKHWRHRATGEERQKDPLW 204
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12816.2328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFW2_ECTSI1.150e-10077.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12816contigEcto-sp13_S_contig12816:1654..3634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size597
Hectar predicted targeting categoryother localisation
Exons4
Cds size597
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462685.9000046-CDS-Ecto-sp13_S_contig12816:1653..19311681462685.9000046-CDS-Ecto-sp13_S_contig12816:1653..1931Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12816 1654..1931 +
1681462685.9083116-CDS-Ecto-sp13_S_contig12816:2395..26151681462685.9083116-CDS-Ecto-sp13_S_contig12816:2395..2615Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12816 2396..2615 +
1681462685.9162858-CDS-Ecto-sp13_S_contig12816:2867..29301681462685.9162858-CDS-Ecto-sp13_S_contig12816:2867..2930Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12816 2868..2930 +
1681462685.9241571-CDS-Ecto-sp13_S_contig12816:3598..36341681462685.9241571-CDS-Ecto-sp13_S_contig12816:3598..3634Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12816 3599..3634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12816.2328.1prot_Ecto-sp13_S_contig12816.2328.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12816 1654..3634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12816.2328.1

>prot_Ecto-sp13_S_contig12816.2328.1 ID=prot_Ecto-sp13_S_contig12816.2328.1|Name=mRNA_Ecto-sp13_S_contig12816.2328.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=199bp
MGGGEKSEKLKGSIGSSTSRDGSNKPYSNIIGRNNSRNDNDNGTVSDKSD
KMSGDKDTKKDGKGTRNKGFEDDHNVPAGSWVQHLHKQGYMFWRNNHTGE
CTRDLFFGPWGFYPTTQYRELVPASFAPILVDTNEEKASATVDKGKGKGS
KKDDEEQQAPPPATWFPQPWEEIYHPVTGKKHWRHRATGEERQKDPLW*
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mRNA from alignment at Ecto-sp13_S_contig12816:1654..3634+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12816.2328.1 ID=mRNA_Ecto-sp13_S_contig12816.2328.1|Name=mRNA_Ecto-sp13_S_contig12816.2328.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1981bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12816:1654..3634+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGGTGGCGAGAAAAGCGAGAAACTAAAGGGCAGCATCGGCAGCAG
CACTAGCAGGGACGGCAGCAACAAGCCATACAGCAACATTATCGGCCGAA
ATAATAGTAGAAACGACAATGACAACGGCACCGTGAGTGACAAGAGTGAC
AAGATGAGTGGCGACAAGGACACGAAGAAGGACGGCAAGGGTACCAGAAA
CAAGGGCTTCGAGGACGACCACAACGTTCCGGCCGGCTCGTGGGTCCAGC
ACCTACACAAACAAGGGTACATGTTCTGGTGAGCACACACGGTCACGGCG
TCCTCACCCGGGAGGTCTACGCGGGACCCTTTCCGTCCGGTGAAATATGC
ATGACCTAGGTACACAGACCGGTATTTTTCACCGCCCCCGCTGTTTAGGT
GACATTGTTTTTCTGTACCCTTCCCAGCGAACCGTCAAGTGTAGTGCATT
TCACTCGATATTTTCCTTGTTTCGATGGCATTGTCGGTGTACCTGTTCAA
CCCGCTACAGTGCGATGGTCACGGTTGTACAACCGACCCGGCTTCCACGC
ACGATAAAGAATTATCAACACGGGTGACGGTTGTCGAATTCTCTCCTCAA
GGATGTCTGCCAAAACCTACCAGGCTTTTAGCCGCGCCGCATCATGTTTA
TCCTGGTTTCCGCTCTCTCCTGGCTGTTCCCTTGGACATCTTGGTCTATA
TCCGCTGTCCTGCTTCCTTTCTTTGCATTGCTGGGCATACAGGCGCAACA
ATCACACAGGAGAGTGCACCCGCGATCTCTTCTTCGGCCCTTGGGGATTC
TACCCGACGACGCAGTACCGGGAACTCGTCCCTGCTTCTTTCGCGCCGAT
ACTCGTCGACACGAATGAGGAAAAAGCATCCGCAACAGTCGACAAGGGCA
AGGGCAAGGGTAGCAAGAAGGACGACGAGGAGCAGCAAGCGCCGCCCCCC
GCGACCTGGTTTGTAAGTCTACTGCACACCGCGTTCACAACGTCAGAGGC
GGTCTTCAACGAGATTCGTGTTTCCCTTAACCTTTCTTGGTCCTGTTTTT
TCGCCTGAGTCCACGGTTTGGTCCCGGGCGCCAGAAGTCCCTCGTTGTAG
TGACTATTTTTCGTTCCTTGTACCGCTCCTGATCCCCCCCTATCCCCTCC
TGCTGCCCGTCGAAATCGACGCCGAAAAACCGCGTTGCCCTCGGGCGACG
AAACGGATGTGCAGCCCCAACCGTGGGAGGAGATCTACCATCCGGTGACC
GGAAAGAAGCACTGGCGCCACCGCGCCGTGAGTGGTCCCGTCTTTTGGTC
TGTTGCTCGCGCTATTATATGGCATTCATGAAGATGTTACCCTCTTCGGG
CTTGTGCGTACTTGTGCGTGCTTTATCGGCGTGCTACATGCCGTGGATTT
CCCTGACACAACGCGTTCGCTTGTTCTGTGGAGGACGGACGTACTTGTTT
CCCCCAGTAGTACTACACTTGAGTCCGACTTCGCGCCTCAGCGGTTGACT
GGATGTTTCTATCTACCCCAGGCGCTACCTAGAGTGATCCGGGCAAAGTT
GGTGGGGCTCGATCGAATGTGTTCCGCTCCCCTGTCCTCGCCCAGACGTT
CGGGATTGCCCCACAAATCTATAGCGAATCTCATCCACCTCGTATGCGAC
GATTTTTCTGGGTCTGTCTTTAGGAAGTTTGCCCGTGGCCAGGGAAGTCG
TGTCAGTACTGATGTCAGAGGGTACCTCTGAGTGCAGGAGCGGTTTTTGG
CGTGCAGACAGCGCATTGCAAAACGAAGATGGCAACATTGACAACATCTT
CCAAGAACAACAATTCACAAAAACGATCCACCCGGCAACCCGACACCAGT
TTTACAAAGCAACACCTATCATATTGCTATCCGTGCATATACCCCCTGTT
CCCCATCGCGCCCACCCACTCCCTATCGGTTTTGGCTGTTTTCAGACTGG
GGAGGAGAGGCAAAAAGATCCGCTCTGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12816:1654..3634+

>mRNA_Ecto-sp13_S_contig12816.2328.1 ID=mRNA_Ecto-sp13_S_contig12816.2328.1|Name=mRNA_Ecto-sp13_S_contig12816.2328.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=597bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12816:1654..3634+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGGTGGCGAGAAAAGCGAGAAACTAAAGGGCAGCATCGGCAGCAG
CACTAGCAGGGACGGCAGCAACAAGCCATACAGCAACATTATCGGCCGAA
ATAATAGTAGAAACGACAATGACAACGGCACCGTGAGTGACAAGAGTGAC
AAGATGAGTGGCGACAAGGACACGAAGAAGGACGGCAAGGGTACCAGAAA
CAAGGGCTTCGAGGACGACCACAACGTTCCGGCCGGCTCGTGGGTCCAGC
ACCTACACAAACAAGGGTACATGTTCTGGCGCAACAATCACACAGGAGAG
TGCACCCGCGATCTCTTCTTCGGCCCTTGGGGATTCTACCCGACGACGCA
GTACCGGGAACTCGTCCCTGCTTCTTTCGCGCCGATACTCGTCGACACGA
ATGAGGAAAAAGCATCCGCAACAGTCGACAAGGGCAAGGGCAAGGGTAGC
AAGAAGGACGACGAGGAGCAGCAAGCGCCGCCCCCCGCGACCTGGTTTCC
CCAACCGTGGGAGGAGATCTACCATCCGGTGACCGGAAAGAAGCACTGGC
GCCACCGCGCCACTGGGGAGGAGAGGCAAAAAGATCCGCTCTGGTAA
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