mRNA_Ecto-sp13_S_contig12667.2208.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12667.2208.1
Unique NamemRNA_Ecto-sp13_S_contig12667.2208.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12667.2208.1 vs. uniprot
Match: A0A6H5KMY2_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMY2_9PHAE)

HSP 1 Score: 627 bits (1617), Expect = 3.070e-218
Identity = 416/461 (90.24%), Postives = 420/461 (91.11%), Query Frame = 1 
Query:  148 ALAPMAQATQLERDGIGRRVGLASVLLAEPFAAKLMYRHASERIPEACCERGILPRDHPIYAPLVQLLDLGESARPMLRANTFGVREVKAGVTRAVLPCVVALHARAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGQDWRGWYSDVPAIRRLVCTMLCRAMVRGSDEAAAVLMPAAKAAVKRMADQRWLWASLGELVQRSADASAXXXXXXXXXXXVKEGGGV-AAGVAGKKGRKEKGTVPRVLKSETLLLVLELFSTGLELALVTDAVFIKALELVAGLLPLASPXXXXXXXXXXXXXXXGGDKSKPKPSAPGKGALPALLPRSALEDVVNQAAARAARPPRRPLSEAEELRAKEAFAKVFAKSPPEWANKVSEYRAKLAEKSRKGGGXXXXXXXXXXXXXXXXXXXXXXTGRSSRPISIKGPKRGRQETGGEGDEGVDDTASRKKSRRVNV 1527
            ALAPMAQATQLERDGIGRRVGLASVLLAEPFAAKLMYRHASERIPEACCERGILPRDHP+YAPLVQLLDLGESAR MLRANTFGVREVKA VTRAVLPCVVALHARAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     AGQDWRGWYSDVPAIRRLVCTMLCRAMVRGSDEAAAVLMPAAKAAVKRMADQRWLWASLGEL QRSADASA           V EGGGV AAGVAGKK  KEKGT+PRVLK ETLLLVLELFSTGLELALVTDAVFIKALELVAGLLPLASPXXXXXXXXXXXXXXXGGDKSKPKPSAPGKGA+ ALLPRSALEDVVNQAAARAARPPRRPLS+AEELRAKEAFAKV AKSPP WANKVSEYRAKLAEKSRKGGG         XXXXXXXXXXXXX GR SRPISIKGPKRGRQE GG GDEGVDDT SRKKSRRVNV
Sbjct:  144 ALAPMAQATQLERDGIGRRVGLASVLLAEPFAAKLMYRHASERIPEACCERGILPRDHPVYAPLVQLLDLGESARHMLRANTFGVREVKAEVTRAVLPCVVALHARAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----AGQDWRGWYSDVPAIRRLVCTMLCRAMVRGSDEAAAVLMPAAKAAVKRMADQRWLWASLGELAQRSADASAATAAAAAP---VNEGGGVVAAGVAGKKCGKEKGTMPRVLKPETLLLVLELFSTGLELALVTDAVFIKALELVAGLLPLASPXXXXXXXXXXXXXXXGGDKSKPKPSAPGKGAVTALLPRSALEDVVNQAAARAARPPRRPLSQAEELRAKEAFAKVLAKSPPGWANKVSEYRAKLAEKSRKGGGGKVVGDGGGXXXXXXXXXXXXXAGRPSRPISIKGPKRGRQEAGGGGDEGVDDTDSRKKSRRVNV 596
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BLAST of mRNA_Ecto-sp13_S_contig12667.2208.1 vs. uniprot
Match: D7FZE7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE7_ECTSI)

HSP 1 Score: 609 bits (1571), Expect = 1.470e-207
Identity = 414/463 (89.42%), Postives = 417/463 (90.06%), Query Frame = 1 
Query:  148 ALAPMAQATQLERDGIGRRVGLASVLLAEPFAAKLMYRHASERIPEACCERGILPRDHPIYAPLVQLLDLGESARPMLRANTFGVREVKAGVTRAVLPCVVALHARAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGQDWRGWYSDVPAIRRLVCTMLCRAMVRGSDEAAAVLMPAAKAAVKRMADQRWLWASLGELVQRSADASAXXXXXXXXXXXVKEGGGV-AAGVAGKKGRKEKGTVPRVLKSETLLLVLELFSTGLELALVTDAVFIKALELVAGLLPLASPXXXXXXXXXXXXXXX-GGDKSKPKPSAPGKGALPALLPRSALEDVVNQAAARAARPPRRPLSEAEELRAKEAFAKVFAKSPPEWANKVSEYRAKLAEKSRKGGGXXXXXXXXXXXXXXXXXXXXXXTGRSSRPISIKGPKRGRQETGGEGDEGVDDTASRKK-SRRVNV 1527
            ALAPMAQATQLERDGIGRRVGLASVLLAEPFAAKLMYRHASERIPE CCERGILPRDHP+YAPLVQLLDLGESAR MLRANTFGVREVKAGVTRAVLPCVVALHARAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  AGQDWRGWYSDVPAIRRLVCTMLCRAMVRGSDEAA VLMPAAKAAVKRMADQRWLWASLGELVQRSADASA            K+GGGV AAGVAGKKG KEKG VPRVLK ETLLLVLELFSTGLELALVTDAVFIKALELVAGLLPLASPXXXXXXXXXXXXXXX GGDKSKPKPSAPGKGA+ ALLPRSALEDVVNQAAARAARPPRRPLSEAEELRAKEAFAKVFAKSPP WANKVSEYRAKLAEKSRKGG         XXXXXXXXXXXXXX      PISIKGPKRGRQETGG     VDD ASRKK SRRVNV
Sbjct:  398 ALAPMAQATQLERDGIGRRVGLASVLLAEPFAAKLMYRHASERIPEVCCERGILPRDHPVYAPLVQLLDLGESARHMLRANTFGVREVKAGVTRAVLPCVVALHARAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGQDWRGWYSDVPAIRRLVCTMLCRAMVRGSDEAAGVLMPAAKAAVKRMADQRWLWASLGELVQRSADASAAAVAAAP----AKDGGGVVAAGVAGKKGGKEKGAVPRVLKPETLLLVLELFSTGLELALVTDAVFIKALELVAGLLPLASPXXXXXXXXXXXXXXXXGGDKSKPKPSAPGKGAVAALLPRSALEDVVNQAAARAARPPRRPLSEAEELRAKEAFAKVFAKSPPGWANKVSEYRAKLAEKSRKGGAGKVVGGGDXXXXXXXXXXXXXXXXXXXXPISIKGPKRGRQETGGXXXXXVDDAASRKKKSRRVNV 856
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12667.2208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KMY2_9PHAE3.070e-21890.24Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FZE7_ECTSI1.470e-20789.42Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12667contigEcto-sp13_S_contig12667:54..2467 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score606.3
Seed ortholog evalue1.2e-170
Seed eggNOG ortholog2880.D7FZE7
Preferred nameBPTF
Model size1730
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.histone acetyltransferase activity
EggNOG OGsCOG5076@1,KOG1472@2759
Cds size1371
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462676.5330276-UTR-Ecto-sp13_S_contig12667:53..2121681462676.5330276-UTR-Ecto-sp13_S_contig12667:53..212Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12667 54..212 +
1681462676.5667667-UTR-Ecto-sp13_S_contig12667:2267..24671681462676.5667667-UTR-Ecto-sp13_S_contig12667:2267..2467Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12667 2268..2467 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462676.542551-CDS-Ecto-sp13_S_contig12667:212..5851681462676.542551-CDS-Ecto-sp13_S_contig12667:212..585Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12667 213..585 +
1681462676.5506096-CDS-Ecto-sp13_S_contig12667:919..12961681462676.5506096-CDS-Ecto-sp13_S_contig12667:919..1296Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12667 920..1296 +
1681462676.5587244-CDS-Ecto-sp13_S_contig12667:1646..22671681462676.5587244-CDS-Ecto-sp13_S_contig12667:1646..2267Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12667 1647..2267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12667.2208.1prot_Ecto-sp13_S_contig12667.2208.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12667 213..2267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12667.2208.1

>prot_Ecto-sp13_S_contig12667.2208.1 ID=prot_Ecto-sp13_S_contig12667.2208.1|Name=mRNA_Ecto-sp13_S_contig12667.2208.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=457bp
MAQATQLERDGIGRRVGLASVLLAEPFAAKLMYRHASERIPEACCERGIL
PRDHPIYAPLVQLLDLGESARPMLRANTFGVREVKAGVTRAVLPCVVALH
ARAAAAAGRRRAGGATDDTDGASAAETAAEKEEDAAAAAGQDWRGWYSDV
PAIRRLVCTMLCRAMVRGSDEAAAVLMPAAKAAVKRMADQRWLWASLGEL
VQRSADASAAAAAAAAAAAPVKEGGGVAAGVAGKKGRKEKGTVPRVLKSE
TLLLVLELFSTGLELALVTDAVFIKALELVAGLLPLASPPPPPAVDTAAA
AVASGGDKSKPKPSAPGKGALPALLPRSALEDVVNQAAARAARPPRRPLS
EAEELRAKEAFAKVFAKSPPEWANKVSEYRAKLAEKSRKGGGGKGVGGGG
GGRGGGGGDGGSGSTGRSSRPISIKGPKRGRQETGGEGDEGVDDTASRKK
SRRVNV*
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mRNA from alignment at Ecto-sp13_S_contig12667:54..2467+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12667.2208.1 ID=mRNA_Ecto-sp13_S_contig12667.2208.1|Name=mRNA_Ecto-sp13_S_contig12667.2208.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2414bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12667:54..2467+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGGCGGCGGCGGCGGCGGCGGCGCTGCCGCCACCGCCACCACACCCAC
CAACAGCAACAAGCGGAAGAGCGGTAGCGGGGGCGGGGGCAGTTCCCAGG
ACGACGCAAGAGGAAGCGGCGGGGGCGGCGGCGGCGGCGGCGGCGCGGCC
CTAGCCCCGATGGCCCAGGCGACCCAGCTGGAAAGGGACGGTATCGGCCG
CCGCGTGGGGCTCGCGTCCGTGCTCCTCGCCGAGCCGTTCGCGGCTAAGC
TCATGTACCGGCACGCGTCGGAGAGGATTCCGGAGGCGTGCTGCGAGCGG
GGCATCCTCCCGCGCGACCACCCGATCTACGCGCCGCTGGTGCAGCTCCT
GGACCTGGGGGAGAGCGCCCGCCCCATGCTCAGGGCCAACACCTTCGGCG
TGCGCGAGGTTAAGGCCGGGGTGACGAGGGCCGTGCTGCCGTGCGTCGTG
GCCCTGCACGCGCGGGCGGCGGCGGCGGCGGGCAGGCGGCGGGCCGGCGG
GGCTACCGACGACACCGACGGTGCCAGCGCAGGTGATCGAATGGATCCGA
TTGTCGTTGTCGTTGTTGTCTTTGTTGTTGCTGTTCTTTTGATGTCGTTG
TTGTTAGTGGTGATGGTGGTGGTGGTGGTGGTGTTGGCGTGGATGTTGGT
GCTTTTCTGTTTTTGTTTTCTTTGATCACGTAGGTAGTCGGTGGACCACC
CTTTAATCCGGAGCGGACCTTTGACTAATACTGCAGGCAGCACACAACAC
CCGTCACGACAAAAAATTCCCCTTCCACCGCCGCCTCCCGCTCCTCCTCC
TCCCCCTCCTCCTCCTCCTCCTCCTGTGTCGCCTCCTCTGCTTGTCGATC
GTATCATCATCATCAGCCGAGACCGCTGCAGAGAAGGAAGAGGACGCAGC
CGCCGCGGCCGGCCAGGACTGGCGGGGGTGGTACAGCGATGTCCCCGCCA
TTCGGCGGCTGGTCTGCACGATGCTGTGCCGCGCGATGGTGAGGGGGAGC
GACGAGGCCGCCGCGGTGCTGATGCCGGCGGCAAAGGCGGCGGTGAAGAG
GATGGCGGACCAGCGGTGGCTTTGGGCGAGCCTGGGCGAGCTGGTGCAGA
GGAGCGCGGACGCATCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCG
CCAGTGAAAGAGGGCGGAGGCGTCGCGGCCGGTGTAGCCGGGAAGAAAGG
CAGAAAAGAGAAAGGGACGGTGCCGCGGGTTCTAAAGTCAGAGGTGACCA
GAGTTGTTCTTGTTGTTTGGCGGTGGAAAATACAAGAGGTGCTACTGTCG
CTGCTGGTGCAGCTGCAGTTCTTGGTTTGTTCCCCTTCGCGAGACAACAG
ACAGTTTTGAAATCGGTGCTGTTTATTCCCCAGTTCACAACGGTTGGGCA
ACTGATGGATCAACAAGCGACGCTCTGTTTTTCCTCTTCTCCGTCGGCAG
TTTCAAGCAATACCGGTTTCGCGCACACACGCGCGGCCCATGATCTTCCA
CCTTTAAACATCGAGCCCATTCCTCTCTCGGCTGTCTCTCTCTCTTACCC
CCCCACCCCCCACTCGCCCTCCCTTACTCCGATCCAAACCCAGACGCTGC
TTCTCGTCTTGGAGCTTTTTTCGACAGGGTTGGAGTTGGCGCTCGTCACC
GACGCCGTGTTTATCAAGGCACTCGAACTTGTCGCCGGCCTCTTGCCGCT
GGCGTCCCCCCCCCCACCGCCTGCTGTCGACACCGCGGCTGCTGCTGTCG
CCAGCGGCGGCGACAAGTCGAAGCCAAAGCCGTCCGCGCCGGGAAAAGGC
GCCCTTCCCGCTCTCCTGCCGCGCTCGGCACTGGAGGACGTCGTGAACCA
AGCGGCGGCTCGGGCGGCCCGGCCGCCCAGACGGCCGCTCTCCGAGGCGG
AGGAGTTGCGAGCCAAGGAGGCTTTCGCCAAGGTTTTCGCCAAGTCGCCG
CCCGAGTGGGCAAACAAGGTTTCCGAGTACCGGGCAAAGCTCGCAGAGAA
GTCGAGGAAGGGCGGGGGGGGTAAGGGAGTGGGAGGTGGAGGTGGGGGCA
GGGGCGGGGGAGGCGGCGATGGTGGGAGCGGAAGCACTGGGCGGTCATCC
CGACCCATCTCGATCAAGGGTCCCAAGAGGGGGCGACAGGAGACCGGCGG
CGAGGGTGATGAGGGGGTGGACGATACTGCCAGCCGGAAGAAGAGTCGGC
GGGTTAATGTGTGACGTTTTGGAGCTATGTCGCTGCTGTGTATCGATCGA
AAGAAAGAGATGGAAGAGTGCATGATGGGAATCATCCCGGAGAGGAAGAT
GGAGTGGGGGGGTATACTCGTGCAAACCGTTGTCATTAGACCGTGGACCT
CGCATCCCTACAAAGCCGAGGCGGAGCACGCCGGGTTCTCACCGGACCAG
GGAGTGAGAGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12667:54..2467+

>mRNA_Ecto-sp13_S_contig12667.2208.1 ID=mRNA_Ecto-sp13_S_contig12667.2208.1|Name=mRNA_Ecto-sp13_S_contig12667.2208.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1371bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12667:54..2467+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCCAGGCGACCCAGCTGGAAAGGGACGGTATCGGCCGCCGCGTGGG
GCTCGCGTCCGTGCTCCTCGCCGAGCCGTTCGCGGCTAAGCTCATGTACC
GGCACGCGTCGGAGAGGATTCCGGAGGCGTGCTGCGAGCGGGGCATCCTC
CCGCGCGACCACCCGATCTACGCGCCGCTGGTGCAGCTCCTGGACCTGGG
GGAGAGCGCCCGCCCCATGCTCAGGGCCAACACCTTCGGCGTGCGCGAGG
TTAAGGCCGGGGTGACGAGGGCCGTGCTGCCGTGCGTCGTGGCCCTGCAC
GCGCGGGCGGCGGCGGCGGCGGGCAGGCGGCGGGCCGGCGGGGCTACCGA
CGACACCGACGGTGCCAGCGCAGCCGAGACCGCTGCAGAGAAGGAAGAGG
ACGCAGCCGCCGCGGCCGGCCAGGACTGGCGGGGGTGGTACAGCGATGTC
CCCGCCATTCGGCGGCTGGTCTGCACGATGCTGTGCCGCGCGATGGTGAG
GGGGAGCGACGAGGCCGCCGCGGTGCTGATGCCGGCGGCAAAGGCGGCGG
TGAAGAGGATGGCGGACCAGCGGTGGCTTTGGGCGAGCCTGGGCGAGCTG
GTGCAGAGGAGCGCGGACGCATCGGCGGCGGCGGCGGCGGCGGCGGCGGC
GGCAGCGCCAGTGAAAGAGGGCGGAGGCGTCGCGGCCGGTGTAGCCGGGA
AGAAAGGCAGAAAAGAGAAAGGGACGGTGCCGCGGGTTCTAAAGTCAGAG
ACGCTGCTTCTCGTCTTGGAGCTTTTTTCGACAGGGTTGGAGTTGGCGCT
CGTCACCGACGCCGTGTTTATCAAGGCACTCGAACTTGTCGCCGGCCTCT
TGCCGCTGGCGTCCCCCCCCCCACCGCCTGCTGTCGACACCGCGGCTGCT
GCTGTCGCCAGCGGCGGCGACAAGTCGAAGCCAAAGCCGTCCGCGCCGGG
AAAAGGCGCCCTTCCCGCTCTCCTGCCGCGCTCGGCACTGGAGGACGTCG
TGAACCAAGCGGCGGCTCGGGCGGCCCGGCCGCCCAGACGGCCGCTCTCC
GAGGCGGAGGAGTTGCGAGCCAAGGAGGCTTTCGCCAAGGTTTTCGCCAA
GTCGCCGCCCGAGTGGGCAAACAAGGTTTCCGAGTACCGGGCAAAGCTCG
CAGAGAAGTCGAGGAAGGGCGGGGGGGGTAAGGGAGTGGGAGGTGGAGGT
GGGGGCAGGGGCGGGGGAGGCGGCGATGGTGGGAGCGGAAGCACTGGGCG
GTCATCCCGACCCATCTCGATCAAGGGTCCCAAGAGGGGGCGACAGGAGA
CCGGCGGCGAGGGTGATGAGGGGGTGGACGATACTGCCAGCCGGAAGAAG
AGTCGGCGGGTTAATGTGTGA
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