mRNA_Ecto-sp13_S_contig12665.2206.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12665.2206.1
Unique NamemRNA_Ecto-sp13_S_contig12665.2206.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12665.2206.1 vs. uniprot
Match: D7FJ56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ56_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 7.710e-64
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 1 
Query:    1 MASASPSSYFSLEDQFTFYASYHSNRVNKFIHLLCIWPIIWTGCALMTQCSFGKLPSEVLEHLPLRDEAWNLHLGTPVVMVYIFVYLVMDPFAGGVA 291
            MASASPSSYFSLEDQFTFYASYHSNRVNKFIHLLCIWPIIWTGCALMTQCSFGKLP+EVLE LPLRDEAWNLHLGTPVVMVYIFVYLVMDPFAGGVA
Sbjct:    1 MASASPSSYFSLEDQFTFYASYHSNRVNKFIHLLCIWPIIWTGCALMTQCSFGKLPAEVLEQLPLRDEAWNLHLGTPVVMVYIFVYLVMDPFAGGVA 97
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BLAST of mRNA_Ecto-sp13_S_contig12665.2206.1 vs. uniprot
Match: A0A6H5L5Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Z3_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 6.610e-49
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 1 
Query:   67 HSNRVNKFIHLLCIWPIIWTGCALMTQCSFGKLPSEVLEHLPLRDEAWNLHLGTPVVMVYIFVYLVMDPFAGGVA 291
            HSNRVNKFIHLLCIWPIIWTGCALMTQCSFGKLPSEVLE LPLRDEAWNLHLGTPVVMVYIFVYLVMDPFAGGVA
Sbjct:   17 HSNRVNKFIHLLCIWPIIWTGCALMTQCSFGKLPSEVLEQLPLRDEAWNLHLGTPVVMVYIFVYLVMDPFAGGVA 91
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BLAST of mRNA_Ecto-sp13_S_contig12665.2206.1 vs. uniprot
Match: A0A553PRT3_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553PRT3_TIGCA)

HSP 1 Score: 77.8 bits (190), Expect = 1.290e-15
Identity = 42/90 (46.67%), Postives = 56/90 (62.22%), Query Frame = 1 
Query:   28 FSLEDQFTFYASYHSNRVNKFIHLLCIWPIIWTGCALM---TQCSFGKLPS-EVLEHLPLRDEAWNLHLGTPVVMVYIFVYLVMDPFAGG 285
            F LE QFTFYASYH+NRVN  IHL+C+WPI+ T   L+   + C    LP    L++LP   +A  L+L   + ++YI  Y  M+P AGG
Sbjct:    8 FDLEKQFTFYASYHANRVNVAIHLVCVWPILATAMLLLQLSSYCFLTHLPMPHALQNLPFGLQA-PLNLALVMAIIYIVSYFAMEPIAGG 96
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BLAST of mRNA_Ecto-sp13_S_contig12665.2206.1 vs. uniprot
Match: A0A835ZKQ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKQ2_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 9.570e-12
Identity = 31/87 (35.63%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:   34 LEDQFTFYASYHSNRVNKFIHLLCIWPIIWTGCALMTQCS-FGKLPSEVLEHLPLRDEAWNLHLGTPVVMVYIFVYLVMDPFAGGVA 291
            L+    FY +YH N VN+ IH++CIWPI+WT  AL         +P  +++  P   +A  LH+G  +   Y+ +Y +M+P  G  A
Sbjct:    9 LDKHLAFYCAYHRNTVNEAIHMVCIWPIVWTMFALFRMLGPTAPVPHALVDMAPALGDALVLHIGWLIAAAYVLLYPLMEPRMGTAA 95
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BLAST of mRNA_Ecto-sp13_S_contig12665.2206.1 vs. uniprot
Match: A0A0L0DNL2_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DNL2_THETB)

HSP 1 Score: 65.5 bits (158), Expect = 5.930e-11
Identity = 33/92 (35.87%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:   34 LEDQFTFYASYHSNRVNKFIHLLCIWPIIWTGCALMTQCSFGKLPSEVLEHL------PLRDEAWNLHLGTPVVMVYIFVYLVMDPFAGGVA 291
            LE  F FYASYHS+ +N  +H++C+WP++WTG A++   +     +E ++        P     W L +GT   +VY+  Y+V+D  AG +A
Sbjct:    4 LEKNFAFYASYHSDTINVAVHIICVWPLLWTGQAMLALLALPGPVAEAVDSALPPAVAPYAGANWAL-VGT---LVYVLYYIVLDHKAGFLA 91
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BLAST of mRNA_Ecto-sp13_S_contig12665.2206.1 vs. uniprot
Match: A0A1D2MR13_ORCCI (Uncharacterized protein n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2MR13_ORCCI)

HSP 1 Score: 63.9 bits (154), Expect = 2.050e-10
Identity = 38/86 (44.19%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:   34 LEDQFTFYASYHSNRVNKFIHLLCIWPIIWTGCALMTQCSFGKLPSEVLEHLPLRDEAWNLHLGTPVVMVYIFVYLVMDPFAGGVA 291
            LE+QFTFYASYH   VN+ IH++C+WPI+WT   + TQ     +P E     P+     N+ L T   + Y  VY+VMD  AG +A
Sbjct:    6 LEEQFTFYASYHHAFVNQLIHIVCVWPILWTAL-VFTQ----YIPIEAPISTPVHPA--NIALFTA--LFYAAVYVVMDKKAGSLA 82
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BLAST of mRNA_Ecto-sp13_S_contig12665.2206.1 vs. uniprot
Match: K8YRY3_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YRY3_NANGC)

HSP 1 Score: 63.5 bits (153), Expect = 2.250e-10
Identity = 35/86 (40.70%), Postives = 50/86 (58.14%), Query Frame = 1 
Query:   34 LEDQFTFYASYHSNRVNKFIHLLCIWPII-------WTGCALMTQCSFGKLPSEVLEHLPLRDEAWNLHLGTPVVMVYIFVYLVMD 270
            +E QFTFYA+YH N VNK+IH++CIWP+I       WT   +++Q S   LPS  L +L ++     L+       VYI  YL ++
Sbjct:   11 IEKQFTFYAAYHDNTVNKWIHIVCIWPLIFTGLMLLWTNAGIVSQIS---LPSS-LTNLSVQGVPLTLNWALLAACVYIAFYLSLE 92
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BLAST of mRNA_Ecto-sp13_S_contig12665.2206.1 vs. uniprot
Match: A0A8J5E5M7_9DIPT (Uncharacterized protein n=2 Tax=Bradysia TaxID=35571 RepID=A0A8J5E5M7_9DIPT)

HSP 1 Score: 63.2 bits (152), Expect = 4.810e-10
Identity = 37/92 (40.22%), Postives = 52/92 (56.52%), Query Frame = 1 
Query:   34 LEDQFTFYASYHSNRVNKFIHLLCIWPIIWTGCALMTQCSFGKLPSEVLEHL---PLRDEAWNLH-LGTPVV--MVYIFVYLVMDPFAGGVA 291
            LE+QFTFYA+YH   VNK IH++C+WPI+W+   L          SE + ++   P       +H L  P V  ++Y  VY++MD  AG VA
Sbjct:    6 LEEQFTFYAAYHHTTVNKLIHIVCVWPILWSFYVL----------SEYIPYVAPAPFNSFVSAIHPLNVPFVAAVIYAAVYIMMDKKAGVVA 87
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BLAST of mRNA_Ecto-sp13_S_contig12665.2206.1 vs. uniprot
Match: W7TUZ4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUZ4_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 5.040e-10
Identity = 35/86 (40.70%), Postives = 50/86 (58.14%), Query Frame = 1 
Query:   34 LEDQFTFYASYHSNRVNKFIHLLCIWPII-------WTGCALMTQCSFGKLPSEVLEHLPLRDEAWNLHLGTPVVMVYIFVYLVMD 270
            +E QFTFYA+YH N VNK+IH++CIWP+I       WT   +++Q S   LPS  L +L ++     L+       VYI  YL ++
Sbjct:   11 IEKQFTFYAAYHDNTVNKWIHIVCIWPLIFTGLMLLWTNAGIVSQIS---LPSS-LTNLSVQGVPLTLNWALLAACVYIAFYLSLE 92
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BLAST of mRNA_Ecto-sp13_S_contig12665.2206.1 vs. uniprot
Match: A0A438D998_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438D998_VITVI)

HSP 1 Score: 62.4 bits (150), Expect = 1.170e-9
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 1 
Query:   25 YFSLEDQFTFYASYHSNRVNKFIHLLCIWPIIWTGCALM--TQCSFGKLPSEVLEHLPLRDEAWNLHLGTPVVMVYIFVYLVMDPFAGGVA 291
            +F LE+ F FY +YHSNR+N  IH++C+WPI++T   L+  T   F   P E+   L         ++G  + ++Y   Y+  DP AG +A
Sbjct:    7 FFDLENHFAFYGAYHSNRINIAIHMMCVWPILFTALLLLYFTPSLFNLPPFEL--SLSGYKVVLLFNIGFLLTLIYSVFYVRFDPRAGSLA 95
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12665.2206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ56_ECTSI7.710e-6497.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5Z3_9PHAE6.610e-4998.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A553PRT3_TIGCA1.290e-1546.67Uncharacterized protein n=1 Tax=Tigriopus californ... [more]
A0A835ZKQ2_9STRA9.570e-1235.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0L0DNL2_THETB5.930e-1135.87Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A1D2MR13_ORCCI2.050e-1044.19Uncharacterized protein n=1 Tax=Orchesella cincta ... [more]
K8YRY3_NANGC2.250e-1040.70Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A8J5E5M7_9DIPT4.810e-1040.22Uncharacterized protein n=2 Tax=Bradysia TaxID=355... [more]
W7TUZ4_9STRA5.040e-1040.70Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A438D998_VITVI1.170e-936.26Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12665contigEcto-sp13_S_contig12665:2650..4976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score200.7
Seed ortholog evalue3.2e-49
Seed eggNOG ortholog2880.D7FJ56
Model size291
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006629,GO:0006643,GO:0006665,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016042,GO:0030149,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046466,GO:0046519,GO:0046521,GO:0071704,GO:0097164,GO:0098827,GO:1901564,GO:1901565,GO:1901575
Exons3
EggNOG free text desc.sphingoid catabolic process
EggNOG OGsCOG4539@1,KOG3292@2759
Cds size291
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462676.4315152-CDS-Ecto-sp13_S_contig12665:2649..27131681462676.4315152-CDS-Ecto-sp13_S_contig12665:2649..2713Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12665 2650..2713 +
1681462676.4422474-CDS-Ecto-sp13_S_contig12665:4194..43921681462676.4422474-CDS-Ecto-sp13_S_contig12665:4194..4392Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12665 4195..4392 +
1681462676.4541876-CDS-Ecto-sp13_S_contig12665:4947..49761681462676.4541876-CDS-Ecto-sp13_S_contig12665:4947..4976Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12665 4948..4976 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12665.2206.1prot_Ecto-sp13_S_contig12665.2206.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12665 2650..4976 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12665.2206.1

>prot_Ecto-sp13_S_contig12665.2206.1 ID=prot_Ecto-sp13_S_contig12665.2206.1|Name=mRNA_Ecto-sp13_S_contig12665.2206.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
MASASPSSYFSLEDQFTFYASYHSNRVNKFIHLLCIWPIIWTGCALMTQC
SFGKLPSEVLEHLPLRDEAWNLHLGTPVVMVYIFVYLVMDPFAGGVA
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mRNA from alignment at Ecto-sp13_S_contig12665:2650..4976+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12665.2206.1 ID=mRNA_Ecto-sp13_S_contig12665.2206.1|Name=mRNA_Ecto-sp13_S_contig12665.2206.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12665:2650..4976+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTCGGCTTCTCCCTCTTCATACTTCTCGCTGGAAGACCAGTTCAC
CTTCTACGCCTCATGTGGGTTTGCGCTTACTGTAGCTAGGCTGTAGCACC
TGTTTTTGTGGGTCGAAGCTCTTCTGGCATTTTGGTCGTTCGTCCCGGCG
TTCCAAGTTGCGCCGCCGCCGGTCCTATCACAGGGCATACCCTCTCAACC
ACTTTCGTGCACGATCTCATCGCAACCGTCAACGATGCAGGTTAGCGCCG
CCATGAATAGCTCTCACTCTCCGCGGCTCACGCATGTCGCCCGTGCTTTT
TCGTTTCTCCGGGCGCACGCCAGATAATACCTAGGTGTACAGCAATTTTA
CAACGAATCGGCATATTGTTCGCGAATGTCACATTGTCCCGTTCGTTGCG
ATGTTTCTTCGGATGAACGCCAACCGATGATACTATTATATCATTCCAGC
GGGTAGTTTTTTCCGAAGGTTGGCTTGATCTGGGAAAGCCTTCGTCCCAT
TCGAGTCTGAACTGGGCCATACTTGCGCTCTCCATCATCTCCACCACAGC
TGAGCTCTTGTACATGTAGAAGTAGCCTACGCTATTGCAGTACACATAAA
GGCAGTATTGAAGTATTGGAGGACTTTCTTCGATCTGGCAACAAAGTTGT
TTACGCAGCGGTGATGTTGCGGGGTTATCCTCGCGTCGATTCGACGAATT
TGTTCATTCAAGGATAACAGATAAGGGGCAAATCGGTGCTTCCGGCTTTG
GACACAGAAGCGGCCGAACCATGCCGAAGCTTCTTGGCTTTTTCTTGCTT
ATTTCTTGTCCTAATCCAAGAGAAGGTGGTCAACAGCCCGGGAGAACAAA
ACGTCCGCGAATGCAGCATGCAGACGTGTCTGTTTGCTTCGAGCTCACCA
TGGCATGGCCACAATATTGCTTCCTTCCCGTCCCTCGCTTCTTCGCTGTT
GCTGCTGCTGCGATCCGACGATCTGGCTGTACGAGTTGTTGGTACGATGT
CGTTGAATATCCGAATGGACATCAATGTGACACGAGCTTCACTGCTAGCT
CGCGCAAACATGACCTGGCGGATGGCGTCCTAACCTGCACATTTCGGTTC
ATAGAAGACTTCGACGTTTGTGTAGATGATAGCAGACGAAAGCCACAATC
GGCTCCCTGCTTGTCAGCACTACAGTTCGTCTCAGAAACAACATTCCCAC
AGTGCCCACTCCGCGAAATACACGGCATTCGCTAGTTTGACCAAAAGACA
GAGGGGCCTGTCCACGTACAATACGTGTCGCCGCTGAGGATATGCTCATT
TTGCGCGACGCTCGACCCTGTTTTTTTTTCTGTGGGGGAGTCTTGAACCC
AGTAGCGACTACAAACACAAGAGTTTAGCGCAGGATTCTTGACTAAGCAT
CCGTTCTTTTTGTCAAATGGTTCTTTGTTTGAGTTGATCTGTTAATTTTG
CCTAGTGTTCTTACCTCGCTCCCAGGTGCTAGGTGGTGGACCGTACTCTG
TGCTTACCAACGGTTTTGGCCCGTCTCTCTTGTTTCGCCGCGCAGACCAC
AGCAACCGAGTCAACAAGTTCATCCACCTGCTGTGTATCTGGCCCATCAT
CTGGACCGGCTGCGCCCTCATGACTCAGTGTTCTTTCGGAAAGCTTCCCT
CGGAGGTCTTGGAGCACCTTCCCCTTAGGGACGAAGCCTGGAACCTGCAC
CTTGGTACTCCGGTTGTGATGGTCTACATCTTCGTCTATTTGGGTGAGAA
CTGAAGGTATTAGGTCTTCTGGGGGCTCAGCCTTCTGAAGTTTTTTAGCT
CAATGCAAGTGCAATTTCTAGCGTTGAGTATGGCTGTTCCCTCACACCAA
GATGCATTCAATGCAACGGCCCCTGCTGCCCTTGTCGAGCCGTTTCCAAA
CTTGTTTACTGTTGTTACAGACGAGTGCACGTTGAAACGTTCTTGTGGGG
CTGCTACAGTTTCTATGGTGCAACGTCCGACGCCATGAAACGCAGCTAAC
TGTTCGGTGTGACAGCAGTTGCGACGCACACCACCTTCAGCCGGACCAAC
CACTACCGTAGACCCTCTTGTTGTGCCCATGAGAAAGCCACAGCACCGCT
TTCTCAGATGGTATCTCACTCTTCGGACAAGCGTATAATAGCGGTTTCTT
CGGTTCTTCTCACAGGACTCCTGTTTGCCCCCCCAACTACCTATCGCTCT
TACGTATGATGTTGCCTCCGGTCGTACGGCAACACGTCGCAAACTATGTA
CCGTTCCAACTTACCGCCGTTTCAACTTACTTGCCATTGTTGTGGCAGTG
ATGGACCCCTTCGCGGGAGGCGTCGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12665:2650..4976+

>mRNA_Ecto-sp13_S_contig12665.2206.1 ID=mRNA_Ecto-sp13_S_contig12665.2206.1|Name=mRNA_Ecto-sp13_S_contig12665.2206.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12665:2650..4976+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTCGGCTTCTCCCTCTTCATACTTCTCGCTGGAAGACCAGTTCAC
CTTCTACGCCTCATACCACAGCAACCGAGTCAACAAGTTCATCCACCTGC
TGTGTATCTGGCCCATCATCTGGACCGGCTGCGCCCTCATGACTCAGTGT
TCTTTCGGAAAGCTTCCCTCGGAGGTCTTGGAGCACCTTCCCCTTAGGGA
CGAAGCCTGGAACCTGCACCTTGGTACTCCGGTTGTGATGGTCTACATCT
TCGTCTATTTGGTGATGGACCCCTTCGCGGGAGGCGTCGCC
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