mRNA_Ecto-sp13_S_contig12626.2174.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12626.2174.1
Unique NamemRNA_Ecto-sp13_S_contig12626.2174.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12626.2174.1 vs. uniprot
Match: D7G3K7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3K7_ECTSI)

HSP 1 Score: 396 bits (1017), Expect = 2.390e-132
Identity = 252/298 (84.56%), Postives = 259/298 (86.91%), Query Frame = 1 
Query:   10 RSRAGTLSSLIHPRLSTVSQNSVKSENSMYDYQGLIHGRGSAVRMAMNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKIGGKSGRPQSIDLRRLSCAGNDAMGLESAHLETPQQRWVMPRRRYRHSHDASGGGNPDVSSSAVGAADGVGMRRSNGGGKRARSRAILKTPGFLKSPTLGGLRAGVGKAAKASKSTSFAVPVSNAGGAGAGARTPADSVDSSCASTVRAAEEASAVETPLFVPPALASSAVLCGLPAGLELSPSALVVASGLPSEE 903
            RSRAGTLSSLIHPRLSTVSQNSVKSENS+YDYQGLIHGRGSAVRMAMNN              XX      XXXXXXXXXXXXXXXXXXXXXXX      S+ GGKSGRPQSIDLR  S AGNDAMGLESAHLETPQQRWVMPRRR+RHSHDASGGGNPDV SSAV AADGVGMR S  GGKRARSRAILKTPGFLKSPTLGGLRAGVGKAA+A+KSTSFAVPVSNAGGAGAG RTPADSVDSSCASTVRAAEEASA +TPLFVPPALASSAVLCGLPA L LSP+ALVVASGLPSEE
Sbjct:  272 RSRAGTLSSLIHPRLSTVSQNSVKSENSVYDYQGLIHGRGSAVRMAMNNNSNASGVGGKPSRPXXVSLGGSXXXXXXXXXXXXXXXXXXXXXXX------SRAGGKSGRPQSIDLRIASSAGNDAMGLESAHLETPQQRWVMPRRRHRHSHDASGGGNPDVGSSAVVAADGVGMRGSKAGGKRARSRAILKTPGFLKSPTLGGLRAGVGKAARATKSTSFAVPVSNAGGAGAGTRTPADSVDSSCASTVRAAEEASAADTPLFVPPALASSAVLCGLPASLVLSPTALVVASGLPSEE 563
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12626.2174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3K7_ECTSI2.390e-13284.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12626contigEcto-sp13_S_contig12626:4081..4986 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size906
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionC2 domain
Ec32 orthologEc-19_005030.1
Cds size906
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462674.05309-CDS-Ecto-sp13_S_contig12626:4080..49861681462674.05309-CDS-Ecto-sp13_S_contig12626:4080..4986Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12626 4081..4986 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12626.2174.1prot_Ecto-sp13_S_contig12626.2174.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12626 4081..4986 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12626.2174.1

>prot_Ecto-sp13_S_contig12626.2174.1 ID=prot_Ecto-sp13_S_contig12626.2174.1|Name=mRNA_Ecto-sp13_S_contig12626.2174.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=302bp
PQPRSRAGTLSSLIHPRLSTVSQNSVKSENSMYDYQGLIHGRGSAVRMAM
NNNSNASGGGGKSSRPRPVSLGGSLGLPLSALGLGVGVGGGGGGGGGGGG
GGGSKIGGKSGRPQSIDLRRLSCAGNDAMGLESAHLETPQQRWVMPRRRY
RHSHDASGGGNPDVSSSAVGAADGVGMRRSNGGGKRARSRAILKTPGFLK
SPTLGGLRAGVGKAAKASKSTSFAVPVSNAGGAGAGARTPADSVDSSCAS
TVRAAEEASAVETPLFVPPALASSAVLCGLPAGLELSPSALVVASGLPSE
E*
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mRNA from alignment at Ecto-sp13_S_contig12626:4081..4986-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12626.2174.1 ID=mRNA_Ecto-sp13_S_contig12626.2174.1|Name=mRNA_Ecto-sp13_S_contig12626.2174.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=906bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12626:4081..4986- (Ectocarpus species13 EcNAP12_S_4_19m)
CCACAGCCGCGGTCAAGAGCGGGGACGCTGTCGAGCCTGATCCACCCGAG
GCTCAGCACCGTTTCACAGAACAGCGTCAAGAGCGAGAACAGCATGTACG
ACTACCAGGGCTTGATACACGGCAGAGGGAGTGCTGTTCGGATGGCCATG
AACAACAACAGTAACGCCTCTGGAGGGGGGGGTAAATCTTCCCGGCCGCG
CCCGGTTTCGCTCGGCGGGAGCTTGGGCTTGCCGCTTAGCGCGCTAGGTT
TAGGGGTAGGGGTAGGCGGTGGCGGCGGCGGTGGTGGCGGCGGCGGCGGC
GGAGGCGGGAGCAAAATCGGCGGAAAGTCGGGGCGGCCCCAATCGATCGA
TTTGCGCAGATTGTCTTGCGCGGGCAACGACGCCATGGGGTTGGAGTCGG
CGCACCTGGAGACCCCGCAGCAGCGGTGGGTCATGCCCCGACGACGGTAC
AGACACAGCCACGACGCCTCCGGCGGGGGAAATCCGGACGTCAGCAGCTC
GGCGGTCGGCGCCGCCGACGGGGTTGGAATGAGACGCTCCAACGGCGGCG
GGAAGCGCGCGCGGTCACGGGCAATCTTAAAAACCCCGGGTTTCCTAAAG
AGTCCTACGCTGGGCGGGCTGCGGGCGGGGGTCGGCAAGGCCGCGAAGGC
ATCGAAGTCGACGTCCTTCGCTGTGCCGGTGTCGAACGCTGGTGGGGCCG
GAGCGGGGGCTAGGACCCCGGCGGACTCGGTGGATTCGTCGTGCGCGAGC
ACGGTGCGGGCGGCGGAGGAGGCTTCGGCGGTGGAGACCCCGCTCTTTGT
ACCGCCAGCCTTGGCGTCTTCGGCTGTGCTGTGCGGGCTACCGGCGGGCC
TTGAGCTGTCTCCGTCGGCGCTCGTGGTTGCGTCAGGATTGCCCTCCGAG
GAGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12626:4081..4986-

>mRNA_Ecto-sp13_S_contig12626.2174.1 ID=mRNA_Ecto-sp13_S_contig12626.2174.1|Name=mRNA_Ecto-sp13_S_contig12626.2174.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=906bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12626:4081..4986- (Ectocarpus species13 EcNAP12_S_4_19m)
CCACAGCCGCGGTCAAGAGCGGGGACGCTGTCGAGCCTGATCCACCCGAG
GCTCAGCACCGTTTCACAGAACAGCGTCAAGAGCGAGAACAGCATGTACG
ACTACCAGGGCTTGATACACGGCAGAGGGAGTGCTGTTCGGATGGCCATG
AACAACAACAGTAACGCCTCTGGAGGGGGGGGTAAATCTTCCCGGCCGCG
CCCGGTTTCGCTCGGCGGGAGCTTGGGCTTGCCGCTTAGCGCGCTAGGTT
TAGGGGTAGGGGTAGGCGGTGGCGGCGGCGGTGGTGGCGGCGGCGGCGGC
GGAGGCGGGAGCAAAATCGGCGGAAAGTCGGGGCGGCCCCAATCGATCGA
TTTGCGCAGATTGTCTTGCGCGGGCAACGACGCCATGGGGTTGGAGTCGG
CGCACCTGGAGACCCCGCAGCAGCGGTGGGTCATGCCCCGACGACGGTAC
AGACACAGCCACGACGCCTCCGGCGGGGGAAATCCGGACGTCAGCAGCTC
GGCGGTCGGCGCCGCCGACGGGGTTGGAATGAGACGCTCCAACGGCGGCG
GGAAGCGCGCGCGGTCACGGGCAATCTTAAAAACCCCGGGTTTCCTAAAG
AGTCCTACGCTGGGCGGGCTGCGGGCGGGGGTCGGCAAGGCCGCGAAGGC
ATCGAAGTCGACGTCCTTCGCTGTGCCGGTGTCGAACGCTGGTGGGGCCG
GAGCGGGGGCTAGGACCCCGGCGGACTCGGTGGATTCGTCGTGCGCGAGC
ACGGTGCGGGCGGCGGAGGAGGCTTCGGCGGTGGAGACCCCGCTCTTTGT
ACCGCCAGCCTTGGCGTCTTCGGCTGTGCTGTGCGGGCTACCGGCGGGCC
TTGAGCTGTCTCCGTCGGCGCTCGTGGTTGCGTCAGGATTGCCCTCCGAG
GAGTAA
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