mRNA_Ecto-sp13_S_contig12743.2274.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12743.2274.1
Unique NamemRNA_Ecto-sp13_S_contig12743.2274.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12743.2274.1 vs. uniprot
Match: A0A6H5K8R4_9PHAE (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8R4_9PHAE)

HSP 1 Score: 572 bits (1473), Expect = 2.910e-183
Identity = 289/301 (96.01%), Postives = 293/301 (97.34%), Query Frame = 1
Query:  118 PRHSSMFGLSTNLGYLWVSHTRAGGSKVVPYRVARDSPLGVLVASDPMLAKPLRLSLHGLLMRLLVDQEFKRDFALAFARLYEYLNSLYCKGVGVSDESIFGFSVQTFTTPSLVRLLADASAETPSAILPNPDHGVPKVWRFSETPGLLALLAKALVRTMWDAGCRECGREGGREAVIAAQQPGPRGAARGENAFLEHDITNHRRFVHVFRDLEYALQSPGTALDVATLAANPGPGSEPIRLWLKVLSALQYMDTNVRWIGSHIEYESRRFYGAFGLSFSLASVTDALVDRALRKASPNNA 1020
            PRHSSMFGLSTNLGYLWVSHTRAGGS+ VPYRVARDSPL VLVASDPM+AKPLRL LHGLLMRLLVDQEFKRDFALAFARLYEYLNSLYCKGVGVSDESIFGFSVQTFTTPSLVRLLADASA TPSAILPNPD GVPKVWRFSETPGLLALLA+ALVRTM DAGCR CGREGGREAVIAAQQPGPRGAARGENAFLEHDITNHRRF+HVFRDLEYALQSPGTALDVATLAANPGPGSEPIRLWLKVLSALQYMDTNVRWIGSHIEYESRRFYGAFGLSFSLASVTD LVDRALRKASPNNA
Sbjct:  124 PRHSSMFGLSTNLGYLWVSHTRAGGSEAVPYRVARDSPLVVLVASDPMIAKPLRLCLHGLLMRLLVDQEFKRDFALAFARLYEYLNSLYCKGVGVSDESIFGFSVQTFTTPSLVRLLADASAATPSAILPNPDLGVPKVWRFSETPGLLALLAEALVRTMRDAGCRGCGREGGREAVIAAQQPGPRGAARGENAFLEHDITNHRRFLHVFRDLEYALQSPGTALDVATLAANPGPGSEPIRLWLKVLSALQYMDTNVRWIGSHIEYESRRFYGAFGLSFSLASVTDVLVDRALRKASPNNA 424          
BLAST of mRNA_Ecto-sp13_S_contig12743.2274.1 vs. uniprot
Match: D7G3D3_ECTSI (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D3_ECTSI)

HSP 1 Score: 501 bits (1290), Expect = 2.120e-167
Identity = 261/300 (87.00%), Postives = 261/300 (87.00%), Query Frame = 1
Query:  121 RHSSMFGLSTNLGYLWVSHTRAGGSKVVPYRVARDSPLGVLVASDPMLAKPLRLSLHGLLMRLLVDQEFKRDFALAFARLYEYLNSLYCKGVGVSDESIFGFSVQTFTTPSLVRLLADASAETPSAILPNPDHGVPKVWRFSETPGLLALLAKALVRTMWDAGCRECGREGGREAVIAAQQPGPRGAARGENAFLEHDITNHRRFVHVFRDLEYALQSPGTALDVATLAANPGPGSEPIRLWLKVLSALQYMDTNVRWIGSHIEYESRRFYGAFGLSFSLASVTDALVDRALRKASPNNA 1020
            RHSSMFGLSTNLGYLWVSHTRAGGSK VPYRVARDSPLGVLVASDPMLAKPLRLSLHGLLMRLLVDQEFKRDFALAFARLYEYLNSLYCKGVGVSDESIFGFSVQTFTTPSLVRLLADASAETPSAILPNPDHGVPKVWRFSETPGLLALLAKALVRTMWDAGCR CGREGGREAVIAAQQPGPRGAARGENAFLEHDITNHRRFVHVFRDLEYALQ                                     NVRWIGSHIEYESRRFYGAFGLSFSLASVTDALVDRALRKASPNNA
Sbjct:  492 RHSSMFGLSTNLGYLWVSHTRAGGSKAVPYRVARDSPLGVLVASDPMLAKPLRLSLHGLLMRLLVDQEFKRDFALAFARLYEYLNSLYCKGVGVSDESIFGFSVQTFTTPSLVRLLADASAETPSAILPNPDHGVPKVWRFSETPGLLALLAKALVRTMWDAGCRGCGREGGREAVIAAQQPGPRGAARGENAFLEHDITNHRRFVHVFRDLEYALQ-------------------------------------NVRWIGSHIEYESRRFYGAFGLSFSLASVTDALVDRALRKASPNNA 754          
BLAST of mRNA_Ecto-sp13_S_contig12743.2274.1 vs. uniprot
Match: A0A836CB31_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB31_9STRA)

HSP 1 Score: 167 bits (422), Expect = 3.350e-42
Identity = 105/259 (40.54%), Postives = 146/259 (56.37%), Query Frame = 1
Query:  229 PLGVLVASDPMLAKPLRLSLHGLLMRLLVDQEFKRDFALAFARLYEYLNSLYCKGVGVSDESIFGFSVQTFTTPSLVRLLADAS---AETPSAILPNPDHGVPKVWRFSETPGLLALLAKALVRTMWDAGCRECGREGGREAVIAAQQPGPRGAARGENAFLEHDITNHRRFVHVFRDLEYALQSPGTALDVATLAANPGPGSEPIRLWLKVLSALQYMDTNVRWIGSHIEYESRRFYGAFGLSFSLASVTDALVDRAL 996
            PL +L+ +DP+L K  R + H L MRLL D  FKR FA AF R +  L++L+ +GVG S ES+FGFSVQ FTTPSLV+LL   S   +E  SA++      +P+            +L + L+ +   AGC   GR+GG             GA   ++AFL+H + ++RRF HVF DLEY L SPG+            P       WL +LS LQ MD   R +G+H+EYE +R+  AFG+S +L SV++ L+ R +
Sbjct:  432 PLLLLMLADPLLLKQQRSAAHALFMRLLTDAAFKRAFAAAFGRAFRALHALFARGVGTSSESLFGFSVQIFTTPSLVQLLDGGSGDASELCSALVEAGKSPLPE-------GSAQGMLVQCLLDSFRTAGC---GRQGGE------------GAEGDKDAFLDHGVVSYRRFSHVFSDLEYVLSSPGSP-----------PRLSVAEHWLGLLSDLQGMDAAKRQLGTHVEYELQRWMSAFGISLALTSVSEVLIGRTI 657          
BLAST of mRNA_Ecto-sp13_S_contig12743.2274.1 vs. uniprot
Match: A0A4D9D1X7_9STRA (E3 ubiquitin-protein ligase n=6 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1X7_9STRA)

HSP 1 Score: 152 bits (383), Expect = 4.980e-37
Identity = 97/260 (37.31%), Postives = 136/260 (52.31%), Query Frame = 1
Query:  220 RDSPLGVLVASDPMLAKPLRLSLHGLLMRLLVDQEFKRDFALAFARLYEYLNSLYCKGVGVSDESIFGFSVQTFTTPSLVRLLADASAETPSAILPNPDHGVPKVWRFSETPGLLALLAKALVRTMWDAGCRECGREGGREAVIAAQQPGPRGAARGENAFLEHDITNHRRFVHVFRDLEYALQSPGTALDVATLAANPGPGSEPIRLWLKVLSALQYMDTNVRWIGSHIEYESRRFYGAFGLSFSLASVTDALVDRALR 999
            + S L +L+ +D  L   LR  L  L + LLVD  FK   A +  R Y  LNSLY +GVG  D+S+F FSVQ +TTPS+VR LA ++ +                     +PGL+ +L +AL+     AG  +              QP  +G       F E+ +  HRR+ H+ RD++YALQ+ GTA  V    A PGPG  P+R W++ LS +Q+ D  VR  G+H+E+ES  +  AF LSF L S +  L+   LR
Sbjct:  435 QSSRLALLLVADFFLTNQLRTELQALYLHLLVDAHFKPALARSLTRCYALLNSLYSRGVGTQDDSLFSFSVQLYTTPSIVRWLATSTEDE----------------ELLGSPGLMRVLTEALLAAFRLAGWCD-------------GQPLSQG-------FWENPLLQHRRYAHLLRDMDYALQTEGTAAGVLR-QAYPGPGPRPLRAWVEALSMMQHADHMVRKTGTHLEFESTVWMQAFTLSFPLYSTSTTLIAHGLR 657          
BLAST of mRNA_Ecto-sp13_S_contig12743.2274.1 vs. uniprot
Match: A0A7S2SCJ2_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SCJ2_9STRA)

HSP 1 Score: 110 bits (274), Expect = 7.200e-24
Identity = 94/290 (32.41%), Postives = 134/290 (46.21%), Query Frame = 1
Query:  226 SPLGVLVASDPMLAKPLRLSLHGLLMRLLVDQEFKRDFALAFARL-YEYLNSLYCKGVGVSDESIFGFSVQTFTTPSLVRLLADASAETPSAILPNP-DHGVPKVWRFSETPGLLAL-------LAKALVRTMWDAGCRECGREGG-REAVIAAQQPGPRGAAR-------------GEN------------AFLEHDITNHRRFVHVFRDLEYALQSPGTALDVATLAANPGPGSEPIRLWLKVLSALQYMDTNVRWI-GSHIEYESRRFYGAFGLSFSLASVTDALVD 987
            SPL +L+  DP   K LR++ H L + LL+D  FK  FA +   + Y  L++L+C GVG   ++   F+VQ FT  SLVR L   SA+    +L N  D   P     SET     +       +A+ +VR      C      G  +E  +  +  G   ++              GEN             +L+   T H+R  H++RDLEY  ++PGTAL +  L  N       I  W ++L   Q MD   R I G H+EYE  R+  AFGLS ++ S  DAL +
Sbjct:   61 SPLMLLLLMDPYPTKQLRVATHTLFLSLLIDSRFKSRFAASLGGVAYRPLSTLFCAGVGTEADTPLSFTVQIFTAGSLVRALC--SADAMKKLLSNESDTNAPPSLPTSETSTKNVMDDVYTIAIAQTVVR------CIHTNLLGATKEVKMVLKHTGDTLSSNNNDGLQSALTYQIGENPLLTLLPAAPDDCYLDSRSTRHKRLPHLYRDLEYIFETPGTALRL--LLQNDTDTLSFIPAWCRLLRLTQGMDPQKRKINGGHVEYEQNRWLEAFGLSLNITSARDALAE 340          
BLAST of mRNA_Ecto-sp13_S_contig12743.2274.1 vs. uniprot
Match: A0A7S1VIH2_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VIH2_9STRA)

HSP 1 Score: 110 bits (275), Expect = 7.670e-23
Identity = 92/294 (31.29%), Postives = 129/294 (43.88%), Query Frame = 1
Query:  226 SPLGVLVASDPMLAKPLRLSLHGLLMRLLVDQEFKRDFALAFARL-YEYLNSLYCKGVGVSDESIFGFSVQTFTTPSLVRLLADASA-------ETPSAILPNPDHGV---PKVWRFSETPGLLALLAKALVRTMWDAGCRECGREGGREAVIAAQQPGPRGA---------------ARGENAFLEHDITNHRRFVHVFRDLEYALQSPGTALDVATLAANP----GPGSEPIR-----------LWLKVLSALQYMDTNVRWI-GSHIEYESRRFYGAFGLSFSLASVTDAL 981
            SP+ +++  DP   K +R +LH L + LL+D  FK  FA A   + Y  L++L+C GVG   ++  GF+VQ FT  SLVR L  +SA       +  S   P P  G+   P             L A   VR +          E   +  +  Q      A               A  ++ FL+   T H+R  H+ RDLEY +++PGTAL +    A P      GS P             ++ ++L   Q MD   R I G H+EYE  R+  AFGLS + A   DAL
Sbjct:  311 SPVVLMLLLDPYPTKQVRTALHSLFLSLLIDARFKCRFAAALGAVAYRPLSTLFCAGVGTESDTPLGFTVQIFTAGSLVRALGSSSAIEKLLKSDMESGASPGPSIGIFAMPIAHSIVRCIHTNLLGASKEVRMLLKNTVTRNDEESSEDLALRLQNNSLLPALTYNAGEHPMCVLLPAAPDDGFLDSRSTRHKRLPHLLRDLEYVMETPGTALRLMLPLAYPYFPRSGGSAPATPLLENLLPFATVYSRMLRMAQGMDPQKRKISGGHVEYEQNRWLDAFGLSLNFAGTRDAL 604          
BLAST of mRNA_Ecto-sp13_S_contig12743.2274.1 vs. uniprot
Match: A0A448ZCJ2_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZCJ2_9STRA)

HSP 1 Score: 107 bits (268), Expect = 6.060e-22
Identity = 87/285 (30.53%), Postives = 126/285 (44.21%), Query Frame = 1
Query:  226 SPLGVLVASDPMLAKPLRLSLHGLLMRLLVDQEFKRDFALAFARLYEYLNSLYCKGVGVSDESIFGFSVQTFTTPSLVRLLADASAETPSAILPNPDHGVPKVWRFSETPGL----LALLAKALVRTMWDAGCRECGR---------------EGGREAVIAAQQPGPRGAARGENAFLEHDITNHRRFVHVFRDLEYALQSPGTALDVATLAANP--------GPGSEPIRL---WLKVLSALQYMDTNVRWI-GSHIEYESRRFYGAFGLSFSLASVTDALVD 987
            SP  +L+  DP   K LR ++H L + LL D  FK  FA A    Y  L++L+C GVG   ++  GF+VQ FT  SLVR L  A A   +A L   D      ++ S + G+    +AL     + T      +E                    G   ++      P      ++ +L+   T H+R  H+ RDLEY +++PGTA+ +      P          G E +     W ++L   Q MD   R   G H+EYE  R+  AFGLS + A   DAL +
Sbjct:  788 SPAILLLLLDPYPTKQLRGAIHSLFLSLLTDARFKCRFAAALGIAYRPLSTLFCAGVGTEADTPLGFTVQIFTAGSLVRALGSAPA---AAKLLLSDDERESAYQKSSSIGVFTVPIALTVVRCIHTNLLGATKEVHMILNNTANSCLAATTYVAGEHPIMTLLPTAP------DDGYLDSRSTRHKRLPHLLRDLEYVIETPGTAMRILLPKQFPPYRGMSLSSRGEEVLTFCTTWARLLRLAQGMDPQKRKTNGGHVEYEQSRWLEAFGLSLNFAGTRDALAE 1063          
BLAST of mRNA_Ecto-sp13_S_contig12743.2274.1 vs. uniprot
Match: A0A1Z5JKC4_FISSO (E3 ubiquitin-protein ligase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKC4_FISSO)

HSP 1 Score: 103 bits (258), Expect = 1.260e-20
Identity = 98/310 (31.61%), Postives = 137/310 (44.19%), Query Frame = 1
Query:  226 SPLGVLVASDPMLAKPLRLSLHGLLMRLLVDQEFKRDFALAFARLYEYLNSLYCKGVGVSDESIFGFSVQTFTTPSLVRLLADASA--------ETPSAILPNPDHG--------VPKVWRF------SETPGLLALLAKALVRTMWDA------GCRECGREGGREAV--IAAQQPG----PRGAARGENAFLEHDITNHRRFVHVFRDLEYALQSPGTALDVATLAANP---GPG----SEPI----RLWLKVLSALQYMDTNVRWI-GSHIEYESRRFYGAFGLSFSLASVTDALVDRALRKASPNN 1017
            SP+ +L+  DP   K LR SLH L + LL D  FK  FA A    Y  L +L+C GVG   +S   FSVQ FT  SLVR L   +A            ++ P   H         VP +         +   G    ++  L  T   +      G  + G +    A+  +A + P     P   A  ++ FL+   T H+R  H+ RDLEY +++PGTA  +      P   GP      E I     ++ ++L   Q MDT  R I G H+EYE  R+  AFGLS + A   DAL + A     P++
Sbjct:  717 SPIMLLLLFDPYPTKQLRGSLHVLFLSLLTDSRFKSRFAGALGVAYRPLCTLFCAGVGTEADSPLHFSVQIFTAGSLVRALCHRNAAEKLLLSDHLADSLSPEDSHQNESSIGVFVPPISHVIVRCVHTNLLGATQEISMILKNTFSGSDDNSIDGPLQLGNDNLLPALTYVAGEHPLLTLLP---AAHDDGFLDSRSTRHKRLPHILRDLEYVIETPGTATRLLLPHRFPTQYGPSLSLRGEDILSFASIFARMLRLAQGMDTQKRKISGGHVEYEQNRWLEAFGLSLNFAGTRDALAESACSSVDPSS 1023          
BLAST of mRNA_Ecto-sp13_S_contig12743.2274.1 vs. uniprot
Match: B7G3L2_PHATC (E3 ubiquitin-protein ligase n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G3L2_PHATC)

HSP 1 Score: 94.7 bits (234), Expect = 1.430e-17
Identity = 87/297 (29.29%), Postives = 128/297 (43.10%), Query Frame = 1
Query:  241 LVASDPMLAKPLRLSLHGLLMRLLVDQEFKRDFALAFARLYEYLNSLYCKGVGVSDESIFGFSVQTFTTPSLVRLLADASAETPSAILPNPD---HGVPKVWRFSETPGLLALLAKALVRTMWDAGCREC---------GREGGRE---------------AVIAAQQP--GPRGAARGENAFLEHDITNHRRFVHVFRDLEYALQSPGTALDVATLAANPGPGSEPIRL-----------WLKVLSALQYMDTNVRWI-GSHIEYESRRFYGAFGLSFSLASVTDALVDRALRKAS 1008
            L+  DP   K +R ++H L++ LL D  FK   A A    Y  L++L+C GVG   +S   F+VQ FT  SLVR L    A     I  +P+   H    +  F+     +A      + T      +E          G +   E                 +A + P   P  AA  ++ FL+   T H+R  H+ RDLEY +++PGTA+ +      P     P+ +           + ++L   Q MD   R I G H+EYE  R+  AFGLS + A   DAL +   R +S
Sbjct:  889 LLLLDPYPTKQVRGAIHALILSLLTDARFKSRVAGALGVAYRPLSTLFCAGVGTEADSPLHFTVQIFTAGSLVRALGSGPATEALLISDDPNRAGHSEASIGVFTSP---IAHTIVRCIHTNLLGATKEVNMILNHTTSGTDDAEEDPVFQPSNDSLLPALTYVAGEHPLMTPLPAA-PDDGFLDSRSTRHKRLPHMLRDLEYVIETPGTAIRLLLPRRFPVYQGPPLSMRGEDVLAFPVVFSRMLRLAQGMDPQKRKISGGHVEYEHIRWLEAFGLSLNFAGARDALSESPPRSSS 1181          
BLAST of mRNA_Ecto-sp13_S_contig12743.2274.1 vs. uniprot
Match: A0A6S8VUG7_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8VUG7_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 9.480e-17
Identity = 88/296 (29.73%), Postives = 130/296 (43.92%), Query Frame = 1
Query:  226 SPLGVLVASDPMLAKPLRLSLHGLLMRLLVDQEFKRDFALAFARL-YEYLNSLYCKGVGVSDESIFGFSVQTFTTPSLVRLLADASAETPSAILPNPDHGVPKVWRFSETPGLLAL-LAKALVRTMWD---AGCREC------------GREGG----------REAVIAAQQPGPRGA---ARGENAFLEHDITNHRRFVHVFRDLEYALQSPGTALDVATL--AANPGPGSEPIRLWLKVLSALQYMDTNVRW-IGSHIEYESRRFYGAFGLSFSLASVTDALVDRALRKASPN 1014
            SPL +++  DP   K LR S+H L + LL D   +  FA +   + Y  L +L+C GVG   ++   F+VQ FT  S+VR L   S E    +L +   G  ++       G+  L LA  + R +       C+E               +GG            A++  Q   P         ++ FL+   T H+R  H+ RDLEY L++PGTA+ +       N         +W ++L   Q MD   R   G H+EYE  R+  AF LS   A   D L + +L  A+PN
Sbjct:  774 SPLLIMLLLDPYPTKQLRGSVHQLFLSLLTDSRLRTRFAASLGGIAYRSLTTLFCAGVGTEADTPLNFTVQIFTAGSIVRALC--SLEGTQKLLSS--DGKEEIDDSEGARGVFCLPLAHNIARCIHTNLLGACKEVQMVLKNTAAGKKSNDGGIFDHQSRNKLLPALVYQQGEQPLSTLLPTAPDDGFLDCRSTKHKRLPHLLRDLEYVLETPGTAMRLLLPDETENSHNAINFSTVWCRLLRLAQGMDPQKRKKSGGHVEYEQLRWLEAFSLSLHFAGARDKLAE-SLPNAAPN 1064          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12743.2274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5K8R4_9PHAE2.910e-18396.01E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp.... [more]
D7G3D3_ECTSI2.120e-16787.00E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sil... [more]
A0A836CB31_9STRA3.350e-4240.54E3 ubiquitin-protein ligase n=1 Tax=Tribonema minu... [more]
A0A4D9D1X7_9STRA4.980e-3737.31E3 ubiquitin-protein ligase n=6 Tax=Monodopsidacea... [more]
A0A7S2SCJ2_9STRA7.200e-2432.41E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Euc... [more]
A0A7S1VIH2_9STRA7.670e-2331.29E3 ubiquitin-protein ligase n=1 Tax=Grammatophora ... [more]
A0A448ZCJ2_9STRA6.060e-2230.53E3 ubiquitin-protein ligase n=1 Tax=Pseudo-nitzsch... [more]
A0A1Z5JKC4_FISSO1.260e-2031.61E3 ubiquitin-protein ligase n=2 Tax=Fistulifera so... [more]
B7G3L2_PHATC1.430e-1729.29E3 ubiquitin-protein ligase n=3 Tax=Phaeodactylum ... [more]
A0A6S8VUG7_9STRA9.480e-1729.73E3 ubiquitin-protein ligase n=1 Tax=Chaetoceros de... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12743contigEcto-sp13_S_contig12743:749..4624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score504.2
Seed ortholog evalue4.7e-140
Seed eggNOG ortholog2880.D7G3D3
Model size1025
KEGG koko:K10626
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.ubiquitin-dependent protein catabolic process via the N-end rule pathway
EggNOG OGsKOG1140@1,KOG1140@2759
EC2.3.2.27
Cds size1023
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462681.8251925-CDS-Ecto-sp13_S_contig12743:748..11141681462681.8251925-CDS-Ecto-sp13_S_contig12743:748..1114Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12743 749..1114 +
1681462681.8371005-CDS-Ecto-sp13_S_contig12743:2187..23411681462681.8371005-CDS-Ecto-sp13_S_contig12743:2187..2341Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12743 2188..2341 +
1681462681.8448482-CDS-Ecto-sp13_S_contig12743:3122..33731681462681.8448482-CDS-Ecto-sp13_S_contig12743:3122..3373Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12743 3123..3373 +
1681462681.8526719-CDS-Ecto-sp13_S_contig12743:4124..42351681462681.8526719-CDS-Ecto-sp13_S_contig12743:4124..4235Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12743 4125..4235 +
1681462681.8606064-CDS-Ecto-sp13_S_contig12743:4483..46241681462681.8606064-CDS-Ecto-sp13_S_contig12743:4483..4624Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12743 4484..4624 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12743.2274.1prot_Ecto-sp13_S_contig12743.2274.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12743 749..4624 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12743.2274.1

>prot_Ecto-sp13_S_contig12743.2274.1 ID=prot_Ecto-sp13_S_contig12743.2274.1|Name=mRNA_Ecto-sp13_S_contig12743.2274.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=341bp
ADGGGGGGGGGAGNPPLYGPTSSQSLPETNQQQESRAPPPRHSSMFGLST
NLGYLWVSHTRAGGSKVVPYRVARDSPLGVLVASDPMLAKPLRLSLHGLL
MRLLVDQEFKRDFALAFARLYEYLNSLYCKGVGVSDESIFGFSVQTFTTP
SLVRLLADASAETPSAILPNPDHGVPKVWRFSETPGLLALLAKALVRTMW
DAGCRECGREGGREAVIAAQQPGPRGAARGENAFLEHDITNHRRFVHVFR
DLEYALQSPGTALDVATLAANPGPGSEPIRLWLKVLSALQYMDTNVRWIG
SHIEYESRRFYGAFGLSFSLASVTDALVDRALRKASPNNAA
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mRNA from alignment at Ecto-sp13_S_contig12743:749..4624+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12743.2274.1 ID=mRNA_Ecto-sp13_S_contig12743.2274.1|Name=mRNA_Ecto-sp13_S_contig12743.2274.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3876bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12743:749..4624+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGATGGAGGAGGAGGGGGAGGAGGAGGAGGGGCTGGAAATCCTCCGCT TTATGGCCCAACTTCTTCCCAGTCTCTGCCGGAGACCAACCAGCAACAGG AGTCGAGGGCGCCGCCGCCGCGGCACAGCAGCATGTTCGGCCTGAGCACC AACCTGGGGTACCTGTGGGTGAGCCACACGAGGGCGGGCGGGAGCAAGGT GGTGCCTTACCGGGTGGCCCGAGACTCCCCGCTGGGGGTGCTGGTGGCGT CGGACCCCATGCTCGCGAAGCCCCTGAGGCTCTCCCTGCACGGCCTGCTG ATGAGGCTGCTCGTGGACCAGGAGTTCAAGAGGGACTTCGCGCTGGCGTT CGCGCGGCTGTACGAGGTGTGTTGTGTGTTACGTAACCCCTCCTCTGTTG TTCGGTGATGTAGGGAACCGTTGTGGAGTGTGGATCCGGGTGGCCCCTAT GTTTTCGAACAGGGTGTACGCCTGTAGTATTCACAAGAATATGGGGAATG ACGGAGTGCGTGCACATGGGATGCACTGCGTCAAGGGGCGACAGGGCTAA GGTCGAGAGATTGGAGGGGGGGCTGGGTCTAGTGTGGTATATGCACCGTT TTCTTTAAGTTGTCTCGCAAAACGTGGACGGACAAATTGTTGTGTATATA TCATACGCAGTACAATGACCTCCGGCATCAACCTATGCATGCTCATGGTG TTTTTGGGATCTTGCACTCGGATAAATATGGAAGATATAGGCTTTGCTTT ACCCACACTTAAACCCTATGCAATAAACCCCCAAAATATGCCAATGCAAG GATAAGAAAACCCATCGATGGGGGGGGAGGAGGGACTGTGTTGCTCTTGG TGTTTGTCGCTTCGAGGGCCTAATCGAGCACACCATGGCATGGCAGCAGT GGGCGTGCAGCTTGCCGGCGGGCACTGTTCGCGTGGGCAGGTTTTGTGTG AAATGGGTGGTCGGGTGTGTTGTTGTGCGGGCATACCTTCCGGTTTTGAT TGTTCTCGTTGGTGGGCTTCGTACTTTCGACAAGGTTATGTAGCACGGTC GATTATATGGCTGTTGCTTCGATGCGTTCCTCTGCTTCTCTGTCTTTCAC ATGTAAACCCTGACAGTGTTGTGTTTTTGGTTGTTCCTCGTATTTTCCTA GTCCTCCCCTTATTTGTTTCTTTTTCCAACATGGTGTTAATTTTCATCCC GGCGTTCTCACTGTTCGCCCTCTTTCCCCACTCGGTTTAGCTCCCTTCTG TCTTCTCCTTTCTTGTTCGTTTGCGAACAGCAACAACGACAAAAACTTGT CAAAAAAAAACAGTAGCAGCAACCACAACAACGACACGACCATCACCACC GCCCACAACAACAAACAAAACGAAAAAATATGCCTCCTCTTTTCTTCCCG GTGGTCTCTCTCGCCCTTGCCTGCCCCCTGTCCGTCCAGTACCTAAACTC CCTCTACTGCAAGGGCGTGGGCGTGTCGGACGAGAGCATCTTCGGCTTCA GCGTCCAGACCTTCACCACGCCGAGCCTGGTCCGTCTCCTGGCCGACGCC TCGGCGGAGACCCCCAGCGCGATTCTCCCCAACCCAGACCATGGTCAGTG CTGTCCACAAGATTGTGAACCTCAACCTTGAAATTGTTGCTTCGCTCTTT GAGTTCGAGTGGGCGCATCCTTTGCTGGGTTATTGGGTTGTGCCACGGAA GGCGTCCGTGCCAGTTTGGATCGGGACGGTTTTAGTGTAGTGGGACGGTT TTAATGTGCAGATAACCGTAGGGAACAGCGCCAACTGGATGACTGTATGT AGTCTAGCGCGTTTCGAAATAAGTCTTCCGCTGGATGGCGGTGCTAGCGT ATGGGTATAATTTTTGTTGTCTTTTTTTCCGCAACCCACAGAGGGGATCG ACTTTGAAGCAGTAAGTAGACGGGATGGGATGGGATAGCTCTATGCGGGT GACGGTACGGTACGCCCGCGTTGTTTTCGTACCCCAGAGTAGCAGATGGT CCATGTGATGCTGACGGCTGGGAGGTCGCGCGGCGAAGCATTAGCCGTAG TATATGGCACCACGAGTGTTTGCTAGAGGTATTGTAGCACTATATGGTAG AGCAGTATATGCTGCTGGAGGTGCAGGAGTATCCGTCGCAAGCCCCACCT TTCGCCAAGACGATAGCAAGGCATTCAGGAGTGCTGCTGTGGCCCAAACG ATCCCCGGTGACCACGCACACCGTTCCCGCCACTATGCTGTAAACCTCAT TCGTCAATGCCACCCTTTCTCCTCCGACAGGTGTTTGCCAACAGTCACAT GCTGCTGTTCATGCCCCGGGCGGCGCATCCCAACGAAAATCTTTTTTACA CGCGCCGGCTCTCTTCTTTGTCAGGAGTTCCAAAAGTTTGGCGCTTCTCC GAAACCCCGGGGCTGCTGGCCTTGCTCGCGAAGGCGCTGGTCAGGACCAT GTGGGACGCGGGATGCCGCGAGTGCGGGCGCGAGGGGGGGAGGGAGGCGG TCATCGCGGCCCAGCAGCCGGGCCCCCGGGGGGCGGCCCGCGGCGAGAAC GCCTTCCTTGAGCACGACATCACCAACCACCGGAGGTTCGTGCACGTGTT CCGGGACCTGGAGTACGCTCTGCAGGTGCGTTCCGTTCCCGTTTCCGCTC CGTTCCGTTTCCGTGTCCGTTCCGCCTCCCGGGTGCCCGCGGCCCTCGGG GAGAGGGATTTTGTTGTTGTTGTGCGTGTTTTTTGTGTGAAAATTGTGCG TGTGTGTTTGTGTGTGTGTTTTTTTGTCACACTTGGATATTGGAAGCGTG GAAGTTTTTGCTTGGCCTGCGTGCGCGTCTCTGTTCAAAACCCCGGTTGT AGTTGTTCCAACGTCGGTTGTCCCAAGGAATCTGGACTCCCCTCCCTGTA CGCAAGTCCCGCGAGCGTCGTCTGTTCGCACATTCGTCGATCAATTCACA GGGCCACTATCTCCAAAGATAAAAGAGAGAGAGATGAGAGAGTGAGAGAG ATAGAGCAAGATAGAGGGAGAGGGAGACTGCTGTTATTCCCCCGCCGCCG TGTTTATGGATGAGGCCACGAATCGGAGCTAGGAGCCCTCTCCCCCCAAA CGACGACGCCGAAAACGACGTCGATGCCTGCGTCAAGTAAAGAAAATATT TCAACAGCATGGACAGGAATGAAAGTCATACCCTGAAATATGAGTCCACA GGGGCATGGCATGATATTGCACCACCACGAACAACACCAACAGCCACAAC CAGCAACTCTCGCCGGATACTGCATGCGGGCCGTCCCCTGTACGACAAGA CGCCCCGCTGTTGACATGAATGAATGTCCACCAATGTCCTCCTCCCCCCC CCCCCTCCGACTTCACCCCTCTGCAGAGCCCAGGCACCGCTCTAGACGTG GCCACCCTCGCGGCAAACCCGGGGCCAGGATCGGAGCCAATCCGACTGTG GCTCAAGGTGCTATCTGCGCTGCAGTACATGGACACGGTGAGACGAGTCG TCGCAAAGGATAGGAGGGAGTTGTTATTTTATTCAGTGTTAGGTTTGTGT GTGAGGTAGGTTGATGGAAGAGGGTCGTTGATTCTTCCCTGGTGCTTGCT TTGCTGAACGTACAGTTTCCTGTCCGTGCTTTACCTTGGGTGTAGACCCG GACACGGTGCCCCCCCCCCCCCACACACCTTTGCAACGATTTTACTACTC CGCCCCCCCCGCCCCCCCTACCCCCCGAAACGCAGAACGTCCGGTGGATC GGGTCGCACATCGAGTACGAGTCCCGGAGGTTCTACGGAGCGTTCGGTCT GTCCTTCTCCCTGGCCAGCGTCACCGACGCCCTCGTTGACCGCGCCCTCC GCAAGGCCTCCCCGAACAACGCCGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12743:749..4624+

>mRNA_Ecto-sp13_S_contig12743.2274.1 ID=mRNA_Ecto-sp13_S_contig12743.2274.1|Name=mRNA_Ecto-sp13_S_contig12743.2274.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1023bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12743:749..4624+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGATGGAGGAGGAGGGGGAGGAGGAGGAGGGGCTGGAAATCCTCCGCT
TTATGGCCCAACTTCTTCCCAGTCTCTGCCGGAGACCAACCAGCAACAGG
AGTCGAGGGCGCCGCCGCCGCGGCACAGCAGCATGTTCGGCCTGAGCACC
AACCTGGGGTACCTGTGGGTGAGCCACACGAGGGCGGGCGGGAGCAAGGT
GGTGCCTTACCGGGTGGCCCGAGACTCCCCGCTGGGGGTGCTGGTGGCGT
CGGACCCCATGCTCGCGAAGCCCCTGAGGCTCTCCCTGCACGGCCTGCTG
ATGAGGCTGCTCGTGGACCAGGAGTTCAAGAGGGACTTCGCGCTGGCGTT
CGCGCGGCTGTACGAGTACCTAAACTCCCTCTACTGCAAGGGCGTGGGCG
TGTCGGACGAGAGCATCTTCGGCTTCAGCGTCCAGACCTTCACCACGCCG
AGCCTGGTCCGTCTCCTGGCCGACGCCTCGGCGGAGACCCCCAGCGCGAT
TCTCCCCAACCCAGACCATGGAGTTCCAAAAGTTTGGCGCTTCTCCGAAA
CCCCGGGGCTGCTGGCCTTGCTCGCGAAGGCGCTGGTCAGGACCATGTGG
GACGCGGGATGCCGCGAGTGCGGGCGCGAGGGGGGGAGGGAGGCGGTCAT
CGCGGCCCAGCAGCCGGGCCCCCGGGGGGCGGCCCGCGGCGAGAACGCCT
TCCTTGAGCACGACATCACCAACCACCGGAGGTTCGTGCACGTGTTCCGG
GACCTGGAGTACGCTCTGCAGAGCCCAGGCACCGCTCTAGACGTGGCCAC
CCTCGCGGCAAACCCGGGGCCAGGATCGGAGCCAATCCGACTGTGGCTCA
AGGTGCTATCTGCGCTGCAGTACATGGACACGAACGTCCGGTGGATCGGG
TCGCACATCGAGTACGAGTCCCGGAGGTTCTACGGAGCGTTCGGTCTGTC
CTTCTCCCTGGCCAGCGTCACCGACGCCCTCGTTGACCGCGCCCTCCGCA
AGGCCTCCCCGAACAACGCCGCC
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