prot_Ecto-sp13_S_contig12667.2208.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12667.2208.1
Unique Nameprot_Ecto-sp13_S_contig12667.2208.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length457
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12667.2208.1 vs. uniprot
Match: A0A6H5KMY2_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMY2_9PHAE)

HSP 1 Score: 618 bits (1594), Expect = 1.080e-216
Identity = 412/457 (90.15%), Postives = 416/457 (91.03%), Query Frame = 0 
Query:    1 MAQATQLERDGIGRRVGLASVLLAEPFAAKLMYRHASERIPEACCERGILPRDHPIYAPLVQLLDLGESARPMLRANTFGVREVKAGVTRAVLPCVVALHARAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGQDWRGWYSDVPAIRRLVCTMLCRAMVRGSDEAAAVLMPAAKAAVKRMADQRWLWASLGELVQRSADASAXXXXXXXXXXXVKEGGGV-AAGVAGKKGRKEKGTVPRVLKSETLLLVLELFSTGLELALVTDAVFIKALELVAGLLPLASPXXXXXXXXXXXXXXXGGDKSKPKPSAPGKGALPALLPRSALEDVVNQAAARAARPPRRPLSEAEELRAKEAFAKVFAKSPPEWANKVSEYRAKLAEKSRKGGGXXXXXXXXXXXXXXXXXXXXXXTGRSSRPISIKGPKRGRQETGGEGDEGVDDTASRKKSRRVNV 456
            MAQATQLERDGIGRRVGLASVLLAEPFAAKLMYRHASERIPEACCERGILPRDHP+YAPLVQLLDLGESAR MLRANTFGVREVKA VTRAVLPCVVALHARAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     AGQDWRGWYSDVPAIRRLVCTMLCRAMVRGSDEAAAVLMPAAKAAVKRMADQRWLWASLGEL QRSADASA           V EGGGV AAGVAGKK  KEKGT+PRVLK ETLLLVLELFSTGLELALVTDAVFIKALELVAGLLPLASPXXXXXXXXXXXXXXXGGDKSKPKPSAPGKGA+ ALLPRSALEDVVNQAAARAARPPRRPLS+AEELRAKEAFAKV AKSPP WANKVSEYRAKLAEKSRKGGG         XXXXXXXXXXXXX GR SRPISIKGPKRGRQE GG GDEGVDDT SRKKSRRVNV
Sbjct:  148 MAQATQLERDGIGRRVGLASVLLAEPFAAKLMYRHASERIPEACCERGILPRDHPVYAPLVQLLDLGESARHMLRANTFGVREVKAEVTRAVLPCVVALHARAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----AGQDWRGWYSDVPAIRRLVCTMLCRAMVRGSDEAAAVLMPAAKAAVKRMADQRWLWASLGELAQRSADASAATAAAAAP---VNEGGGVVAAGVAGKKCGKEKGTMPRVLKPETLLLVLELFSTGLELALVTDAVFIKALELVAGLLPLASPXXXXXXXXXXXXXXXGGDKSKPKPSAPGKGAVTALLPRSALEDVVNQAAARAARPPRRPLSQAEELRAKEAFAKVLAKSPPGWANKVSEYRAKLAEKSRKGGGGKVVGDGGGXXXXXXXXXXXXXAGRPSRPISIKGPKRGRQEAGGGGDEGVDDTDSRKKSRRVNV 596
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BLAST of mRNA_Ecto-sp13_S_contig12667.2208.1 vs. uniprot
Match: D7FZE7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE7_ECTSI)

HSP 1 Score: 600 bits (1548), Expect = 5.100e-206
Identity = 410/459 (89.32%), Postives = 413/459 (89.98%), Query Frame = 0 
Query:    1 MAQATQLERDGIGRRVGLASVLLAEPFAAKLMYRHASERIPEACCERGILPRDHPIYAPLVQLLDLGESARPMLRANTFGVREVKAGVTRAVLPCVVALHARAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGQDWRGWYSDVPAIRRLVCTMLCRAMVRGSDEAAAVLMPAAKAAVKRMADQRWLWASLGELVQRSADASAXXXXXXXXXXXVKEGGGV-AAGVAGKKGRKEKGTVPRVLKSETLLLVLELFSTGLELALVTDAVFIKALELVAGLLPLASPXXXXXXXXXXXXXXX-GGDKSKPKPSAPGKGALPALLPRSALEDVVNQAAARAARPPRRPLSEAEELRAKEAFAKVFAKSPPEWANKVSEYRAKLAEKSRKGGGXXXXXXXXXXXXXXXXXXXXXXTGRSSRPISIKGPKRGRQETGGEGDEGVDDTASRKK-SRRVNV 456
            MAQATQLERDGIGRRVGLASVLLAEPFAAKLMYRHASERIPE CCERGILPRDHP+YAPLVQLLDLGESAR MLRANTFGVREVKAGVTRAVLPCVVALHARAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  AGQDWRGWYSDVPAIRRLVCTMLCRAMVRGSDEAA VLMPAAKAAVKRMADQRWLWASLGELVQRSADASA            K+GGGV AAGVAGKKG KEKG VPRVLK ETLLLVLELFSTGLELALVTDAVFIKALELVAGLLPLASPXXXXXXXXXXXXXXX GGDKSKPKPSAPGKGA+ ALLPRSALEDVVNQAAARAARPPRRPLSEAEELRAKEAFAKVFAKSPP WANKVSEYRAKLAEKSRKGG         XXXXXXXXXXXXXX      PISIKGPKRGRQETGG     VDD ASRKK SRRVNV
Sbjct:  402 MAQATQLERDGIGRRVGLASVLLAEPFAAKLMYRHASERIPEVCCERGILPRDHPVYAPLVQLLDLGESARHMLRANTFGVREVKAGVTRAVLPCVVALHARAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGQDWRGWYSDVPAIRRLVCTMLCRAMVRGSDEAAGVLMPAAKAAVKRMADQRWLWASLGELVQRSADASAAAVAAAP----AKDGGGVVAAGVAGKKGGKEKGAVPRVLKPETLLLVLELFSTGLELALVTDAVFIKALELVAGLLPLASPXXXXXXXXXXXXXXXXGGDKSKPKPSAPGKGAVAALLPRSALEDVVNQAAARAARPPRRPLSEAEELRAKEAFAKVFAKSPPGWANKVSEYRAKLAEKSRKGGAGKVVGGGDXXXXXXXXXXXXXXXXXXXXPISIKGPKRGRQETGGXXXXXVDDAASRKKKSRRVNV 856
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12667.2208.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KMY2_9PHAE1.080e-21690.15Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FZE7_ECTSI5.100e-20689.32Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010405Cofactor of BRCA1PFAMPF06209COBRA1coord: 14..107
e-value: 1.8E-5
score: 23.9
IPR010405Cofactor of BRCA1PANTHERPTHR13503NEGATIVE ELONGATION FACTOR COMPLEX MEMBER Bcoord: 17..208

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12667contigEcto-sp13_S_contig12667:213..2267 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12667.2208.1mRNA_Ecto-sp13_S_contig12667.2208.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12667 54..2467 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12667.2208.1 ID=prot_Ecto-sp13_S_contig12667.2208.1|Name=mRNA_Ecto-sp13_S_contig12667.2208.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=457bp
MAQATQLERDGIGRRVGLASVLLAEPFAAKLMYRHASERIPEACCERGIL
PRDHPIYAPLVQLLDLGESARPMLRANTFGVREVKAGVTRAVLPCVVALH
ARAAAAAGRRRAGGATDDTDGASAAETAAEKEEDAAAAAGQDWRGWYSDV
PAIRRLVCTMLCRAMVRGSDEAAAVLMPAAKAAVKRMADQRWLWASLGEL
VQRSADASAAAAAAAAAAAPVKEGGGVAAGVAGKKGRKEKGTVPRVLKSE
TLLLVLELFSTGLELALVTDAVFIKALELVAGLLPLASPPPPPAVDTAAA
AVASGGDKSKPKPSAPGKGALPALLPRSALEDVVNQAAARAARPPRRPLS
EAEELRAKEAFAKVFAKSPPEWANKVSEYRAKLAEKSRKGGGGKGVGGGG
GGRGGGGGDGGSGSTGRSSRPISIKGPKRGRQETGGEGDEGVDDTASRKK
SRRVNV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010405COBRA1