mRNA_Ecto-sp13_S_contig10199.219.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10199.219.1
Unique NamemRNA_Ecto-sp13_S_contig10199.219.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10199.219.1 vs. uniprot
Match: D8LLR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLR2_ECTSI)

HSP 1 Score: 283 bits (724), Expect = 2.440e-80
Identity = 418/479 (87.27%), Postives = 421/479 (87.89%), Query Frame = 1 
Query:   10 WAEEGGAKNLRLEVKGHGDADDGSEWGNYYSWQGPDSRAPSSGQAKDGTFGVRRQSNQSEGEGGKHLGAWATDSSGAPTGGXXXXX-QASFPSHPSPLAGAGEERTSETRWRKQANGASANDAAAASSSRRTGRSLSARDLRAAAXLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--PMLSDFDTLTLGGSERPVTPVGEESQTTYQLPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRDNEGSPTHFGVAERGXXXXXXXXXXXXXXXXXXXXXXXXRVTYGWAGAAGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSATGPSSPRLIKGGFGPANPLSWTAKDNASGAGGNTSFSHT 1437
            WA   GAKNLRLEVKG GD DDGSEWGNYYSWQGPDSRAPSSGQAKDGTFGVRRQSNQSEGEGG++LG WATDSSGAP   XXXXX QASFPSHPSPLAGAGEERTSETRWRKQANGASA DAA  SSSRRTGRSLSARDLRAAA LDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  PMLSDFDTLTLGGSERPVTPVGEESQTTYQLPA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                   XXXXXXXXXXXXXXXXXXXXXXXR+TYGWAGAA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  XXXXXXXXXXXXXXXXXXXXX PSATGPSSPRLIKGGFGPANPLSWTAKDNASG GGNTSFSHT
Sbjct:  904 WAGGRGAKNLRLEVKGDGDGDDGSEWGNYYSWQGPDSRAPSSGQAKDGTFGVRRQSNQSEGEGGRNLGPWATDSSGAPXXXXXXXXXQASFPSHPSPLAGAGEERTSETRWRKQANGASATDAAG-SSSRRTGRSLSARDLRAAAALDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPMLSDFDTLTLGGSERPVTPVGEESQTTYQLPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXRITYGWAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANSGPVRRKERGDGPSSPXXXXXXXXXXXXXXXXXXXXXQPSATGPSSPRLIKGGFGPANPLSWTAKDNASGTGGNTSFSHT 1379
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BLAST of mRNA_Ecto-sp13_S_contig10199.219.1 vs. uniprot
Match: A0A6H5JEL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL9_9PHAE)

HSP 1 Score: 282 bits (721), Expect = 6.260e-80
Identity = 401/466 (86.05%), Postives = 402/466 (86.27%), Query Frame = 1 
Query:   34 NLRLEVKGHGDADDGSEWGNYYSWQGPDSRAPSSGQAKDGTFGVRRQSNQSEGEGGKHLGAWATDSSGAPTGGXXXXXQASFPSHPSPLAGAGEERTSETRWRKQANGASANDAAAASSSRRTGRSLSARDLRAAAXLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPMLSDFDTLTLGGSERPVTPVGEESQTTYQLPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRRDNEGSPTHFGVAERGXXXXXXXXXXXXXXXXXXXXXXXXRVTYGWAGAAGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-PSATGPSSPRLIKGGFGPANPLSWTAKDNASGAGGNTSF 1428
            NLRLEVKGHGD DDGSEWGNYYSWQGPDSRAPSSGQAKDGTFGVRRQSNQSE EGGKHLGAWATDSSGAPTGG     QASFPSHPSPLAGAGEERTSE RWRKQANGASANDAAA SSSRRTGRSLSARDLRAAA LD                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    PMLSDFDTLTLGGSERPVTPVGEESQT YQ+P A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                   XXXXXXXXXXXXXXXXXXXXXXXRVTYGWAGA   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX P ATG SSPRLIKGGFGPANPLSWTAKDNASGAGGNTSF
Sbjct: 1047 NLRLEVKGHGDGDDGSEWGNYYSWQGPDSRAPSSGQAKDGTFGVRRQSNQSEEEGGKHLGAWATDSSGAPTGGGGAGGQASFPSHPSPLAGAGEERTSEARWRKQANGASANDAAA-SSSRRTGRSLSARDLRAAAALDVGSGGGCDTASPSRMPAEKGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAVVPMLSDFDTLTLGGSERPVTPVGEESQTAYQIPVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXRVTYGWAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLATGSSSPRLIKGGFGPANPLSWTAKDNASGAGGNTSF 1509
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10199.219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLR2_ECTSI2.440e-8087.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEL9_9PHAE6.260e-8086.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10199contigEcto-sp13_S_contig10199:2257..4399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score290.8
Seed ortholog evalue1.2e-75
Seed eggNOG ortholog2880.D8LLR2
Preferred nameATMRK1
Model size1487
KEGG koko:K04424,ko:K16799
KEGG Pathwayko04010,ko04341,map04010,map04341
KEGG ModuleM00678
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004485,GO:0004672,GO:0004674,GO:0004712,GO:0004713,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0009791,GO:0009987,GO:0010154,GO:0010344,GO:0016020,GO:0016301,GO:0016310,GO:0016421,GO:0016740,GO:0016772,GO:0016773,GO:0016874,GO:0016885,GO:0018108,GO:0018193,GO:0018212,GO:0019538,GO:0022414,GO:0023052,GO:0031974,GO:0032501,GO:0032502,GO:0035556,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0061458,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0071944,GO:0140096,GO:1901564
Exons2
EggNOG free text desc.clathrin-coated pit assembly
EggNOG OGsCOG0515@1,KOG0192@2759,KOG1989@1,KOG1989@2759
EC2.7.11.25
Cds size1485
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462514.1013095-CDS-Ecto-sp13_S_contig10199:2256..36931681462514.1013095-CDS-Ecto-sp13_S_contig10199:2256..3693Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10199 2257..3693 -
1681462514.1127508-CDS-Ecto-sp13_S_contig10199:4351..43991681462514.1127508-CDS-Ecto-sp13_S_contig10199:4351..4399Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10199 4352..4399 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10199.219.1prot_Ecto-sp13_S_contig10199.219.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10199 2257..4399 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10199.219.1

>prot_Ecto-sp13_S_contig10199.219.1 ID=prot_Ecto-sp13_S_contig10199.219.1|Name=mRNA_Ecto-sp13_S_contig10199.219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=495bp
NGGWAEEGGAKNLRLEVKGHGDADDGSEWGNYYSWQGPDSRAPSSGQAKD
GTFGVRRQSNQSEGEGGKHLGAWATDSSGAPTGGGGGGGQASFPSHPSPL
AGAGEERTSETRWRKQANGASANDAAAASSSRRTGRSLSARDLRAAAALD
GSGGGGGHTASPSRMPPEKGTGAGGGRRKGEVAGRRKSSNEGNGDNAHQA
ASTAASAAAAAPMLSDFDTLTLGGSERPVTPVGEESQTTYQLPAAAAAAA
AAAGAGESGSKKQLALRRERTHPPPLPPRRDNEGSPTHFGVAERGGSQQQ
DPSGAAAAGSGVAPPPLPPRVTYGWAGAAGVVATSQQVDPTAGAAAATGG
GGGGAGRSNASSPPPPDPPSLAGVRGASSASAAVTAGASVGGGGVVRANS
GSVRRKEKGDGPSSPRKRATERGGGDAPSSLLVQQQQPSATGPSSPRLIK
GGFGPANPLSWTAKDNASGAGGNTSFSHTNTENKRPAPGVGGGAG
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mRNA from alignment at Ecto-sp13_S_contig10199:2257..4399-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10199.219.1 ID=mRNA_Ecto-sp13_S_contig10199.219.1|Name=mRNA_Ecto-sp13_S_contig10199.219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2143bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10199:2257..4399- (Ectocarpus species13 EcNAP12_S_4_19m)
AACGGCGGCTGGGCAGAAGAGGGAGGGGCGAAGAACCTTCGCCTTGAGGT
GGGTGTGGGTGATGGTGTGATGTTTATTGTTCTTGTTCTCGAGGATGGCG
CGCTACAAAAACAGAGGCAGCGATGTCGGGGTATACTCGTTGGGTCGCGT
GCTGCACCCTCAAACGTATGCATATCTCGCAAAGTTGCTTGCGTGGTACT
TCTAGAAGATGCGGTAGGTCACGCAAGACTCCGCAACCCCTAGGGCGATC
TTCAAAGCTCGGTTACTGCACAGCAGGGACAGGGCCGGAAATCGAGGCGT
TGGAATTTTTGTCTTCGAGAGGTTTCCGAAAACTTGTCATTTGGCGTCTT
CTTCTTCGCCGTGGAGTAATCGAGCTTGGACGTTCGTTCAGTCCAGGGGA
TGCGGTATCTTGTGCGACTTACGGTGTACATGTGCGACCCCGGTACACGG
GCACCGGTAACGCTGCACAGCGCCGGGTATTGTTGCTGCTGCTGTTGCCA
CGCATTGAGTTGTTCTCACGAACGTCTTGTGCAACTCTCGGGATCGGTCG
CCTCGGCGTTCGTAGCCTGGTCGGTACCTTAGGGTCGCGGGTTCGAAGTA
TCTCCAACCACAAATCTAGACAGAGAAAAGTCTAGTGCGTTATTTTGTGA
AGCCGCCCGGTTAAGCGCGGTGGATGCTAACGGTCAAGACACCCACGTGC
ACGCAGGTCAAAGGCCACGGTGATGCAGACGACGGGAGCGAGTGGGGCAA
CTACTACAGCTGGCAGGGTCCCGACAGCCGCGCCCCGTCCTCCGGCCAGG
CGAAGGACGGCACCTTCGGCGTGCGCCGCCAGAGCAACCAATCGGAAGGG
GAGGGGGGCAAGCACCTCGGAGCGTGGGCAACCGACTCTTCCGGTGCTCC
CACAGGCGGCGGGGGAGGCGGAGGGCAAGCGTCGTTTCCCAGCCACCCCA
GCCCCTTGGCCGGAGCGGGCGAGGAGAGGACGAGCGAGACTCGCTGGAGG
AAGCAGGCCAACGGCGCGAGTGCTAACGACGCCGCCGCCGCTTCCTCCTC
CAGGCGTACCGGTAGGTCCTTGTCAGCCAGGGACTTGCGGGCTGCTGCTG
CCTTGGACGGCAGCGGCGGCGGAGGGGGTCACACCGCGTCGCCCTCGAGA
ATGCCGCCAGAGAAGGGCACGGGGGCGGGAGGGGGCAGGAGGAAGGGTGA
GGTGGCGGGGAGGCGAAAAAGCTCCAACGAAGGCAACGGTGACAACGCGC
ACCAGGCGGCGTCTACGGCGGCGTCAGCGGCGGCGGCGGCCCCGATGCTC
AGCGACTTCGACACGCTCACGCTGGGAGGCAGCGAACGGCCCGTCACCCC
CGTCGGCGAAGAAAGCCAGACCACCTACCAACTACCGGCAGCGGCGGCGG
CGGCGGCGGCGGCAGCCGGCGCAGGCGAGAGCGGCAGCAAGAAACAGTTG
GCGCTTCGGAGAGAGAGGACGCACCCGCCACCCCTGCCGCCGCGCCGGGA
TAACGAGGGTAGCCCTACCCACTTCGGGGTTGCCGAGAGGGGCGGTTCGC
AGCAGCAGGATCCGTCGGGAGCCGCGGCGGCGGGGTCGGGCGTGGCGCCC
CCGCCGCTGCCTCCCAGGGTCACCTACGGGTGGGCCGGCGCGGCAGGGGT
GGTTGCTACCTCACAACAGGTCGACCCGACTGCCGGAGCCGCTGCTGCGA
CCGGAGGCGGCGGTGGCGGGGCGGGGCGATCAAACGCTTCTTCGCCGCCT
CCTCCTGACCCTCCGTCGCTAGCAGGGGTCCGCGGCGCTTCCTCTGCTAG
CGCGGCGGTGACGGCAGGAGCATCCGTCGGGGGGGGCGGAGTGGTGAGGG
CCAACAGCGGCTCGGTCAGGAGGAAAGAGAAGGGGGACGGGCCGTCTTCC
CCGCGAAAGAGAGCAACAGAACGGGGCGGCGGGGACGCGCCGTCGTCCTT
GCTGGTGCAGCAGCAGCAGCCTTCGGCGACGGGGCCCTCTTCGCCGAGGC
TGATCAAGGGCGGCTTCGGCCCCGCCAACCCGCTGTCGTGGACGGCCAAG
GATAACGCCTCCGGCGCCGGAGGCAACACCTCCTTCTCGCACACCAACAC
AGAGAACAAACGGCCGGCTCCGGGTGTCGGGGGGGGAGCGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10199:2257..4399-

>mRNA_Ecto-sp13_S_contig10199.219.1 ID=mRNA_Ecto-sp13_S_contig10199.219.1|Name=mRNA_Ecto-sp13_S_contig10199.219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1485bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10199:2257..4399- (Ectocarpus species13 EcNAP12_S_4_19m)
AACGGCGGCTGGGCAGAAGAGGGAGGGGCGAAGAACCTTCGCCTTGAGGT
CAAAGGCCACGGTGATGCAGACGACGGGAGCGAGTGGGGCAACTACTACA
GCTGGCAGGGTCCCGACAGCCGCGCCCCGTCCTCCGGCCAGGCGAAGGAC
GGCACCTTCGGCGTGCGCCGCCAGAGCAACCAATCGGAAGGGGAGGGGGG
CAAGCACCTCGGAGCGTGGGCAACCGACTCTTCCGGTGCTCCCACAGGCG
GCGGGGGAGGCGGAGGGCAAGCGTCGTTTCCCAGCCACCCCAGCCCCTTG
GCCGGAGCGGGCGAGGAGAGGACGAGCGAGACTCGCTGGAGGAAGCAGGC
CAACGGCGCGAGTGCTAACGACGCCGCCGCCGCTTCCTCCTCCAGGCGTA
CCGGTAGGTCCTTGTCAGCCAGGGACTTGCGGGCTGCTGCTGCCTTGGAC
GGCAGCGGCGGCGGAGGGGGTCACACCGCGTCGCCCTCGAGAATGCCGCC
AGAGAAGGGCACGGGGGCGGGAGGGGGCAGGAGGAAGGGTGAGGTGGCGG
GGAGGCGAAAAAGCTCCAACGAAGGCAACGGTGACAACGCGCACCAGGCG
GCGTCTACGGCGGCGTCAGCGGCGGCGGCGGCCCCGATGCTCAGCGACTT
CGACACGCTCACGCTGGGAGGCAGCGAACGGCCCGTCACCCCCGTCGGCG
AAGAAAGCCAGACCACCTACCAACTACCGGCAGCGGCGGCGGCGGCGGCG
GCGGCAGCCGGCGCAGGCGAGAGCGGCAGCAAGAAACAGTTGGCGCTTCG
GAGAGAGAGGACGCACCCGCCACCCCTGCCGCCGCGCCGGGATAACGAGG
GTAGCCCTACCCACTTCGGGGTTGCCGAGAGGGGCGGTTCGCAGCAGCAG
GATCCGTCGGGAGCCGCGGCGGCGGGGTCGGGCGTGGCGCCCCCGCCGCT
GCCTCCCAGGGTCACCTACGGGTGGGCCGGCGCGGCAGGGGTGGTTGCTA
CCTCACAACAGGTCGACCCGACTGCCGGAGCCGCTGCTGCGACCGGAGGC
GGCGGTGGCGGGGCGGGGCGATCAAACGCTTCTTCGCCGCCTCCTCCTGA
CCCTCCGTCGCTAGCAGGGGTCCGCGGCGCTTCCTCTGCTAGCGCGGCGG
TGACGGCAGGAGCATCCGTCGGGGGGGGCGGAGTGGTGAGGGCCAACAGC
GGCTCGGTCAGGAGGAAAGAGAAGGGGGACGGGCCGTCTTCCCCGCGAAA
GAGAGCAACAGAACGGGGCGGCGGGGACGCGCCGTCGTCCTTGCTGGTGC
AGCAGCAGCAGCCTTCGGCGACGGGGCCCTCTTCGCCGAGGCTGATCAAG
GGCGGCTTCGGCCCCGCCAACCCGCTGTCGTGGACGGCCAAGGATAACGC
CTCCGGCGCCGGAGGCAACACCTCCTTCTCGCACACCAACACAGAGAACA
AACGGCCGGCTCCGGGTGTCGGGGGGGGAGCGGGG
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