mRNA_Ecto-sp13_S_contig102061.228.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig102061.228.1
Unique NamemRNA_Ecto-sp13_S_contig102061.228.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig102061.228.1 vs. uniprot
Match: UPI0000161E56 (hypothetical protein n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E56)

HSP 1 Score: 62.4 bits (150), Expect = 9.630e-9
Identity = 46/98 (46.94%), Postives = 49/98 (50.00%), Query Frame = 1 
Query:  151 DNNXXEQIAENVDKDDSGNVSD-------------------------LGDIGVQSSASSSIXXXXXXXXXXXXXEVGVTESLSGNKRTVEEYAGTSSD 369
            DN   E +A+NVDK DSGNVSD                         LGDIGVQSS SSS+                V ESLSGNKRT EEYAGTSSD
Sbjct:  488 DNERIESVADNVDKGDSGNVSDHRSSTSSSMEVSVDXXXXXXXXXSDLGDIGVQSSVSSSME---------------VAESLSGNKRTAEEYAGTSSD 570
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig102061.228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI0000161E569.630e-946.94hypothetical protein n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig102061contigEcto-sp13_S_contig102061:7..486 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size393
Hectar predicted targeting categoryother localisation
Exons2
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462515.0904446-CDS-Ecto-sp13_S_contig102061:6..1011681462515.0904446-CDS-Ecto-sp13_S_contig102061:6..101Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig102061 7..101 -
1681462515.100649-CDS-Ecto-sp13_S_contig102061:188..4861681462515.100649-CDS-Ecto-sp13_S_contig102061:188..486Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig102061 189..486 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig102061.228.1prot_Ecto-sp13_S_contig102061.228.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig102061 7..486 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig102061.228.1

>prot_Ecto-sp13_S_contig102061.228.1 ID=prot_Ecto-sp13_S_contig102061.228.1|Name=mRNA_Ecto-sp13_S_contig102061.228.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
GAENDSDDGGAENDSDDGGAEDDKDGGDDGGAEDDKDGGDDGGADNDKGT
DNNDNEQIAENVDKDDSGNVSDLGDIGVQSSASSSIKDDSGNVSDPGDIE
VGVTESLSGNKRTVEEYAGTSSDSDSDSDDD
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mRNA from alignment at Ecto-sp13_S_contig102061:7..486-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig102061.228.1 ID=mRNA_Ecto-sp13_S_contig102061.228.1|Name=mRNA_Ecto-sp13_S_contig102061.228.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=480bp|location=Sequence derived from alignment at Ecto-sp13_S_contig102061:7..486- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGCCGAGAACGACAGCGACGACGGTGGTGCCGAGAACGACAGCGACGA
CGGTGGTGCCGAGGACGACAAGGACGGCGGCGACGACGGTGGTGCCGAGG
ACGACAAGGACGGCGGCGACGACGGTGGTGCCGACAATGACAAAGGCACT
GACAACAACGACAACGAGCAAATTGCGGAGAATGTAGACAAGGATGACAG
TGGTAACGTTTCAGACCTGGGCGACATTGGTGTACAGAGCAGCGCAAGTA
GCAGCATCAAGGACGACAGTGGTAACGTTTCTGACCCGGGAGACATTGGT
GTACAGGGCAGCGCAAGTAGGAGCGTCAACCTGGGAGACGTTGGTGTACG
GAGCAGCACAAGTAGCAGCATGGAAGTCTCGGCAGAAGTTGGTGTCACGG
AGTCTCTTAGTGGCAACAAGCGCACCGTAGAGGAATACGCCGGCACTTCG
TCGGACTCAGACTCTGACTCGGACGATGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig102061:7..486-

>mRNA_Ecto-sp13_S_contig102061.228.1 ID=mRNA_Ecto-sp13_S_contig102061.228.1|Name=mRNA_Ecto-sp13_S_contig102061.228.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig102061:7..486- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGCCGAGAACGACAGCGACGACGGTGGTGCCGAGAACGACAGCGACGA
CGGTGGTGCCGAGGACGACAAGGACGGCGGCGACGACGGTGGTGCCGAGG
ACGACAAGGACGGCGGCGACGACGGTGGTGCCGACAATGACAAAGGCACT
GACAACAACGACAACGAGCAAATTGCGGAGAATGTAGACAAGGATGACAG
TGGTAACGTTTCAGACCTGGGCGACATTGGTGTACAGAGCAGCGCAAGTA
GCAGCATCAAGGACGACAGTGGTAACGTTTCTGACCCGGGAGACATTGAA
GTTGGTGTCACGGAGTCTCTTAGTGGCAACAAGCGCACCGTAGAGGAATA
CGCCGGCACTTCGTCGGACTCAGACTCTGACTCGGACGATGAT
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