mRNA_Ecto-sp13_S_contig12630.2181.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12630.2181.1 vs. uniprot
Match: D8LBW3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBW3_ECTSI) HSP 1 Score: 352 bits (903), Expect = 9.370e-120 Identity = 174/181 (96.13%), Postives = 180/181 (99.45%), Query Frame = 1
Query: 1 VVCLSSVMHHSGGTNWESAVMGHPKRRGATYADSKLAMVIFAKELKKRFAAAGSSATAVAVNPGAVRSDIWRNIPKLVMPVFDLFMRFLFLTSEQGSYTSVRAAALPLETLSGSGYYQPYWMPFERPLPFEVFGPFIGCAPGRPKLVKDEPAATSALWTTCERVIEAAGAARGDAPGASRG 543
VVCLSSVMHHSGGT+WESAVMGHPKRRG+TYADSKLAMVIFAKELKKRFAAAGSSATAVAVNPGAVRSDIWRN+PKLVMPVFDLFMRFLFLTSEQGSYTSVRAAALPLET+SGSGYYQPYWMPF+RPLPFEVFGPF+GCAPG PKLVKDEPAATSALWTTCERVIEAAGAARGDAPGASRG
Sbjct: 194 VVCLSSVMHHSGGTDWESAVMGHPKRRGSTYADSKLAMVIFAKELKKRFAAAGSSATAVAVNPGAVRSDIWRNVPKLVMPVFDLFMRFLFLTSEQGSYTSVRAAALPLETVSGSGYYQPYWMPFKRPLPFEVFGPFVGCAPGLPKLVKDEPAATSALWTTCERVIEAAGAARGDAPGASRG 374
BLAST of mRNA_Ecto-sp13_S_contig12630.2181.1 vs. uniprot
Match: A0A835Z5W3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5W3_9STRA) HSP 1 Score: 152 bits (384), Expect = 1.770e-41 Identity = 84/172 (48.84%), Postives = 110/172 (63.95%), Query Frame = 1
Query: 1 VVCLSSVMHHSGGTNWESAVMGHPKRRG-ATYADSKLAMVIFAKELKKRFAAAGSSATAVAVNPGAVRSDIWRNIPKLVMPVFDLFMRFLFLTSEQGSYTSVRAAALPLETLSGSG---YYQPYWMPFERPLPFEVFGPFIGCAPGRPKLVKDEPAATSALWTTCERVIEAA 504
VV L+S+MHH G +WE A G+ +G ++Y SKLAMV+F++EL++RF AG +AT+ AVNPGAVRSDIWR +P V+D MR FL EQG++TSV AAA PL+ L G Y+QPY +P PFEV GPF+G P + D + LW C R++EAA
Sbjct: 189 VVNLASLMHHYGRVDWERACWGNDDWKGFSSYQASKLAMVLFSQELRRRFRRAGGTATSFAVNPGAVRSDIWRFVPPPFKYVYDAVMRAGFLNVEQGAFTSVYAAAAPLDALGGPDGPLYWQPYLLPLGLAHPFEVAGPFVGATAAAPAVPPDHEREGARLWEECTRMVEAA 360
BLAST of mRNA_Ecto-sp13_S_contig12630.2181.1 vs. uniprot
Match: A0A835ZF30_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF30_9STRA) HSP 1 Score: 126 bits (317), Expect = 1.240e-31 Identity = 80/187 (42.78%), Postives = 103/187 (55.08%), Query Frame = 1
Query: 1 VVCLSSVMHHSGGTNWESAVMGHPKRRGAT---------YADSKLAMVIFAKELKKRFAAAGSSATAVAVNPGAVRSDIWRNIP-KLVMPVFDLFMRFLFLTSEQGSYTSVRAAALPLETLSGSG---------YYQPYWMPFERPLPFEVFGPFIGCAPGRPKLVKDEPAATSALWTTCERVIEAA 504
V+ +SS +HH G T WE A MG RRG YADSKLAM++F EL++RFAA SA A+ V+PG V SDIWR +P L+MP+ + M +FLT +Q + SV AAA PL L G Y QPYW P ++ PF+VFGP+ G P L + LW +I+AA
Sbjct: 185 VINVSSPLHHYGTTKWEDAAMG---RRGEPDFMNVLFHCYADSKLAMMLFTNELRRRFAADNCSAVAICVSPGNVNSDIWRTVPIPLLMPM-KVVMAAVFLTPDQACHPSVMAAAAPLNELKGFMAKDAEELPLYLQPYWNPLKQAHPFDVFGPYAGTDVSIPSLPPNYEEEGKRLWFVSSELIKAA 367
BLAST of mRNA_Ecto-sp13_S_contig12630.2181.1 vs. uniprot
Match: A0A7S3Y5K9_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5K9_HETAK) HSP 1 Score: 103 bits (258), Expect = 3.260e-23 Identity = 64/166 (38.55%), Postives = 94/166 (56.63%), Query Frame = 1
Query: 1 VVCLSSVMHHSGGT--NWESAVMGHPKRRGATYADSKLAMVIFAKELKKRFAAAGSSATAVAVNPGAVRSDIWRNIPKLVMPVFDLFMRFLFLTSEQGSYTSVRAAALPLETLSGSGYYQPYWMPFERPLPFEVFGPFIGCAPGRPKLVKDEPAATSALWTTCERV 492
++ +SSV+H + ++E++ G K Y +SKLAMV+F KEL++R G+ +A AV+PGAVRS+IWR+ L + M LFL ++QG+ S+ AA P L Y+ PY PLPFE+ GP+ G P RP L +EP ++ LW R+
Sbjct: 183 IINVSSVVHRFSPSKPDFEASANGMDKMHN--YQNSKLAMVLFTKELRRRLK--GTQVSAYAVSPGAVRSEIWRSWRGLPRAALNAAMAALFLDTDQGAAPSIHCAAAPPAALGTHLYHCPYLTAPACPLPFEMLGPYAGALPSRPSLPDNEPEISADLWKLSCRI 344
BLAST of mRNA_Ecto-sp13_S_contig12630.2181.1 vs. uniprot
Match: A0A7S0NPL6_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NPL6_9EUKA) HSP 1 Score: 98.6 bits (244), Expect = 3.740e-22 Identity = 73/169 (43.20%), Postives = 88/169 (52.07%), Query Frame = 1
Query: 1 VVCLSSVMHHSGGTNWESAVMGHPKRRGATYADSKLAMVIFAKELKKRFAAAGSSATAVAVNPGAVRSDIW---RNIPKLVMPVFDLFMRFLFLTSEQGSYTSVRAAALPLETLSG-SGYYQPYWMPFERPLPFEVFGPFIGCAPGRPKLVKDEPAATSALWTTCERVI 495
VVCLSSV H SG T+W + R +TY+ SKLAM FA EL +R+ T +AVNPGAV SDIW + P L V R +FLTSEQG+ TSV AA P +G SGY PYW E+ GPF G P RP + A AL+ R +
Sbjct: 54 VVCLSSVTHRSGVTDWAAYRRFVAGR--STYSTSKLAMAGFAAELTRRYQDR-YGITGIAVNPGAVCSDIWFRGQQSPWLAA-VMRFVFRLVFLTSEQGAVTSVSAATDPRWAEAGASGYLAPYWTAGPLAPLLEIHGPFAGAQPCRPLAAVSDVKACRALFEETRRAL 218
BLAST of mRNA_Ecto-sp13_S_contig12630.2181.1 vs. uniprot
Match: A0A835YTY6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTY6_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 2.040e-21 Identity = 64/156 (41.03%), Postives = 86/156 (55.13%), Query Frame = 1
Query: 1 VVCLSSVMHHSGGTN-WESAVMGHPKRRGAT---------YADSKLAMVIFAKELKKRFAAAGSSATAVAVNPGAVRSDIWRNIPKLVMPVFDLFMRFLFLTSEQGSYTSVRAAALPLETLSG-----SGYYQPYW--MPFERPLPFEVFGPFIGC 417
+V ++SV H G + WE A G RRG T YADSKLA ++ A +L++RF A +A A AV+PG R+D+WR +P + FD FMR FL+ E G YTSV AA PL+ L + + QPYW +P+ + GPF GC
Sbjct: 183 IVNVASVFHQYGDPDKWEEAATG---RRGDTGPFDVLTHVYADSKLANLMHALDLRRRFTADRCNAVAFAVHPGNCRTDLWRYVPNNLHNAFDKFMRIFFLSPELGCYTSVSAAVAPLDRLREPDGNLARFLQPYWCPVPYVKDRAAHQIGPFAGC 335
BLAST of mRNA_Ecto-sp13_S_contig12630.2181.1 vs. uniprot
Match: A0A7S3NMR2_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NMR2_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 5.880e-20 Identity = 66/174 (37.93%), Postives = 92/174 (52.87%), Query Frame = 1
Query: 1 VVCLSSVMHHSGGT-----NWESAVMGHPKRRGATYADSKLAMVIFAKELKK-RF---AAAGSSATAVAVNPGAVRSDIWRNIPKLVMPVFDLFMRFLFLTSEQGSYTSVRAAALPLETLSGSGYYQPYWMP-FERP--LPFEVFGPFIGCAPGRPKLVKDEPAATSALWTTCE 486
++CLSSVMHH + E+ + P A Y++SKLAM + A+ + + RF ++ AVAVNPGAV S+IWR+ + P+ L M FLT +QG+ T+V AA P + + Y PY+ P F+ P FE GPF G P ++ E S LW TCE
Sbjct: 175 IICLSSVMHHFADPTKLFFDTENLLPMLP----ADYSESKLAMNLLARAISEARFFPHSSTNKPIYAVAVNPGAVSSEIWRHTWPPIKPLLQLIMTLFFLTPDQGAATTVAAAVQPTSIVPSNTYLTPYYQPSFKLPGRSGFEFVGPFAGARPAFCRIPSCEHEIASQLWDTCE 344
BLAST of mRNA_Ecto-sp13_S_contig12630.2181.1 vs. uniprot
Match: A0A7S0KYI1_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KYI1_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 1.230e-19 Identity = 71/189 (37.57%), Postives = 97/189 (51.32%), Query Frame = 1
Query: 1 VVCLSSVMHH--------------SGGTNW--ESAVMGHPKRRGATYADSKLAMVIFAKELKKRFAAAGSSATAVAVNPGAVRSDIWRNIPKLVMPVFDLFMRFLFLTSEQGSYTSVRAAA--LPLETLSGSGYYQPYWMPFER-----PLP-FEVFGPFIGCAPGRPKLVKDE-PAATSALWTTCERV 492
V+ LSSV HH S G +W + A G + G +Y SKLA ++F+ EL KRF + G + +AVNPG+V SDIWR P+ ++P+F R ++LTS+QGS TSV AA P Y QPY F P P FE+ GP++G P+L D P + ALW + +
Sbjct: 153 VINLSSVTHHFVEEGIGEKEDERGSLGRSWWTKQATYG---QSGISYRTSKLASILFSIELNKRFGSKGLQS--IAVNPGSVNSDIWRGYPRWIIPIF----RMIYLTSKQGSSTSVAAAVGEFPKAQKDKVVYLQPYRQLFSSKAQKPPFPAFEMLGPYVGYEITTPRLPSDGGPKSAQALWEVSQNL 332
BLAST of mRNA_Ecto-sp13_S_contig12630.2181.1 vs. uniprot
Match: A0A6T8PC20_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8PC20_HEMAN) HSP 1 Score: 94.4 bits (233), Expect = 1.470e-19 Identity = 67/184 (36.41%), Postives = 94/184 (51.09%), Query Frame = 1
Query: 1 VVCLSSVMHHSGGTNWESAVMGHPKRRGAT---YADSKLAMVIFAKELKKRFAAAGSSATAVAVNPGAVRSDIWRNIPKLVM------PVFDLFMRFLFLTSEQGSYTSVRAAALPLETLSGSGYYQPYWMPFERPL----------PFEVFGPFIGCAPGRPKLVKDEPAATSALWTTCERVI 495
+VCL SVMHH SA++ RG+ Y DSKLAM+++A++ + G S +AVAVNPG V SDIWR + L + PV+ F++ L L+ ++GS SV AA + L G Y+ PY++P L P E+ GP G P +L KDE + LW V+
Sbjct: 200 LVCLGSVMHHFA---TGSAILEQAGGRGSPVMGYHDSKLAMILYARQFNRVMK--GRSVSAVAVNPGWVASDIWRQVADLPVVGPFAAPVYRFFLKGLALSPKEGSMPSVFAAT---QDLRGHDYFSPYFVPQPALLTRLLGSGWWFPMELMGPMAGVRPLAARLPKDEERVSGELWRITSEVL 375
BLAST of mRNA_Ecto-sp13_S_contig12630.2181.1 vs. uniprot
Match: A0A0G4HA93_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HA93_9ALVE) HSP 1 Score: 92.8 bits (229), Expect = 3.250e-19 Identity = 68/177 (38.42%), Postives = 89/177 (50.28%), Query Frame = 1
Query: 1 VVCLSSVMHHSGGTNWESAVMGHPKRRGATYADSKLAMVIFAKELKKRFAAAGSSATAVAVNPGAVRSDIWRNIPKLVMPVFDLFMRFLFLTSEQGSYTSVRAAALPLETLSGSGYYQPYWMPFERPLP----------FEVFGPFIGC--APGRPKLVKDEPAATSALWTTCERVI 495
VVCL SVM+ G T+W + +R +Y SKLAM++ AKEL +R+ G + TAV VNPG V SDIWR P LV + + + LT+ QGS SV AA + G Y+ PYW+P P FE GPF G P K+ +E +LW+ E I
Sbjct: 167 VVCLGSVMYRFGSTDWSATARAKGSQR--SYGTSKLAMLVLAKELHRRY---GETVTAVGVNPGFVNSDIWRFYPWLVQKL----IAAVTLTTAQGSVCSVHAATS--SDVVGGEYFSPYWVPDPAWDPCGVSAWVGTVFEAIGPFRGALLTPLLAKVCSEEVG--ESLWSISEHQI 330 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12630.2181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12630.2181.1 >prot_Ecto-sp13_S_contig12630.2181.1 ID=prot_Ecto-sp13_S_contig12630.2181.1|Name=mRNA_Ecto-sp13_S_contig12630.2181.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=175bp MHHSGGTNWESAVMGHPKRRGATYADSKLAMVIFAKELKKRFAAAGSSATback to top mRNA from alignment at Ecto-sp13_S_contig12630:2988..4846- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12630.2181.1 ID=mRNA_Ecto-sp13_S_contig12630.2181.1|Name=mRNA_Ecto-sp13_S_contig12630.2181.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1859bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12630:2988..4846- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12630:2988..4846- >mRNA_Ecto-sp13_S_contig12630.2181.1 ID=mRNA_Ecto-sp13_S_contig12630.2181.1|Name=mRNA_Ecto-sp13_S_contig12630.2181.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=525bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12630:2988..4846- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |