mRNA_Ecto-sp13_S_contig9985.21631.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9985.21631.1
Unique NamemRNA_Ecto-sp13_S_contig9985.21631.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9985.21631.1 vs. uniprot
Match: A0A6H5K0V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V8_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.100e-12
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 3 
Query:   81 RCAGMEWMRNVIFGEGNERETSSPVRIITRHFT 179
            RCAG++WMRNVIFGEGNE ETSSPVRIITR+FT
Sbjct:   40 RCAGIDWMRNVIFGEGNEGETSSPVRIITRYFT 72
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BLAST of mRNA_Ecto-sp13_S_contig9985.21631.1 vs. uniprot
Match: A0A6H5L213_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L213_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 3.410e-11
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 3 
Query:   93 MEWMRNVIFGEGNERETSSPVRIITRHFT 179
            MEWMRNVIFGEGNE ETSSPVRIITRHFT
Sbjct:    1 MEWMRNVIFGEGNEGETSSPVRIITRHFT 29
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BLAST of mRNA_Ecto-sp13_S_contig9985.21631.1 vs. uniprot
Match: A0A6H5L368_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L368_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.230e-10
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 3 
Query:   78 ERCAGMEWMRNVIFGEGNERETSSPVRIITRHFT 179
            +R AGM+ MRN+IFGEGNE ETSSPVRIITRHFT
Sbjct:   30 QRYAGMKLMRNIIFGEGNEGETSSPVRIITRHFT 63
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9985.21631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K0V8_9PHAE2.100e-1287.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L213_9PHAE3.410e-1196.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L368_9PHAE2.230e-1082.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9985contigEcto-sp13_S_contig9985:4851..6008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size183
Hectar predicted targeting categoryother localisation
Exons2
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464257.884837-CDS-Ecto-sp13_S_contig9985:4850..49301681464257.884837-CDS-Ecto-sp13_S_contig9985:4850..4930Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9985 4851..4930 +
1681464257.89526-CDS-Ecto-sp13_S_contig9985:5905..60081681464257.89526-CDS-Ecto-sp13_S_contig9985:5905..6008Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9985 5906..6008 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9985.21631.1prot_Ecto-sp13_S_contig9985.21631.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9985 4851..6008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9985.21631.1

>prot_Ecto-sp13_S_contig9985.21631.1 ID=prot_Ecto-sp13_S_contig9985.21631.1|Name=mRNA_Ecto-sp13_S_contig9985.21631.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
FITPPRDDRLRVKLAYSPGVPTPSQGRGAPGWNGCETSFSARATNEKPRH
QSGLLRGILR*
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mRNA from alignment at Ecto-sp13_S_contig9985:4851..6008+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9985.21631.1 ID=mRNA_Ecto-sp13_S_contig9985.21631.1|Name=mRNA_Ecto-sp13_S_contig9985.21631.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1158bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9985:4851..6008+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCATCACGCCCCCACGCGACGACCGCCTGAGGGTGAAGCTGGCCTATTC
GCCAGGCGTGCCAACACCATCACAAGGGAGGTTATGTGCCAGGGCAGAGC
GACTTCCATTCTCGGTGAGTCTTTTTGTCGTGACTTCGTGAGGGCAGCAA
CCCGGGGTATTTCCGAGCCGAATTCCGACCACCCTCCACGTCGCAGGCGG
GTCTGTGTCGCTGAAGAGGGGGAGTTTCCTGCCGTCGCGTGTGTCGATAG
TATATGTCTGAGGCTCACTTGGATAGAAATCCGTTTGGAAGATGGACTTG
TGTCCGCAGACTTCTCGCTAAAAATGCGGACCAAAAATCTCACCGTGGTA
GGAGCACCCTGCGAGGAAGGGTTCACCAGCAGGGGTTTTTAAAAACTAGA
AACTGCCCAGGCTCGTATCACACACCCCGACCACCAACCCGCGCCACGCC
AAAGCACGTCAGTTGCGAAAAAAAAACTTGTGGCTTCCACCATGCCGTCG
GGATAGTCTCAATGCTATGGGTATCTGAGACTAATCTATTTTTAGCACAA
AACCGACCTGTCCACTTTCGCCGCCGCTGCTACAACAAGTAGCAGTAGTA
GCGTCTGTTGTGTTTTGTATCGTTGGGACTGGTTCACAACACGTGCCTTG
GTGAGCATAGTACCTGCCGGCCCTCTTGTAGAAGTGGTTTCTCACTTAAG
TCCTCTGTTCCAAAACATCCATGGGGACTCGTGGTCACAAGGTACGGCAC
CCTCGACACCGCGAAGAAATCAAAAAACAAATATATGTAGGCTACATACC
ACTCAGAGTGGGAGACAACGGAAGAAAAAGAAGGTAAGGTGGCCCAGCCC
TGTCTGTTCCTGGTACGGTGGTTCCTGTTTACGGGTTGGCGGCGGCGTTT
CTCTTCACGATTAGTGCGGAAATAGTTATTTAGGCTCTCGTAAGGTGCAA
AAGCGCAGCAGACCCATGTCGTCTCCAACAAAAAATATATAGTCTTTCAT
CAAACAGCGGCTTATTTTTTTTGTTTGTCTCTCTTTCCCCTTGCCCCCCC
CCGAGAGGTGCGCCGGGATGGAATGGATGCGAAACGTCATTTTCGGCGAG
GGCAACGAACGAGAAACCTCGTCACCAGTCAGGATTATTACGAGGCATTT
TACGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9985:4851..6008+

>mRNA_Ecto-sp13_S_contig9985.21631.1 ID=mRNA_Ecto-sp13_S_contig9985.21631.1|Name=mRNA_Ecto-sp13_S_contig9985.21631.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9985:4851..6008+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCATCACGCCCCCACGCGACGACCGCCTGAGGGTGAAGCTGGCCTATTC
GCCAGGCGTGCCAACACCATCACAAGGGAGAGGTGCGCCGGGATGGAATG
GATGCGAAACGTCATTTTCGGCGAGGGCAACGAACGAGAAACCTCGTCAC
CAGTCAGGATTATTACGAGGCATTTTACGGTGA
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