mRNA_Ecto-sp13_S_contig12778.2297.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12778.2297.1 vs. uniprot
Match: D8LNM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNM4_ECTSI) HSP 1 Score: 486 bits (1250), Expect = 1.600e-172 Identity = 247/272 (90.81%), Postives = 262/272 (96.32%), Query Frame = 1
Query: 1 MTSSSLGGYGSTEYSSQAAQAALYAEMFSLKCNAGFFVVGLQEGEAVCTPIRVISTLITMSVASAWFSRRKSIKKLLLFFSHWLSGLLHQLIFMTEATMISVCWAGDSLTALIKTLKFFELASSNMLAITNLAICINLALIVMSHRTLSRVRSASTPTLILVFLGLSLGAAAISVPFWTEMVVSGTAFWVRSDEQVARNWIVVSGFYIEFFVGICMLIVVVWLLIFRSTEVKESWKMHARIRYYFGLTLIATGVNLALGICGTIYVVGGRKE 816
MTSSSLGGYGSTEYSSQAAQAALYAEMFSLKCNAGFFVVGLQEGEAVCTPIRVISTLITMSVASAWFSRRKSIKKLLLFFSHWLSGLLHQL+FMTEATM+SVCWAGDSLT LIKTLKFFELA+SNMLAITNLAIC+NLALIVMSHRTLSRVRSASTP LILVFL LSLG AAISVPFWTEMVVSGTAFWV++ EQ A +WIVV+GF++EFFVGICML++VVWL+IFR TE+K+SWKMHARIRYYFGLTLIATGVNLALGICGTIYVVG KE
Sbjct: 1 MTSSSLGGYGSTEYSSQAAQAALYAEMFSLKCNAGFFVVGLQEGEAVCTPIRVISTLITMSVASAWFSRRKSIKKLLLFFSHWLSGLLHQLVFMTEATMVSVCWAGDSLTKLIKTLKFFELAASNMLAITNLAICVNLALIVMSHRTLSRVRSASTPALILVFLALSLGVAAISVPFWTEMVVSGTAFWVQTHEQAAHDWIVVAGFFVEFFVGICMLVIVVWLVIFRRTEIKQSWKMHARIRYYFGLTLIATGVNLALGICGTIYVVGDMKE 272
BLAST of mRNA_Ecto-sp13_S_contig12778.2297.1 vs. uniprot
Match: D7FTK5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK5_ECTSI) HSP 1 Score: 267 bits (683), Expect = 1.580e-85 Identity = 130/243 (53.50%), Postives = 177/243 (72.84%), Query Frame = 1
Query: 88 LKCNAGFFVVGLQEGEAVCTPIRVISTLITMSVASAWFSRRKSIKKLLLFFSHWLSGLLHQLIFMTEATMISVCWAGDSLTALIKTLKFFELASSNMLAITNLAICINLALIVMSHRTLSRVRSASTPTLILVFLGLSLGAAAISVPFWTEMVVSGTAFWVRSDEQVARNWIVVSGFYIEFFVGICMLIVVVWLLIFRSTEVKESWKMHARIRYYFGLTLIATGVNLALGICGTIYVVGGRKE 816
L C GF +GLQEGE TPIRV+STL+++SV SAW S K +K+L LFF+HWLSGL+ L F+ E M++VCW L IK +KF E SSNM+AIT+LAIC+NLALIV SHRTL+RV+S S+P L+ + L +S+G +++VP W + V GT FW+ + +Q + + +VVS F++EF VGICM +++ WLL+FR EVKE W++ ARIRYYF LTL+ T VN+ +GIC T++V+G E
Sbjct: 5 LSCETGFTAIGLQEGEDKITPIRVLSTLVSVSVVSAWCSWTK-VKRLSLFFAHWLSGLVWGLCFVVEDMMVTVCWTESDLIGFIKAVKFIEFVSSNMMAITHLAICVNLALIVSSHRTLTRVQSVSSPWLLSLLLAISIGITSVTVPLWETVYVIGTGFWIVNSDQGSYDAVVVSIFFLEFMVGICMFVILAWLLLFRMKEVKECWRIDARIRYYFCLTLLGTAVNIGIGICSTVFVIGDMDE 246
BLAST of mRNA_Ecto-sp13_S_contig12778.2297.1 vs. uniprot
Match: D8LNM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNM5_ECTSI) HSP 1 Score: 231 bits (588), Expect = 3.120e-73 Identity = 114/178 (64.04%), Postives = 140/178 (78.65%), Query Frame = 1
Query: 286 EATMISVCWAGDSLTALIKTLKFFELASSNMLAITNLAICINLALIVMSHRTLSR-VRSASTPTLILVFLGLSLGAAAISVPFWTEMVVSGTAFWVRSDEQVARNWIVVSGFYIEFFVGICMLIVVVWLLIFRSTEVKESWKMHARIRYYFGLTLIATGVNLALGICGTIYVVGGRKE 816
+ATMISVCW G +L LIKT KF ELAS NMLA+TNLAIC+NLAL+VMSH V S S+P LI+V L +S+GAAA + PFW +++SGT F+ ++ Q +WI +S FY+EFFVGICM ++V WLL+FR TE+KE WKMHARIRYYFGLTLIATGVNL LGICG IY++G R+E
Sbjct: 2 QATMISVCWTGANLIKLIKTFKFLELASVNMLAMTNLAICMNLALVVMSHGDQQPGVNSLSSPLLIVVSLVISIGAAAAAAPFWEFIILSGTGFFPETENQRGSDWITISRFYLEFFVGICMFVIVAWLLLFRMTEIKECWKMHARIRYYFGLTLIATGVNLILGICGVIYLIGDREE 179
BLAST of mRNA_Ecto-sp13_S_contig12778.2297.1 vs. uniprot
Match: D8LNN1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNN1_ECTSI) HSP 1 Score: 233 bits (594), Expect = 1.670e-72 Identity = 109/174 (62.64%), Postives = 140/174 (80.46%), Query Frame = 1
Query: 295 MISVCWAGDSLTALIKTLKFFELASSNMLAITNLAICINLALIVMSHRTLSRVRSASTPTLILVFLGLSLGAAAISVPFWTEMVVSGTAFWVRSDEQVARNWIVVSGFYIEFFVGICMLIVVVWLLIFRSTEVKESWKMHARIRYYFGLTLIATGVNLALGICGTIYVVGGRKE 816
M+ VCWAG ++T +K LKF EL +SNMLAITNLAIC NLAL++MSHRTL+RV+S S+P+L+ + L +S+ A + PFW VVSGT F VR+++Q + +W+ VS F++EF VGICM ++V WLL+FR EVKE WK+HARIRYYFGLTLI T VNLALG+CGTIYVVGGR++
Sbjct: 1 MVLVCWAGSNVTGFVKALKFLELVASNMLAITNLAICANLALVIMSHRTLARVKSFSSPSLVFLSLAVSIAVAVAAAPFWQTTVVSGTGFAVRNEDQRSGDWLAVSRFFLEFLVGICMFVIVAWLLLFRINEVKECWKVHARIRYYFGLTLIGTTVNLALGVCGTIYVVGGREK 174
BLAST of mRNA_Ecto-sp13_S_contig12778.2297.1 vs. uniprot
Match: A0A6H5JZY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZY2_9PHAE) HSP 1 Score: 223 bits (569), Expect = 1.840e-69 Identity = 123/236 (52.12%), Postives = 150/236 (63.56%), Query Frame = 1
Query: 244 HWLSGLLHQLIFMTEATMISVCWAGDSLTALIKTLKFFELASSNMLAITNLAICINLALIVMS-----------HRTLSR----------------------------------VRSASTPTLILVFLGLSLGAAAISVPFWTEMVVSGTAFWVRSDEQVARNWIVVSGFYIEFFVGICMLIVVVWLLIFRSTEVKESWKMHARIRYYFGLTLIATGVNLALGICGTIYVVGGRKE 816
H+ GLL+QL+ + +ATMISVCWAG +L LIKT KF ELAS NMLA TNLAICINLAL+VMS H S V S S+P LI+V L +S+GAAA + PFW +++SGT F+ ++ Q +WI VS FY+EFFVGICM ++V WLL+FR TE+KE WK HARIRYYFGLTLIATGVNL LGICG IY++G R+E
Sbjct: 7 HFSCGLLYQLLILMQATMISVCWAGANLIKLIKTFKFLELASVNMLATTNLAICINLALVVMSESINNTSPSAPHGICSLLPLSGTSVCGLLSLVLPTVGDTAQLQSHGDQQPGVNSLSSPLLIMVSLVISIGAAAAAAPFWDFIILSGTGFFPETENQRGSDWITVSRFYLEFFVGICMFVIVAWLLLFRMTEIKECWKTHARIRYYFGLTLIATGVNLILGICGVIYLIGDREE 242
BLAST of mRNA_Ecto-sp13_S_contig12778.2297.1 vs. uniprot
Match: A0A6H5K8K6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K6_9PHAE) HSP 1 Score: 221 bits (563), Expect = 4.870e-68 Identity = 112/173 (64.74%), Postives = 132/173 (76.30%), Query Frame = 1
Query: 280 MTEATMISVCWAGDSLTALIKTLKFFELASSNMLAITNLAICINLALIVMSHRTLSRVRSASTPTLILVFLGLSLGAAAISVPFWTEMVVSGTAFWVRSDEQVARNWIVVSGFYIEFFVGICMLIVVVWLLIFRSTEVKESWKMHARIRYYFGLTLIATGVNLALGICGTIYV 798
MT+ TMISVCW G+ L IK LK+ E SSNMLAITNLAICINLAL+V SHRTLSRV S STP L+L+FL +S+ AAA SVPFW+ VVSGTAFWV + ++ +WI+VS +EF VGICM I+V WL+ FR +KE WK+HARIRYYF LT+I T VNLALGI G YV
Sbjct: 3 MTQGTMISVCWVGERLEGFIKALKYLEQTSSNMLAITNLAICINLALVVNSHRTLSRVNSVSTPALVLLFLAISVVAAAASVPFWSITVVSGTAFWVTNADKAKADWIIVSIIILEFVVGICMFIIVSWLMAFRMRAIKECWKLHARIRYYFVLTVIGTAVNLALGISGFSYV 175
BLAST of mRNA_Ecto-sp13_S_contig12778.2297.1 vs. uniprot
Match: D8LNN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNN2_ECTSI) HSP 1 Score: 217 bits (553), Expect = 5.330e-68 Identity = 110/168 (65.48%), Postives = 130/168 (77.38%), Query Frame = 1
Query: 295 MISVCWAGDSLTALIKTLKFFELASSNMLAITNLAICINLALIVMSHRTLSRVRSASTPTLILVFLGLSLGAAAISVPFWTEMVVSGTAFWVRSDEQVARNWIVVSGFYIEFFVGICMLIVVVWLLIFRSTEVKESWKMHARIRYYFGLTLIATGVNLALGICGTIYV 798
MISVCW G+ L IK LK+ E SSNMLAITNLAICINLAL+V SHRTLSRV+S STP L+L+FL +S+ AAA SVPFW+ VVSGTAFWV + ++ +WI+VS +EF VGICM ++V WL+ FR +KE WK+HARIRYYF LTLIAT VNLALGI G YV
Sbjct: 1 MISVCWVGERLEGFIKALKYLEQTSSNMLAITNLAICINLALVVNSHRTLSRVKSVSTPALVLLFLAISVIAAAASVPFWSITVVSGTAFWVTNADKAKADWIIVSIIILEFVVGICMFVIVSWLMAFRMQAIKECWKIHARIRYYFVLTLIATAVNLALGISGLSYV 168
BLAST of mRNA_Ecto-sp13_S_contig12778.2297.1 vs. uniprot
Match: A0A6H5KRY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRY2_9PHAE) HSP 1 Score: 216 bits (549), Expect = 2.530e-67 Identity = 108/170 (63.53%), Postives = 135/170 (79.41%), Query Frame = 1
Query: 295 MISVCWAGDSLTALIKTLKFFELASSNMLAITNLAICINLALIVMSHRTLSRVRSASTPTLILVFLGLSLGAAAISVPFWTEMVVSGTAFWVRSDEQVARNWIVVSGFYIEFFVGICMLIVVVWLLIFRSTEVKESWKMHARIRYYFGLTLIATGVNLALGICGTIYVVG 804
MISVCWAG +L+ LIK LKF ELAS+NMLA+TNLAIC+NLAL+VMSHRTLSRV S S+P +I + L L++G AA +VP W ++++GT F S+++ +W VVS F EF VGICM+ +V WLL+FR E+KE WK+H RIRYYFGLTLIATGVNL LGI GT+Y+VG
Sbjct: 1 MISVCWAGGNLSNLIKFLKFLELASANMLAVTNLAICVNLALVVMSHRTLSRVSSLSSPRVIWLSLVLAVGGAAAAVPSWKTIILTGTYFSPYSEDKQDLDWSVVSRFLFEFIVGICMIAIVAWLLLFRMKEIKECWKVHTRIRYYFGLTLIATGVNLVLGIFGTVYIVG 170
BLAST of mRNA_Ecto-sp13_S_contig12778.2297.1 vs. uniprot
Match: D7FTK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK4_ECTSI) HSP 1 Score: 216 bits (550), Expect = 4.580e-66 Identity = 100/188 (53.19%), Postives = 146/188 (77.66%), Query Frame = 1
Query: 253 SGLLHQLIFMTEATMISVCWAGDSLTALIKTLKFFELASSNMLAITNLAICINLALIVMSHRTLSRVRSASTPTLILVFLGLSLGAAAISVPFWTEMVVSGTAFWVRSDEQVARNWIVVSGFYIEFFVGICMLIVVVWLLIFRSTEVKESWKMHARIRYYFGLTLIATGVNLALGICGTIYVVGGRKE 816
+G++ L ++ E M++VCWAG +L LIKT+KF ELASS+MLA+T+LAIC+NLALIV SHRTL RV+S S+P L+ + L +S+G A +VP W ++V GT+FW+ + +Q + +VVS F++EF VG+CM ++V WLL+FR EVKE W++HARIRYY LT++ TG++L++GIC T++V+GG K+
Sbjct: 10 TGIIWSLCWLVEDMMVTVCWAGKNLEDLIKTVKFVELASSHMLALTHLAICVNLALIVSSHRTLKRVQSVSSPGLLTLMLAISMGMTAATVPLWETVIVVGTSFWIVNSDQGKYDAVVVSIFFLEFIVGLCMFVIVAWLLLFRLKEVKECWRIHARIRYYLCLTVLGTGISLSIGICSTVFVLGGLKQ 197
BLAST of mRNA_Ecto-sp13_S_contig12778.2297.1 vs. uniprot
Match: D8LNP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNP0_ECTSI) HSP 1 Score: 211 bits (538), Expect = 7.820e-65 Identity = 104/169 (61.54%), Postives = 129/169 (76.33%), Query Frame = 1
Query: 295 MISVCWAGDSLTALIKTLKFFELASSNMLAITNLAICINLALIVMSHRTLSRVRSASTPTLILVFLGLSLGAAAISVPFWTEMVVSGTAFWVRSDEQVARNWIVVSGFYIEFFVGICMLIVVVWLLIFRSTEVKESWKMHARIRYYFGLTLIATGVNLALGICGTIYVV 801
MISVCWAG++L IKTLKF EL +SNMLAITNLAIC+NL+LIVMS R S V+S ST L+L+FL LS G AAI+VPFW V+SGT FW + + ++++S F +EF VGICM ++V WLL+FR TE+KE W MHA +RYYFGLTL+ T NL LG+CGTIYV+
Sbjct: 1 MISVCWAGENLATFIKTLKFLELFASNMLAITNLAICVNLSLIVMSRRPQSHVKSISTHKLVLLFLALSAGLAAIAVPFWGLTVLSGTGFWELGENKRDHEFVMISTFMVEFLVGICMFVIVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVI 169 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12778.2297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12778.2297.1 >prot_Ecto-sp13_S_contig12778.2297.1 ID=prot_Ecto-sp13_S_contig12778.2297.1|Name=mRNA_Ecto-sp13_S_contig12778.2297.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=273bp MTSSSLGGYGSTEYSSQAAQAALYAEMFSLKCNAGFFVVGLQEGEAVCTPback to top mRNA from alignment at Ecto-sp13_S_contig12778:588..4855+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12778.2297.1 ID=mRNA_Ecto-sp13_S_contig12778.2297.1|Name=mRNA_Ecto-sp13_S_contig12778.2297.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4268bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12778:588..4855+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12778:588..4855+ >mRNA_Ecto-sp13_S_contig12778.2297.1 ID=mRNA_Ecto-sp13_S_contig12778.2297.1|Name=mRNA_Ecto-sp13_S_contig12778.2297.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=819bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12778:588..4855+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |