mRNA_Ecto-sp13_S_contig12772.2294.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12772.2294.1
Unique NamemRNA_Ecto-sp13_S_contig12772.2294.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12772.2294.1 vs. uniprot
Match: A0A6H5JM97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM97_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 9.860e-30
Identity = 65/74 (87.84%), Postives = 65/74 (87.84%), Query Frame = -1 
Query:  202 QASPAATTMASERNSPVAFRSLASTPRKARILLGLEHHDVAACTPSPPSRIGVRRRXXXXXXKVKGPDGTRFLS 423
            QASPAATTMASERNSPVAFRSLASTPRKARILLGLEHHDV AC PSPPSRIGVRR       KVKGPDGTRFLS
Sbjct:  113 QASPAATTMASERNSPVAFRSLASTPRKARILLGLEHHDVVACAPSPPSRIGVRRLSGGGGGKVKGPDGTRFLS 186
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12772.2294.1 vs. uniprot
Match: D7G1C7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C7_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 3.670e-19
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = -1 
Query:  259 TMASERNSPVAFRSLASTPRKARILLGLEHHDVAACTPSPPSRIGVRR 402
            TMASERNSPVAFRSLASTPRKARILLGLEHHDVAAC PSP SRIGVRR
Sbjct:  101 TMASERNSPVAFRSLASTPRKARILLGLEHHDVAACAPSPSSRIGVRR 148
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12772.2294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JM97_9PHAE9.860e-3087.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1C7_ECTSI3.670e-1995.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12772contigEcto-sp13_S_contig12772:3404..3848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size446
Hectar predicted targeting categorysignal anchor
Exons1
Cds size444
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462683.2347825-CDS-Ecto-sp13_S_contig12772:3403..38471681462683.2347825-CDS-Ecto-sp13_S_contig12772:3403..3847Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12772 3404..3847 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12772.2294.1prot_Ecto-sp13_S_contig12772.2294.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12772 3404..3847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12772.2294.1

>prot_Ecto-sp13_S_contig12772.2294.1 ID=prot_Ecto-sp13_S_contig12772.2294.1|Name=mRNA_Ecto-sp13_S_contig12772.2294.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=148bp
THGAPGATAARRGRRRGGGREAVDRIRVIIVVVVIVVTLAPAVEHTTGPG
HHPKSGTTAATAATAAARQEPGAVRALHLPAPPAAPAPDPDPTGRARRAG
GDVVMLEPEQDSRLAGSAGQGPEGDRAVPLRRHGRRRRRCLRRRRRGR
back to top

mRNA from alignment at Ecto-sp13_S_contig12772:3404..3848+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12772.2294.1 ID=mRNA_Ecto-sp13_S_contig12772.2294.1|Name=mRNA_Ecto-sp13_S_contig12772.2294.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=445bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12772:3404..3848+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACACACGGAGCCCCCGGTGCTACCGCAGCACGACGAGGACGTCGTCGAGG
TGGCGGTCGAGAGGCTGTTGATCGAATTCGGGTCATCATCGTTGTTGTTG
TTATTGTTGTTACCCTTGCTCCCGCTGTGGAACACACTACTGGCCCCGGC
CATCATCCGAAAAGTGGCACCACCGCCGCTACCGCCGCCACCGCCGCCGC
CAGACAGGAACCTGGTGCCGTCCGGGCCCTTCACCTTCCCGCCCCCCCCG
CCGCTCCGGCGCCTGACCCCGATCCTACTGGGAGGGCTCGGCGTGCAGGC
GGCGACGTCGTGATGCTCGAGCCCGAGCAGGATTCGCGCCTTGCGGGGAG
TGCTGGCCAGGGACCGGAAGGCGACCGGGCTGTTCCTCTCCGACGCCATG
GTCGTCGCCGCCGGCGATGCCTGCGGCGGCGACGGCGGGGTCGCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12772:3404..3848+

>mRNA_Ecto-sp13_S_contig12772.2294.1 ID=mRNA_Ecto-sp13_S_contig12772.2294.1|Name=mRNA_Ecto-sp13_S_contig12772.2294.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12772:3404..3848+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACACACGGAGCCCCCGGTGCTACCGCAGCACGACGAGGACGTCGTCGAGG
TGGCGGTCGAGAGGCTGTTGATCGAATTCGGGTCATCATCGTTGTTGTTG
TTATTGTTGTTACCCTTGCTCCCGCTGTGGAACACACTACTGGCCCCGGC
CATCATCCGAAAAGTGGCACCACCGCCGCTACCGCCGCCACCGCCGCCGC
CAGACAGGAACCTGGTGCCGTCCGGGCCCTTCACCTTCCCGCCCCCCCCG
CCGCTCCGGCGCCTGACCCCGATCCTACTGGGAGGGCTCGGCGTGCAGGC
GGCGACGTCGTGATGCTCGAGCCCGAGCAGGATTCGCGCCTTGCGGGGAG
TGCTGGCCAGGGACCGGAAGGCGACCGGGCTGTTCCTCTCCGACGCCATG
GTCGTCGCCGCCGGCGATGCCTGCGGCGGCGACGGCGGGGTCGC
back to top