mRNA_Ecto-sp13_S_contig9979.21627.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9979.21627.1
Unique NamemRNA_Ecto-sp13_S_contig9979.21627.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9979.21627.1 vs. uniprot
Match: D7FLN5_ECTSI (Protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLN5_ECTSI)

HSP 1 Score: 303 bits (775), Expect = 1.150e-93
Identity = 169/217 (77.88%), Postives = 182/217 (83.87%), Query Frame = 3 
Query:  246 PCPGRWRSPLDSCRPKDIRRGVGYGQTVMAAAQELAQHCQIPGVSEAAKAVSILERLVSGSRDYAVRGDAGVKQCRSIVIMLERAAK----GGDTNGEAA*ALMEDVHDAVCDLVELIRTYQSKNRLSKMLMSTLFKQRQDELNAVVDRAILRLHLGLQVQVGHDVSAVKEVMRRHK----EAISESLAEARSARRQRRIDQLEIPEDHMLITNKVL 872
            P PG   +P      +    GVGYGQ VMAAAQELAQHCQIPGVSEAA AVSIL RLVS SRDYAVRGDAGVK+CRSIV+MLE AAK    GGDTNGEAA ALMEDVHDAVCDLVELI+TYQSKNRLS +LMSTLFK+RQDEL+AVVDRAILRLHLGLQVQVGHDVS  KEV  RHK    EA+SE LAEARSARRQRR+DQL IPEDH+LIT++VL
Sbjct:   84 PVPGDGGAPSMVGARRTSDGGVGYGQAVMAAAQELAQHCQIPGVSEAATAVSILVRLVSDSRDYAVRGDAGVKRCRSIVMMLELAAKVLGKGGDTNGEAAQALMEDVHDAVCDLVELIKTYQSKNRLSNVLMSTLFKRRQDELDAVVDRAILRLHLGLQVQVGHDVSEAKEVTHRHKGSMEEAMSEPLAEARSARRQRRLDQLAIPEDHVLITDEVL 300
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BLAST of mRNA_Ecto-sp13_S_contig9979.21627.1 vs. uniprot
Match: A0A6H5KA37_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA37_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 1.880e-66
Identity = 131/194 (67.53%), Postives = 160/194 (82.47%), Query Frame = 3 
Query:  306 GVGYGQTVMAAAQELAQHCQIPGVSEAAKAVSILERLVSGSRDYAVRGDAGVKQCRSIVIMLERAAK----GGDTNGEAA*ALMEDVHDAVCDLVELIRTYQSKNRLSKMLMSTLFKQRQDELNAVVDRAILRLHLGLQVQVGHDVSAVKEVMRRHK-EAISESLAEARSARRQRRIDQLEIPEDHMLITNKVL 872
            GV YGQ V+AAA+ELA HCQIPGVSEAA  VSIL  LV+ SRD   RGD  VK+CRSIV+MLERAAK    GGDTN E   AL+E+VHDAV DLV+LI+TYQ+KN+LSK+LMSTLFK+RQ+EL+AVVD+AIL LHLGLQVQVG DV+   ++ +R   EA +ESLAEAR ARRQR++DQ+EIP+DH++IT ++L
Sbjct:  568 GVEYGQAVLAAAEELAHHCQIPGVSEAATVVSILVHLVTDSRDSMSRGDGAVKRCRSIVMMLERAAKVLGNGGDTNSEVERALIEEVHDAVSDLVDLIKTYQNKNKLSKVLMSTLFKRRQEELDAVVDKAILHLHLGLQVQVGQDVAEGLDLHKRSTAEAKAESLAEARRARRQRKLDQVEIPDDHVVITEEML 761
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BLAST of mRNA_Ecto-sp13_S_contig9979.21627.1 vs. uniprot
Match: D7FN19_ECTSI (Putative CTR1-like protein kinase/ leucine rich repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN19_ECTSI)

HSP 1 Score: 240 bits (613), Expect = 3.410e-66
Identity = 131/194 (67.53%), Postives = 160/194 (82.47%), Query Frame = 3 
Query:  306 GVGYGQTVMAAAQELAQHCQIPGVSEAAKAVSILERLVSGSRDYAVRGDAGVKQCRSIVIMLERAAK----GGDTNGEAA*ALMEDVHDAVCDLVELIRTYQSKNRLSKMLMSTLFKQRQDELNAVVDRAILRLHLGLQVQVGHDVSAVKEVMRRHK-EAISESLAEARSARRQRRIDQLEIPEDHMLITNKVL 872
            GV YGQ V+AAA+ELA HCQIPGVSEAA  VSIL  LV+ SRD   RGD  VK+CRSIV+MLERAAK    GGDTN E   AL+E+VHDAV DLV+LI+TYQ+KN+LSK+LMSTLFK+RQ+EL+AVVD+AIL LHLGLQVQVG DV+   ++ +R   EA +ESLAEAR ARRQR++DQ+EIP+DH++IT ++L
Sbjct:  711 GVEYGQAVLAAAEELAHHCQIPGVSEAATVVSILVHLVTDSRDSLSRGDLAVKRCRSIVMMLERAAKVLGKGGDTNSEVERALLEEVHDAVSDLVDLIKTYQNKNKLSKVLMSTLFKRRQEELDAVVDKAILHLHLGLQVQVGQDVAEGLDLHKRSTAEAKAESLAEARRARRQRKLDQVEIPDDHVVITEEML 904
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BLAST of mRNA_Ecto-sp13_S_contig9979.21627.1 vs. uniprot
Match: D7FLJ2_ECTSI (TKL family protein kinase protein kinase/ putative CTR1-like protein kinase/ leucine rich repeat pr n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ2_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 1.780e-61
Identity = 128/193 (66.32%), Postives = 154/193 (79.79%), Query Frame = 3 
Query:  306 GVGYGQTVMAAAQELAQHCQIPGVSEAAKAVSILERLVSGSRDYAVRGDAGVKQCRSIVIMLERAAK----GGDTNGEAA*ALMEDVHDAVCDLVELIRTYQSKNRLSKMLMSTLFKQRQDELNAVVDRAILRLHLGLQVQVGHDVSAVKEVMRRHKEAISESLAEARSARRQRRIDQLEIPEDHMLITNKVL 872
            GV YGQ V+ AA+ELA HCQIPGVSEAA AVSIL  LV  SRD  +    GVK+CRSIV+MLERAAK    GGDT+ E    LME+VHDAV DL ELI+TYQ+K++L+++L STLFK+RQDELNAV+DRAI  LHLGLQVQVGHDV+ +  V R   EA +ESLAEAR +RRQR++DQ+EIPEDH+ ITN++L
Sbjct:  713 GVAYGQAVLVAAEELAHHCQIPGVSEAATAVSILVHLVLDSRD--LTSGTGVKRCRSIVMMLERAAKVLGQGGDTSTEEERVLMEEVHDAVSDLNELIKTYQNKSKLAQLLTSTLFKRRQDELNAVMDRAIWGLHLGLQVQVGHDVAHL--VKRSTAEAQAESLAEARRSRRQRKLDQIEIPEDHVSITNEML 901
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BLAST of mRNA_Ecto-sp13_S_contig9979.21627.1 vs. uniprot
Match: D8LRE9_ECTSI (Transmembrane receptor kinase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE9_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 8.830e-59
Identity = 124/200 (62.00%), Postives = 154/200 (77.00%), Query Frame = 3 
Query:  300 RRG----VGYGQTVMAAAQELAQHCQIPGVSEAAKAVSILERLVSGSRDYAVRGDAGVKQCRSIVIMLERAAK----GGDTNGEAA*ALMEDVHDAVCDLVELIRTYQSKNRLSKMLMSTLFKQRQDELNAVVDRAILRLHLGLQVQVGHDVSAVKEVMRRH-KEAISESLAEARSARRQRRIDQLEIPEDHMLITNKVL 872
            RRG    VG GQ VM AAQELA  CQ+PGVSEA   VSIL  LV  SRD +  GD+ ++QCRSIV++L RA K    G +T G+ A  L++DVH+A+ DLVELI+TYQSKN+LSK+LMSTLFK+RQDEL+AVVDRAI+RL LGLQVQVG DV A  ++ +    E  SESLA+ARS RR+R++DQ+EIPE+H+ ITN+VL
Sbjct:  468 RRGSFGDVGVGQAVMVAAQELAHRCQVPGVSEAVTLVSILVNLVKDSRDDSSGGDSRLRQCRSIVMVLNRADKVAGNGENTTGKVARTLIDDVHEAIFDLVELIKTYQSKNKLSKVLMSTLFKRRQDELDAVVDRAIVRLQLGLQVQVGQDVKAGMDLYKGSIAEVQSESLADARSTRRRRKLDQVEIPEEHVTITNEVL 667
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BLAST of mRNA_Ecto-sp13_S_contig9979.21627.1 vs. uniprot
Match: D7FRQ5_ECTSI (Similar to CG1848-PA, isoform A/ leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ5_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 2.930e-58
Identity = 124/210 (59.05%), Postives = 156/210 (74.29%), Query Frame = 3 
Query:  267 SPLDSCRPKDIRR----GVGYGQTVMAAAQELAQHCQIPGVSEAAKAVSILERLVSGSRDYAVRGDAGVKQCRSIVIMLERAAK----GGDTNGEAA*ALMEDVHDAVCDLVELIRTYQSKNRLSKMLMSTLFKQRQDELNAVVDRAILRLHLGLQVQVGHDVSAVKEVMRRHKEAISESLAEARSARRQRRIDQLEIPEDHMLITNKVL 872
            +P  +  P   RR    G+GYGQ V+AAA+EL  +CQIPGV EAA AVSIL RLV  SRD  +    GVK+CRSIV ML+RAAK    GGDT+ E    LME+VH AV DLVELI+TY++K++L++ML STLFK+RQDELNAV+DRAI  LHLGLQVQVGHDV+ + +      +  +ES+AEAR  RR+R++DQ EIPEDH+ ITN++L
Sbjct:  476 APSPAAAPAGGRRRTSCGIGYGQAVLAAAEELVHNCQIPGVCEAATAVSILIRLVLDSRD--LTSSPGVKRCRSIVTMLQRAAKVVGTGGDTSTEEGRVLMEEVHGAVSDLVELIKTYENKSKLAQMLTSTLFKRRQDELNAVLDRAIWGLHLGLQVQVGHDVAHLVKRSTAEAQDQAESVAEARRLRRRRKLDQNEIPEDHVSITNEML 683
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BLAST of mRNA_Ecto-sp13_S_contig9979.21627.1 vs. uniprot
Match: D8LHV1_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHV1_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 1.550e-57
Identity = 124/210 (59.05%), Postives = 154/210 (73.33%), Query Frame = 3 
Query:  267 SPLDSCRPKDIRRGVGYGQTVMAAAQELAQHCQIPGVSEAAKAVSILERLVSGSRDYAVRGDAGVKQCRSIVIMLERAAK----GGDTNGEAA*ALMEDVHDAVCDLVELIRTYQSKNRLSKMLMSTLFKQRQDELNAVVDRAILRLHLGLQVQVGHDVSAVKEVMRRHK----EAISESLAEARSARRQRRIDQLEIPEDHMLITNKVL 872
            S  DS R   +   VG GQ V+  AQELA HCQ+PGVSE A  VS+L  LV+ S D     D  ++QCRSI+I+L RA K    G +T GE    L+EDVH+A+ DLVELI+TYQSKN+LSK+LMSTLFK+RQDEL+AVVDRA++RL LGL +QVG DVSA+K  M ++K    EA SESLA+AR  RRQR++DQ+EIPE H+ ITN+VL
Sbjct:  625 SQTDSHRASVVT-SVGGGQAVLLLAQELAHHCQVPGVSEVATLVSLLVNLVTDSCDNNGGSDGRLRQCRSIIILLNRADKVAGNGENTTGEVTRMLIEDVHEAIFDLVELIKTYQSKNKLSKVLMSTLFKRRQDELDAVVDRAMVRLQLGLHMQVGQDVSAIKTGMDQYKGSIAEAQSESLADARRTRRQRKLDQVEIPEGHLTITNEVL 833
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BLAST of mRNA_Ecto-sp13_S_contig9979.21627.1 vs. uniprot
Match: D8LH32_ECTSI (Leucine rich repeat tyrosine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH32_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 1.400e-54
Identity = 121/209 (57.89%), Postives = 150/209 (71.77%), Query Frame = 3 
Query:  306 GVGYGQTVMAAAQELAQHCQIPGVSEAAKAVSILERLVSGSRDYAVRGDAGVKQCRSIVIMLERAAK----GGDTNGEAA*ALMEDVHDAVCDLVELIRTYQSKNRLSKMLMSTLFKQRQDELNAVVDRAILRLHLGLQVQVGHDVSAVKEVMRRHKEAISESLAEARS----------------ARRQRRIDQLEIPEDHMLITNKVL 872
            GVGYGQ V+AAA+ELA HCQIPG+SEAA AVSIL  LV  + D  +   AGVK+CRSIV+MLERAAK    GGDT+ E    LME+VHDAV DLVELI +YQ+K++L K+L STLFK+RQDELNAV+DRAI  LHLGLQVQVGHDV+ +       K + +E+ A+A                  +RRQR++DQ+EIPE+H+ IT +VL
Sbjct:  645 GVGYGQAVLAAAEELAHHCQIPGISEAATAVSILIHLVVDTED--LTSSAGVKRCRSIVMMLERAAKVLGKGGDTSTEEERVLMEEVHDAVSDLVELITSYQNKSKLGKVLTSTLFKRRQDELNAVIDRAIWGLHLGLQVQVGHDVAHLV------KRSTAEAQAQAXXXXXXXXXXXXXXXTLRSRRQRKLDQIEIPEEHVSITTEVL 845
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BLAST of mRNA_Ecto-sp13_S_contig9979.21627.1 vs. uniprot
Match: D7FL57_ECTSI (Hypothetical leucine rich repeat kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL57_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 3.290e-54
Identity = 111/203 (54.68%), Postives = 150/203 (73.89%), Query Frame = 3 
Query:  309 VGYGQTVMAAAQELAQHCQIPGVSEAAKAVSILERLVSGSRDYAVRGDAGVKQCRSIVIMLERAAK----GGDTNGEAA*ALMEDVHDAVCDLVELIRTYQSKNRLSKMLMSTLFKQRQDELNAVVDRAILRLHLGLQVQVGHDVSAVKEVMRRHKEAI-----------SESLAEARSARRQRRIDQLEIPEDHMLITNKVL 872
            +G G+ V  AAQELA HCQIPGVSEAA AV ++  LV+  RD A   ++ ++QC ++V+ L+RAAK    GGDT GE A  ++EDVH A+ DLV+LI+TYQSKN+LS++ MSTLFK+RQ+ELNA+VD+A++RL LGLQ+QVG DV AVK+     KE I           SES+AEAR  +RQR++DQ+EIP +++ ITN++L
Sbjct:  509 IGLGRAVFEAAQELAHHCQIPGVSEAATAVCMMANLVTDGRDNARASESRLRQCSTVVMALKRAAKVADKGGDTIGEVARGMIEDVHGAIFDLVQLIKTYQSKNKLSRLFMSTLFKRRQEELNAIVDQAMMRLQLGLQLQVGQDVGAVKDKFDSVKEGIDLYQLSLSEAASESVAEARRVKRQRKLDQVEIPAEYLSITNELL 711
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BLAST of mRNA_Ecto-sp13_S_contig9979.21627.1 vs. uniprot
Match: D7G7F2_ECTSI (Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs/ leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F2_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 1.320e-53
Identity = 111/203 (54.68%), Postives = 151/203 (74.38%), Query Frame = 3 
Query:  309 VGYGQTVMAAAQELAQHCQIPGVSEAAKAVSILERLVSGSRDYAVRGDAGVKQCRSIVIMLERAAK----GGDTNGEAA*ALMEDVHDAVCDLVELIRTYQSKNRLSKMLMSTLFKQRQDELNAVVDRAILRLHLGLQVQVGHDVSAVKEVMRRHKEAI-----------SESLAEARSARRQRRIDQLEIPEDHMLITNKVL 872
            +G G+ V+AAAQEL  HCQIPGVSEAA AV ++  LV+  RD A   ++ ++QC ++V+ L+RAAK    GGDT GE A  ++EDVH A+ DLV+LI+TYQSKN+LS++ MSTLFK+RQ+ELNAVVD+AI+RL LGLQ+QVG DV AVK+ +   KE I           SES+AE R  +RQR++DQ+EIP +++ IT+++L
Sbjct:  687 IGLGRAVLAAAQELVHHCQIPGVSEAATAVCMMATLVTDGRDNARASESRLRQCSTVVMALKRAAKVADKGGDTIGEVARGMIEDVHGAIFDLVQLIKTYQSKNKLSRLFMSTLFKRRQEELNAVVDQAIMRLQLGLQLQVGQDVGAVKDKLDSVKEGIDLYQLSLSEAASESVAEDRRVKRQRKLDQVEIPAEYLSITDELL 889
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9979.21627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLN5_ECTSI1.150e-9377.88Protein kinase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5KA37_9PHAE1.880e-6667.53Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FN19_ECTSI3.410e-6667.53Putative CTR1-like protein kinase/ leucine rich re... [more]
D7FLJ2_ECTSI1.780e-6166.32TKL family protein kinase protein kinase/ putative... [more]
D8LRE9_ECTSI8.830e-5962.00Transmembrane receptor kinase n=2 Tax=Ectocarpus s... [more]
D7FRQ5_ECTSI2.930e-5859.05Similar to CG1848-PA, isoform A/ leucine rich repe... [more]
D8LHV1_ECTSI1.550e-5759.05Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LH32_ECTSI1.400e-5457.89Leucine rich repeat tyrosine kinase n=1 Tax=Ectoca... [more]
D7FL57_ECTSI3.290e-5454.68Hypothetical leucine rich repeat kinase n=1 Tax=Ec... [more]
D7G7F2_ECTSI1.320e-5354.68Tyrosine kinase specific for activated (GTP-bound)... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9979contigEcto-sp13_S_contig9979:2..3536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score136.7
Seed ortholog evalue7.1e-30
Seed eggNOG ortholog2880.D7G7X9
Preferred nameRIPK4
Model size1417
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K14767,ko:K16175,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04390,ko04391,ko04530,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05165,ko05169,ko05203,map04064,map04210,map04217,map04390,map04391,map04530,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05165,map05169,map05203
Hectar predicted targeting categoryother localisation
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
Exons6
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG0515@1,COG4886@1,KOG0192@2759,KOG0619@2759
EC2.7.11.1
Cds size366
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9979.21627.1prot_Ecto-sp13_S_contig9979.21627.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9979 2..656 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464257.6274629-CDS-Ecto-sp13_S_contig9979:1..991681464257.6274629-CDS-Ecto-sp13_S_contig9979:1..99Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9979 2..99 -
1681464257.6402206-CDS-Ecto-sp13_S_contig9979:388..6561681464257.6402206-CDS-Ecto-sp13_S_contig9979:388..656Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9979 389..656 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464257.6496758-UTR-Ecto-sp13_S_contig9979:656..7761681464257.6496758-UTR-Ecto-sp13_S_contig9979:656..776Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9979 657..776 -
1681464257.6587274-UTR-Ecto-sp13_S_contig9979:1148..13141681464257.6587274-UTR-Ecto-sp13_S_contig9979:1148..1314Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9979 1149..1314 -
1681464257.6679542-UTR-Ecto-sp13_S_contig9979:1641..17071681464257.6679542-UTR-Ecto-sp13_S_contig9979:1641..1707Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9979 1642..1707 -
1681464257.6797976-UTR-Ecto-sp13_S_contig9979:2382..25741681464257.6797976-UTR-Ecto-sp13_S_contig9979:2382..2574Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9979 2383..2574 -
1681464257.6908803-UTR-Ecto-sp13_S_contig9979:3030..35361681464257.6908803-UTR-Ecto-sp13_S_contig9979:3030..3536Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9979 3031..3536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9979.21627.1

>prot_Ecto-sp13_S_contig9979.21627.1 ID=prot_Ecto-sp13_S_contig9979.21627.1|Name=mRNA_Ecto-sp13_S_contig9979.21627.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp
MIRLRSLHTVNVYGAMTSLPNRLVLVMELLAGGDLRSVLKRAEHPLPEAQ
CRQIIEVCAGMAFLHSKATVHGDLKSSNILLDGRGRAKANWGLWNFQMGS
EHGELDRPGDVHNEGGTRHSRQ
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mRNA from alignment at Ecto-sp13_S_contig9979:2..3536-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9979.21627.1 ID=mRNA_Ecto-sp13_S_contig9979.21627.1|Name=mRNA_Ecto-sp13_S_contig9979.21627.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3535bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9979:2..3536- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGCCCAAGAGCCCAAAGTCTCGACCTCGACGGCTCCAGCTGCCGTTGG
CACGGTGGTGCAGTCCAGCCGCGAGAAAACCGCGCCGCGCTCGGGCAAGG
ATAACGATAGAGCGCCTGCCGGCGGGGATGCTGAAGTCGTCTTGCCGACG
GAACATACATCGCTGCACGATACGAACTCCACCGCCAACGTGTCGACGGA
AGAGCGGAACGACCTAGCCGGGACGGCAATTCCTCATGAGAATGACCCTG
TCCCGGGAGATGGAGGAGCCCCCTCGACAGCTGCCGTCCGAAGGACATCC
GACGAGGCGTCGGGTACGGTCAAACGGTCATGGCAGCGGCCCAGGAGCTG
GCGCAGCATTGCCAGATCCCCGGGGTCAGCGAAGCGGCCAAGGCGGTGTC
GATTCTGGAGCGCTTGGTCTCGGGTAGTCGCGACTATGCGGTGCGGGGCG
ACGCCGGGGTCAAGCAGTGCCGGTCGATCGTCATCATGCTTGAGCGGGCG
GCGAAGGTTCTCAGCAAAGCAAGCGAGTAGACGGCCTTGGTCGTGTTTCA
TAGTTTTCGTGTCTTGCAGGATAGGTGCGAGATTGAAGGCGATGGGGCCA
CTTTCTGTTTCAAGATCGTTGCGATGCGAAAAGGGCGCAATACAGGGTCT
CACGAAAGAGGCTTGCAAGCACCAGCGCGGTGAGAACGTGGCAAGCTATA
CGTTAGTCTGTACCAGTCTTCACACGTACTTCAGCAGTGTACAGGACTAG
TTCGGTTTAGCTTTGTGTTTTTCTTCGGATCTTGGCACGCCACAAACCCG
TCTCCAGCAACACGTGGCTGGGCAGGGTCGTAGCCTACACCTGTGACCAC
GGATCCATGGAGACCGTGGCACGAAAATCTGATCTGAGGCACCTTTCGGA
AGGCGTGGATGTCGATACCTCCGTGCAAACCTACGCGCTCGGTACGTGGA
AACGGAATCCAGGGCGGCGACACGAACGGGGAAGCTGCGTGAGCCCTGAT
GGAAGACGTACACGACGCAGTGTGCGATCTCGTGGAGCTTATCAGGACGT
ATCAAAGCAAGAACAGGCTGTCCAAGATGTTGATGTCGACCCTGTTCAAG
CAGCGGCAGGACGAACTGAACGCTGTGGTGGATAGGGCCATCCTGCGCCT
GCACGTGAGGGTCGTGTGTTTTCTGAAGCTTGTTCTTTTGGTGTAGCACG
GTCCACCTCACTCTTGGTTGGTAGTTTTATTGTCTTGACGAGACAATGTC
ATTGCTTGCAGTTCTCTTACTAGCGCTGGTCTCGGGTCGTACGACTCGGG
CGAGTTGACCTCACATGGCGCCGGGGACTATACTAACTTTTCGAGGGACA
AATCACCACATTGAGGACCGATAACGCCTTTGTTCACCTCTGCCGCGCAC
TCGACTGGGTTGGGTCCTCTCACGGTTGTGAAACGAAACAGCAGTCAAAA
ACTACCAATGTCAGTGCATTACCCTCTTCGGGGGAAAGTCTTGGGATCAT
CTCGACCATCTCTGCTCCAATTGCAGGACCACAACAGGTAGCATCTACTG
GACGACTTTGAGTAAGTCAGCATGGGGCGGCTCGAACTGCGACTCCAAGT
GTGCGAGGGGCTTCCCTAGCATTGCATTTGAAGTCTAGCTCACTTTGGTG
TAGTTCACTCTGAGGGGCGGTCTTGTTCGGAAAATGCATCACCGCCTAGG
GGAAGCGCTTTGTCTTCACGTTCCCCAATATACGATCGAATCTATGTCCT
TTTCGCGAAAGAAGGCGCCAAGGTGCTGTCGATTTCCGCCCGCCGTTGTC
CTTTCCGCCTCTTTGGCTTCTTGGTCCAGCTGGGCCTTCAGGTGCAAGTG
GGACACGATGTTTCCGCGGTCAAGGAAGTGATGCGCCGGCACAAGGTGAG
CGCGGGAGACGGAGACAAACAAACCGGTTTCGTAGTATGAGTCCTATTGT
ACGTCTGCGGGAGTGCGACGCTGTTGCCAGTTGTCCACGGATTTTGCCTT
GAGGCATGCACCCACCACGGGGGGAGGCGGGCTATCCTTATTTTAGCCCC
AACGGCACGAATGCGTCGTATTCATATACAGGGATCATTCTGGCGTTTCA
CTCTCGCCGAGTCACTTTCAGCGGTTGGGGAGGATTCATCCGCTCGAGCG
TGATGTGCTCCTCTGTGGCTTGATGTTTTCCGTTTTGCTGCAAGGGGTCT
ATGGAGGACTCCGACTATGGAGGAGGCCATATCGGAGTCTCTGGCGGAAG
CCCGTAGCGCGAGGCGGCAGCGCAGGATCGATCAACTTGAAATCCCCGAG
GACCACATGCTTATAACGAATAAAGTGCTCCGGGGGATTTGGAGAGGTGT
TCATCGCAGACTGCAACGGGCGCAACGCTGCAGCGAAGGTTGGTCTGAGG
CAGCTGGAGCAGCAGTTCGTCCTGCAGACGTCGCGAGTAAAGTTGTATAC
GCCCGTAAAACAAAAAAAACTGTGGCAGAAAAAAATCTGATGTAGCCTCG
GAAGACTCACAATCTTCAATTATGAGTCGGGTGATAACCACTACACATAA
AGCCTACATAGCGGCCATTCGTGGCATGACCCTCGGTACTGAAAACCCTA
GCCTAGGCGAAAACTAGAGGTTGTTGAGTGCGGGCGTTAACTGTAATGTA
CCACCCCCCCACACCCGTTCGCACGAATATTCTTCAAGTCTCTGCGCTTC
CGCTGTGCGCTCTACCTCTCCATTTTCCTTGTCAATCCTGCTGCCGGACG
ACACCCTTAGGTACAACATGTTGCGCATGGCTTTGACAGACTTGGCCAGG
AAAATGTGTCAAGCAGAGGCGAGCCCGACACGCAGCAGCTGCAGAAACAG
CGCAAAGCGTTCTTGCACGAGCTGGACGCCATGATTCGTCTGAGGAGTCT
TCACACCGTCAACGTCTACGGAGCAATGACCTCCCTGCCAAACCGCCTGG
TCCTAGTCATGGAGCTTCTCGCGGGTGGCGACCTCCGAAGCGTGTTGAAA
CGCGCTGAGCATCCGCTTCCCGAGGCGCAGTGTCGGCAGATCATCGAAGT
CTGTGCGGGGATGGCCTTCTTACACAGCAAGGCGACGGTGCACGGCGACC
TCAAGTCCTCCAACATTCTCCTGGACGGGCGTGGAAGAGCAAAGGCAAGT
CCGGAGGGTATTTTTGTGTGGAGCATCTCGCGCCGTTGCAAGAATGTCGG
TCGGTTTCCGAGAGGTTGTGGACTTCCCTCGTTAATCTATCGTAGCGTGG
TTGTCTGTTTTTTTTAACGGCTTTTCCGACCCCTGGTTGCAGCGCCAGGC
TGCACCGAGTTGCCTTCTACCCCGTACAGTGTTTGTGTATGAATAAAACG
TTTGACGTGCGTGGTCGCAGCAGGCGCAAGAAAACAAAAGTGTGAAAAGC
AACTATGTGATCACCTCGTCTTGCATTTTGCCGCCAGATTGGGGACTTTG
GAATTTCCAGATGGGCTCAGAACACGGAGAACTCGACAGGCCTGGCGACG
TACACAACGAAGGCGGGACAAGGCACTCACGTCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9979:2..3536-

>mRNA_Ecto-sp13_S_contig9979.21627.1 ID=mRNA_Ecto-sp13_S_contig9979.21627.1|Name=mRNA_Ecto-sp13_S_contig9979.21627.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9979:2..3536- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTCGTCTGAGGAGTCTTCACACCGTCAACGTCTACGGAGCAATGAC
CTCCCTGCCAAACCGCCTGGTCCTAGTCATGGAGCTTCTCGCGGGTGGCG
ACCTCCGAAGCGTGTTGAAACGCGCTGAGCATCCGCTTCCCGAGGCGCAG
TGTCGGCAGATCATCGAAGTCTGTGCGGGGATGGCCTTCTTACACAGCAA
GGCGACGGTGCACGGCGACCTCAAGTCCTCCAACATTCTCCTGGACGGGC
GTGGAAGAGCAAAGGCAAATTGGGGACTTTGGAATTTCCAGATGGGCTCA
GAACACGGAGAACTCGACAGGCCTGGCGACGTACACAACGAAGGCGGGAC
AAGGCACTCACGTCAG
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