prot_Ecto-sp13_S_contig12748.2277.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12748.2277.1
Unique Nameprot_Ecto-sp13_S_contig12748.2277.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length114
Homology
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: D8LKD0_ECTSI (SsrA-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD0_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 1.270e-71
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0
Query:    6 LHRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFFDDNNR 113
            LHRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFFDDNNR
Sbjct:    2 LHRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFFDDNNR 109          
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: A0A7S4FCI8_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FCI8_CHRCT)

HSP 1 Score: 130 bits (327), Expect = 3.230e-36
Identity = 63/113 (55.75%), Postives = 87/113 (76.99%), Query Frame = 0
Query:    1 ARTSTLHRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFFDDNNR 113
            AR  TL+R+AR+NYE+LE++ AGI LVG+EVKSCR  KIN+ +G+ Q K G+C+L  +HIA    S  F+QH+  R RRLLL+KREI+KL+  V QKG+T+VP+K +F+ +NR
Sbjct:   33 ARDVTLNRQARQNYELLEEYEAGISLVGTEVKSCRAGKINLRDGYCQIKDGECWLRNVHIARHQFSGTFFQHDETRSRRLLLNKREIRKLDAAVQQKGLTIVPVKAYFNCDNR 145          
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: A0A7S3EVW1_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EVW1_9EUKA)

HSP 1 Score: 127 bits (320), Expect = 5.810e-35
Identity = 58/108 (53.70%), Postives = 85/108 (78.70%), Query Frame = 0
Query:    6 LHRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFFDDNNR 113
            ++R ARRNYEIL+ F AGI L+G+EVKSCR +++ + +G+ + K G+C+L  +HIA+ G +  F+QHE  RPRRLLLHKREI+KLE +  Q+G+T+VPL+ +F++ NR
Sbjct:   50 VNRLARRNYEILDDFEAGISLLGTEVKSCRANQMQLRDGYCRIKDGECWLMNVHIAKHGTTGAFFQHEETRPRRLLLHKREIRKLEKESEQRGLTIVPLRCYFNEQNR 157          
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: A0A835YRQ5_9STRA (Small protein B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRQ5_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.430e-34
Identity = 62/106 (58.49%), Postives = 81/106 (76.42%), Query Frame = 0
Query:    7 HRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFFDDNN 112
            +++A RNYEILE F AGIEL+G+EVKS R  + ++DEG+A AK+G+C LHG+HIA    SN + QHE +RPRRLLLHKREIK+LED   + G T VPL ++F+  N
Sbjct:   26 NKQAYRNYEILETFEAGIELLGTEVKSARGGRCSIDEGYAAAKRGECVLHGVHIAPYATSNAYDQHEAKRPRRLLLHKREIKRLEDMTTRAGYTAVPLTLYFNHKN 131          
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: A0A845X7C8_9CYAN (SsrA-binding protein n=1 Tax=Spirulina sp. SIO3F2 TaxID=2607816 RepID=A0A845X7C8_9CYAN)

HSP 1 Score: 118 bits (296), Expect = 8.800e-32
Identity = 58/107 (54.21%), Postives = 79/107 (73.83%), Query Frame = 0
Query:    2 RTSTLHRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFF 108
            RT + +RKAR  YEILE F AG+ LVG+EVKS R  K+NM +GF Q + G+ +LH +HI+    S  ++ HEPRR R+LLLHK+EI KL  K+ +KG+T+VPLK++F
Sbjct:   10 RTISDNRKARFRYEILETFEAGLVLVGTEVKSIRAGKVNMGDGFGQIRNGEAWLHNVHISPYQASGEYFNHEPRRIRKLLLHKKEITKLIGKLEEKGLTLVPLKMYF 116          
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: A0A7S2S2L9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2L9_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.180e-31
Identity = 56/112 (50.00%), Postives = 82/112 (73.21%), Query Frame = 0
Query:    2 RTSTLHRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFFDDNNR 113
            R  +++++ARRNYE LE+  AGI LVG+EVK+ R  +I+M +GFAQ KKG+C+L  +HI     S  F+QHE RR R+LLLHK +I+K   +V  K +T+VP+K +F+++NR
Sbjct:    3 RVFSVNKQARRNYEFLEELEAGISLVGTEVKAIRDGRIDMTDGFAQVKKGECWLKNVHIGPDKSSGPFFQHEARRERKLLLHKNQIRKFNQEVRMKQLTIVPVKAYFNEDNR 114          
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: A0A7T5E3S4_9CYAN (SsrA-binding protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A7T5E3S4_9CYAN)

HSP 1 Score: 117 bits (292), Expect = 3.550e-31
Identity = 57/102 (55.88%), Postives = 78/102 (76.47%), Query Frame = 0
Query:    7 HRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFF 108
            +R+AR  YEILE + AGIEL+GSEVKS R  K+N+ +GFAQ K G+ +L  IHI+   ++N+ Y HE +RPRRLL+H+ EI+KL  KV QKG+T+VPLK++ 
Sbjct:   14 NRQARHEYEILETYEAGIELLGSEVKSIRQGKVNLRDGFAQLKDGELWLQNIHISPHTMTNKAYNHEAKRPRRLLMHRDEIRKLIGKVEQKGLTLVPLKMYL 115          
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: A0A6H2NLS0_9CYAN (SsrA-binding protein n=1 Tax=Leptolyngbya sp. LCM1.Bin17 TaxID=2480211 RepID=A0A6H2NLS0_9CYAN)

HSP 1 Score: 116 bits (291), Expect = 5.030e-31
Identity = 54/102 (52.94%), Postives = 78/102 (76.47%), Query Frame = 0
Query:    7 HRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFF 108
            +R+AR  YEILE + AGIEL+GSEVKS R  K+N+ +G+AQ K G+ +LH +H++   ++N+ Y HE +R R+LLLH+ EI+KL  KV QKG+T+VPLK++ 
Sbjct:   14 NRQARHQYEILETYEAGIELLGSEVKSIRQGKVNLRDGYAQIKNGELWLHNVHVSPHSMTNKVYNHEAKRTRKLLLHRDEIRKLIGKVEQKGLTLVPLKLYL 115          
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: K9FEP1_9CYAN (SsrA-binding protein n=8 Tax=Leptolyngbyaceae TaxID=1890438 RepID=K9FEP1_9CYAN)

HSP 1 Score: 116 bits (290), Expect = 8.210e-31
Identity = 56/102 (54.90%), Postives = 78/102 (76.47%), Query Frame = 0
Query:    7 HRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFF 108
            +R+AR  YEIL+ + AGIEL G+EVKS R  K+N+ +G+AQ K G+ +L  +HI+   ++N+ Y HEPRRPRRLLLHK EI+KL  KV +KG+T+VPLK++ 
Sbjct:   20 NRQARFTYEILDSYEAGIELKGTEVKSIRAGKVNLRDGYAQVKNGEVWLLNVHISPHDMTNQAYNHEPRRPRRLLLHKAEIRKLIGKVEEKGLTLVPLKLYL 121          
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Match: A0A7S2S2R4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2R4_9STRA)

HSP 1 Score: 118 bits (295), Expect = 9.410e-31
Identity = 56/112 (50.00%), Postives = 82/112 (73.21%), Query Frame = 0
Query:    2 RTSTLHRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFFDDNNR 113
            R  +++++ARRNYE LE+  AGI LVG+EVK+ R  +I+M +GFAQ KKG+C+L  +HI     S  F+QHE RR R+LLLHK +I+K   +V  K +T+VP+K +F+++NR
Sbjct:   81 RVVSVNKQARRNYEFLEELEAGISLVGTEVKAIRDGRIDMTDGFAQVKKGECWLKNVHIGPDKSSGPFFQHEARRERKLLLHKNQIRKFNQEVRMKQLTIVPVKAYFNEDNR 192          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12748.2277.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKD0_ECTSI1.270e-71100.00SsrA-binding protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A7S4FCI8_CHRCT3.230e-3655.75Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A7S3EVW1_9EUKA5.810e-3553.70Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A835YRQ5_9STRA1.430e-3458.49Small protein B n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A845X7C8_9CYAN8.800e-3254.21SsrA-binding protein n=1 Tax=Spirulina sp. SIO3F2 ... [more]
A0A7S2S2L9_9STRA1.180e-3150.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7T5E3S4_9CYAN3.550e-3155.88SsrA-binding protein n=2 Tax=Cyanobacteria TaxID=1... [more]
A0A6H2NLS0_9CYAN5.030e-3152.94SsrA-binding protein n=1 Tax=Leptolyngbya sp. LCM1... [more]
K9FEP1_9CYAN8.210e-3154.90SsrA-binding protein n=8 Tax=Leptolyngbyaceae TaxI... [more]
A0A7S2S2R4_9STRA9.410e-3150.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023620Small protein BGENE3D2.40.280.10coord: 2..113
e-value: 8.0E-36
score: 124.8
IPR023620Small protein BSUPERFAMILY74982Small protein B (SmpB)coord: 7..112
IPR000037SsrA-binding proteinPFAMPF01668SmpBcoord: 7..112
e-value: 1.3E-37
score: 128.9
IPR000037SsrA-binding proteinTIGRFAMTIGR00086TIGR00086coord: 7..112
e-value: 2.3E-35
score: 119.7
IPR000037SsrA-binding proteinPANTHERPTHR30308TMRNA-BINDING COMPONENT OF TRANS-TRANSLATION TAGGING COMPLEXcoord: 6..111
IPR000037SsrA-binding proteinHAMAPMF_00023SmpBcoord: 1..113
score: 43.746
NoneNo IPR availablePRODOMPD004488coord: 8..108
e-value: 5.0E-22
score: 252.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12748contigEcto-sp13_S_contig12748:534..2169 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12748.2277.1mRNA_Ecto-sp13_S_contig12748.2277.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12748 534..2169 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12748.2277.1 ID=prot_Ecto-sp13_S_contig12748.2277.1|Name=mRNA_Ecto-sp13_S_contig12748.2277.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp
ARTSTLHRKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKK
GQCFLHGIHIAECGVSNRFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMT
VVPLKIFFDDNNR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023620SmpB
IPR000037SsrA-bd_prot