mRNA_Ecto-sp13_S_contig9975.21624.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9975.21624.1
Unique NamemRNA_Ecto-sp13_S_contig9975.21624.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9975.21624.1 vs. uniprot
Match: A0A6H5KA77_9PHAE (FAD-binding FR-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA77_9PHAE)

HSP 1 Score: 439 bits (1129), Expect = 2.900e-146
Identity = 215/221 (97.29%), Postives = 217/221 (98.19%), Query Frame = 1 
Query:    1 QLLSASWVVGVFCFFLPLFIFACMAVDDGWEGMTAADVKSYASSSATQSYGTVWNLKLSPSLILKLFPDVLIYWSFAYLVATVALVARRWRRLERFFHSPFQPFGGRLRQRLDKAAARRGRGGEKGCLASLGDKREWCSSPGCSSPPSVGRKNGEVFLATAFFALLLCEGLYWYLDHGWGNSSIDSLTWQERFARTMGQLANVTMGLMILPVLRNGVFQNV 663
            QLLSASWVVGVFCFFLPLFIFACMA+DDGWEGMTAADVK+YASSSATQSYGTVWNLKLSPSLILKLFPDVLIYWSFAYLVA VALVARRWRRLERFFH PFQPFGGRLRQRLDKAAARRGRGGEKGCLASLGDKREWCSSPG SSPPSVGRKNGEVFLATAFFALLLCEGLYWYLDHGWGNSSIDS TWQERFARTMGQLANVTMGLMILPVLRNGVFQNV
Sbjct:  266 QLLSASWVVGVFCFFLPLFIFACMAMDDGWEGMTAADVKAYASSSATQSYGTVWNLKLSPSLILKLFPDVLIYWSFAYLVAVVALVARRWRRLERFFHGPFQPFGGRLRQRLDKAAARRGRGGEKGCLASLGDKREWCSSPGSSSPPSVGRKNGEVFLATAFFALLLCEGLYWYLDHGWGNSSIDSFTWQERFARTMGQLANVTMGLMILPVLRNGVFQNV 486
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BLAST of mRNA_Ecto-sp13_S_contig9975.21624.1 vs. uniprot
Match: D7FS89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS89_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 1.180e-55
Identity = 89/93 (95.70%), Postives = 92/93 (98.92%), Query Frame = 1 
Query:    1 QLLSASWVVGVFCFFLPLFIFACMAVDDGWEGMTAADVKSYASSSATQSYGTVWNLKLSPSLILKLFPDVLIYWSFAYLVATVALVARRWRRL 279
            QLLSASWVVGVFCFFLPLFIFACMAVDDGWEGMTAADVK+YASSSATQSYGTVWNL+LSPSLILKLFPDVLIYWSFAYLVA VALVARRWRR+
Sbjct:   10 QLLSASWVVGVFCFFLPLFIFACMAVDDGWEGMTAADVKAYASSSATQSYGTVWNLELSPSLILKLFPDVLIYWSFAYLVAAVALVARRWRRV 102
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BLAST of mRNA_Ecto-sp13_S_contig9975.21624.1 vs. uniprot
Match: A0A7S2UXK3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXK3_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 6.210e-14
Identity = 45/99 (45.45%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:   25 VGV-FCFFLPLFIFACMAVDDGWEGMTAADVKSYASSSATQSYGTVWNLKLSPSLILKLFPDVLIYWSFAYLVATVALVARRWRRLERFFHSPFQPFGG 318
            VGV F +F  LF F CM + D W+ +T ++++S+A+   ++S GTVW  K S SLILKLFPD+L+++ F ++VA VALVA+   RL+      F+  GG
Sbjct:  141 VGVLFVWFFFLF-FCCMVLPDMWKDLTVSELQSWAAEDTSESDGTVWKWKWSDSLILKLFPDILMFYGFLFVVALVALVAQAVPRLQEALFQTFKWSGG 238
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9975.21624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KA77_9PHAE2.900e-14697.29FAD-binding FR-type domain-containing protein n=1 ... [more]
D7FS89_ECTSI1.180e-5595.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2UXK3_9STRA6.210e-1445.45Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9975contigEcto-sp13_S_contig9975:665..6070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size663
Hectar predicted targeting categorysignal peptide
Exons5
Ec32 ortholog descriptionFerric reductase transmembrane component-like domain
Ec32 orthologEc-05_004940.1
Cds size663
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464257.390219-CDS-Ecto-sp13_S_contig9975:664..8091681464257.390219-CDS-Ecto-sp13_S_contig9975:664..809Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9975 665..809 -
1681464257.4014385-CDS-Ecto-sp13_S_contig9975:3075..33171681464257.4014385-CDS-Ecto-sp13_S_contig9975:3075..3317Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9975 3076..3317 -
1681464257.412409-CDS-Ecto-sp13_S_contig9975:4052..41331681464257.412409-CDS-Ecto-sp13_S_contig9975:4052..4133Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9975 4053..4133 -
1681464257.4224267-CDS-Ecto-sp13_S_contig9975:4607..47341681464257.4224267-CDS-Ecto-sp13_S_contig9975:4607..4734Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9975 4608..4734 -
1681464257.434786-CDS-Ecto-sp13_S_contig9975:6002..60701681464257.434786-CDS-Ecto-sp13_S_contig9975:6002..6070Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9975 6003..6070 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9975.21624.1prot_Ecto-sp13_S_contig9975.21624.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9975 665..6070 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9975.21624.1

>prot_Ecto-sp13_S_contig9975.21624.1 ID=prot_Ecto-sp13_S_contig9975.21624.1|Name=mRNA_Ecto-sp13_S_contig9975.21624.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=221bp
QLLSASWVVGVFCFFLPLFIFACMAVDDGWEGMTAADVKSYASSSATQSY
GTVWNLKLSPSLILKLFPDVLIYWSFAYLVATVALVARRWRRLERFFHSP
FQPFGGRLRQRLDKAAARRGRGGEKGCLASLGDKREWCSSPGCSSPPSVG
RKNGEVFLATAFFALLLCEGLYWYLDHGWGNSSIDSLTWQERFARTMGQL
ANVTMGLMILPVLRNGVFQNV
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mRNA from alignment at Ecto-sp13_S_contig9975:665..6070-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9975.21624.1 ID=mRNA_Ecto-sp13_S_contig9975.21624.1|Name=mRNA_Ecto-sp13_S_contig9975.21624.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5406bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9975:665..6070- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTGCTCTCCGCCTCCTGGGTGGTTGGGGTCTTCTGCTTCTTCTTGCC
GCTGTTTATCTTTGCATGGTAAGGAACAGACAGAGACAAGAGACTGAAAC
AGACATGCGCACAGACAGACAGACAGACAGACAGACAGACAGACAGACAG
ACAGACAGACATGCCCGCGGCAGACAAGAAGGACAGCAGGCCGCTGTTCA
TCTTTGCATGATAAGAGACAGACAGAGACAGAGACAGAGACAGAAACAGA
CATGAGTACGGAGAGACAGACAGACAGACAAACATGCCCGCAGCGGACAA
GAAGGACAGCAGGCCGATGTTCATCTTTGCATGATAAGAGACAGACAGAG
ACAGAGACAGAGACAGAAACAGACATGAGTCCAGACAGACAGACAGACAG
ACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACATGCCCGC
GGCAGACAAGAAGGACAGCAGGCCGATGTTTATCTTTGCAAGGTAAGAAA
CAGATAGAGACAGAGACAGAAACAAACATGCGTGCAGAGAGACAGACAGA
CAGACAGACATGCGTGCAGCGAAGAAGAAGGACAGCAGGTAAGCAGGCGC
ATGAACGGACAGGGACATAAAAAGAGAGTTTTTCGTTCTGAGAGGGAGAG
GAGTGAAGTGGGAGGTAGATGGGCAGGGCGATAGAGAGGCGGGCAGAGAG
AGCCGAAAGCGAGAGAGGAGGAGATGGACAGGACAGAAGGAGACAGGGCA
GGGAGTACAGAGATACAGGGCAACCGCATCCAGTCGAAGAACGTTTGAAA
TCCAAGTGCAAGGTAGCTCGTGTTGTGGGTTTCCTGTTGTTTTTGTCCTC
GTGGTCGTTGTCTTCACCTGCGGAAATTACCCCGCCTCCCCTTCCGAGTC
CCTCTTCTTCCCATAACTGTGCCGGGCTAACAATTTCCGGTGGTCACAAA
CTGACCCCTTCTGTAGAGAATGCGTGCTGAAAACATTTTCGTTCTCAAGA
AATCTTCCACACGAACCTTTGTTTGCCCGCCTCCCTTGTTGTTCCGTTCT
GGCGGTTTCCCTCGTTCCGATTTTTTGCGCCCCTCTTCCTCATCTTGGTC
TATCTTGTGGCCGCCCGTACAGTACGAGCCCGTAGTGAAGAAATATTTCG
TGAAGGCAGAGGCTGAAATTTTCGCGAAAAAACGAGGACAGAGTTGAAAA
GCAGCAGCTCAGCGGCGGATACTATTTTAAACTCTGTTCTGACTAGTTGT
CCTCGGCAGTGGCAGCGAAATATGAACCTGGACCTCGACCCGGTTTTGAC
GTTTCCTACCTCCGGACCCGTACCGTACCGTGTTAGCATGGCTGTGGACG
ACGGTTGGGAGGGGATGACGGCAGCGGACGTGAAATCCTACGCGTCCTCG
TCGGCGACCCAGTCCTACGGGACCGTCTGGAACCTCAAGCTCTCCCCCAG
TCTCATCCTCAAGGTACCTTGACCTATGATACCTGTATTCGTGTGTGTTT
CTACTGCTAGCACGCCAACCGGTTGGCCAATGAAAAGGCCGTTTGTGTGT
AACGGTCGTGGCTCCGATGTGGATCGAAGTACGAGGGTGGTGTGACGAAG
TGCCTCTGCCCTCTTATATCTGAGCTCCCCCTTTTTGGTATCGAAACAAG
AAGGTACCCAACTACGCTACATAGCGGGTCGAGTCCGTGACAACCGATTT
CGACCCTCTTGTATCGGAGCCCCCCTCTTATAAGGTTCCCTGCATGATTG
TGCCTCCTGATTTCCGTCCGCCTTTCTGCCTGCCGCCTGGTTCTGTCTGT
TCGCCTCTTGTCGTGTTACCCGTCCGGTTCTTCCTGCCTGGTTCTCCTGC
CCTGATTCTACCCGTCCGGTTTTACCCGCCGGATTCTCTCTGCCTGGTTC
TGTCCGCCTGATTATGTCCGCGTATTTAATCGAGCAGCTGTTTCCGGACG
TGCTCATCTACTGGAGCTTCGCCTACTTGGTGGCGACGGTAGCGTTGGTG
GCGCGGAGGTGGCGACGGGTGAGGCAACAACAACGTTCACACGTCACAAG
TTGATCCCTGAAACGGCGGCAAATACTCCGCGTTAGTGCTTCCGCGGCTG
TGGTTCTGCACGCCGACGGTGCCAAAATGGCATGATTTGTAGTACGGCGG
TCATTTTTTTCTTTTCTCTTGTCTCGAGGACTGGAAGAGAAAATGAGGTC
CACACGTTAAGCATTTTGTGAAGACGTCGACACCACCACCAGTATCACCA
ACATCATCATCAGCAGCAACAACAACAGCATGAGCAACAACACTGCGTGT
GCACTCGTTTCCGAACGCCTCTTCCTCTGCTACTCCTCCGTAGAAGTTGC
CAACGACAACCCAAGCGTGACCCCGGAGCCTTTTTGTTCGATCCCTTTTC
GACCGCCTCTCCTCGCGACCCTTGTCAACGAACAACCATATCGACGACAC
CACCACCACGACGATCGATGACGACGACGACGACGACATCATCATCAACG
TCAACATCAAACTGCGTACAACGTCACCATCTTCATCATCCACAACAACA
ACGTCTTCATCATCAACACCGGCCACCACCACCACTACCAACAACAACAA
CAACCATCATCATCATCATCGTCGTCGTCGTCAACACCATCAACAACAAC
TTTAAATTACCACGTCACTACCACCACCACCACTACCACCATCAACAACA
ACACCTACATCGTCACCATCATCAACAACAACGAAAATAACAACAACGAA
AAGCTGGAGCGTTTCTTCCACTCCCCTTTCCAGCCCTTCGGCGGACGACT
GCGGCAGCGACTCGACAAGGCCGCGGCACGAAGGGGGCGAGGAGGAGAAA
AAGGATGCCTTGCTTCTCTGGGGGACAAGAGGGAATGGTGTTCGTCGCCG
GGTTGCTCTTCGCCGCCGTCTGTTGGCCGGAAGAACGGAGAGGTGTTCCT
CGCCACGGCGTTTTTCGCCCTCCTCTTGTGCGAGGGCCTCTACTGGTGAG
AGAATCTTTTTTGTTTAAAACACAGCAAAGTGTGAAAAGAGAAATCGTCC
TCCACAGACGTTGGGGAGATTGTACCTTTATGAAGGCGGTGTCCACAAAA
TCCATCGTTAGGTTCCAAGGCGCAGCAAAGAGGAAGAGGTACAGGTTAGC
ACCCATACTTTTGCCAGAGGCTGGGAGTTTTCTTTCCCAGGGTTATTTTG
GGGTCTAGGCTGGACTGTCAGATTTTTTTTGCGCAGAGCGAGAGCGAGCG
GGAGAGAGAGGAGTGCAGAGAAAGACACCAGCGTACTTCTGCACACACAA
CAGCTATCTCCACGTGTAGGCCATGAGGGAAGCCGGCGACAGGGTGGTTC
CCACAGACAGGGTCGTAGAAGGGTTGATGGGTGGTCGCCTGCGGTCAGTA
GGGCAGGTTAGCTGTGTAGCCTTTGAAATGATCAGTGGTCTAGCTGCCTG
AACTACTCTATTTTCGGTATATTGTAAATGATCAGTCCAGAGAGGGCGAA
GTGATCAGCGAACACACATAGCTGGTATTTGTACCTCTGAACTTCTCTGT
TCTCTGCCCCCCCCCGAAATGTGTCCTGCCAGCTCTCTAGAGCCTGTGGT
TATCAAACAACAAGCACACCCACCAGCACACACCTGTACCTCGCGGTTCT
TAGGTTGGGGCGAGGGTATGTCTGGCGCTACGAGCGTGGATGTGTTGCTG
ATTTGTTTTACTCCTCTGCAGCAGTAGTAGCAGTGGTGTTGCAGCGTTGT
AGCTGCTGACACGATGACTGCTGGATCTTGGGAACGATTTTCAAGTTGTT
TGGGTATGCAGCACACCACACGATATCCTCGATATCTGGGCTTCCGCAGG
GCTTGCAATACCTCTCCCTTTTGCTGTCCTCTGCTCTTTGCAGCAGTGGC
GTTTTACGTTCGGGCGAGGATGGGTATGTGTGGTGCTACGAAAGAACACA
AACACATGTCTGTATTTATGCATGTAGACGCACGTACAGTACAAACGTTG
AGAGATTCATGAATTGGCATTGATTGGCCCCATTCCCGATACCCTGATTT
TTCCCGCTGTCGCTGCCGTCTCTTCATTGGTCAGCCGGTTAGCGCGGGTC
CTGAAAATCTAGACACACCTACCTATGAACTTGCCAATACCCGGCCGGAA
GGGCGGCAGGGGGGCAACTCCACGACTTGCCACTACATCAGCTTTTGCAA
ATGATCAGTCTACGATCAGTCAGAACGCCTCAAGACTCAAAAGGGTTAAG
CTAGAAATTACCGATGTATGCGTTTTAGTTTGGGGGTTCTTAATCTTAGC
CGGGCTCACAAATGGTTTGCTCAAGTTCTCAGATGTGGAGTTTTTCGAGG
CTACGTCCATTTCTTGACTCCCAAGCTCTCTCAACTGCCAAGTTCTCTAA
ACAGCCAGTTGTCTTAACTGCCAAGTAGTCTTAACTGCCAAGTAGTCTTA
ACTGCCAAGTAGTCTTAACTGCCAAGTAGTCTTAACTGCTAAGTTGTCTT
AGCTGCCAAGTTCTCTCAACTGCCAAGTTCTCTAAACTGCCAGTTGTCTT
CACTGCCAAGTTGTCTTAACTGTCAAGTCCTCTTAGCTGCAAAGTTCTCT
GAACTTCCAAGTTCTCTGAACTGCTAATTTATCTCAACTTAACTGCCAAG
TTATCTTAATCTAACTGCCACGGTATCTTAACTGCCAAGGTATCTTATTC
GCCAAGTTAACTTATCTGCCAAGTTATCTAAACTGCCAAGTTGTTGCGTT
AAGTGCGGGCACTAGCGGTAGGTGAGTCGTTCTCTCGGTTACTTCATTGA
TTGGCATACACACGTGTTGGGGCCGCGGCCGCGTAAGGCGATAATCGCAC
GGGTCACTTCATTGTTGAAGCATCACAAGAAGAGAACGGATCGGTTCGGT
TTTGAAGCATCACAGGTGTTCGTACTGGAAGGCACCGTTTTTTGGTGGAA
GACGCGGCATGGCTTTTTGTGCCCGTGGTCGGTTGCATCAAGCAAGACGC
ATGTGTTGTGCTTTTATTTCGATCAAGAATTGTCATATATGTGGCGTTAC
AAGCACTCGACGTGGCTTAAACCTTCGCGTAAGAGCATGGCAAAAAATAA
AAATAGGTGAAAATTCATGCAGAAGACGCGTGCCGTGTGTGTGTGTGTTT
GCTATTTAGTTTTCCTTCACGATGAGGTCGAATATACAGGAGAACGAAAA
TGAAGGAATGAATGACAACAACAATGTTCGCGTGTAATTTTTTTTCTTTT
GTTTTTTTTAGGTATCTGGACCACGGATGGGGCAATTCGTCTATCGACTC
CTTGACCTGGCAGGAACGGTTCGCGCGCACGATGGGCCAGCTCGCGAACG
TCACGATGGGGCTCATGATTCTGCCAGTGTTACGAAACGGCGTGTTCCAA
AACGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9975:665..6070-

>mRNA_Ecto-sp13_S_contig9975.21624.1 ID=mRNA_Ecto-sp13_S_contig9975.21624.1|Name=mRNA_Ecto-sp13_S_contig9975.21624.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=663bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9975:665..6070- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTGCTCTCCGCCTCCTGGGTGGTTGGGGTCTTCTGCTTCTTCTTGCC
GCTGTTTATCTTTGCATGCATGGCTGTGGACGACGGTTGGGAGGGGATGA
CGGCAGCGGACGTGAAATCCTACGCGTCCTCGTCGGCGACCCAGTCCTAC
GGGACCGTCTGGAACCTCAAGCTCTCCCCCAGTCTCATCCTCAAGCTGTT
TCCGGACGTGCTCATCTACTGGAGCTTCGCCTACTTGGTGGCGACGGTAG
CGTTGGTGGCGCGGAGGTGGCGACGGCTGGAGCGTTTCTTCCACTCCCCT
TTCCAGCCCTTCGGCGGACGACTGCGGCAGCGACTCGACAAGGCCGCGGC
ACGAAGGGGGCGAGGAGGAGAAAAAGGATGCCTTGCTTCTCTGGGGGACA
AGAGGGAATGGTGTTCGTCGCCGGGTTGCTCTTCGCCGCCGTCTGTTGGC
CGGAAGAACGGAGAGGTGTTCCTCGCCACGGCGTTTTTCGCCCTCCTCTT
GTGCGAGGGCCTCTACTGGTATCTGGACCACGGATGGGGCAATTCGTCTA
TCGACTCCTTGACCTGGCAGGAACGGTTCGCGCGCACGATGGGCCAGCTC
GCGAACGTCACGATGGGGCTCATGATTCTGCCAGTGTTACGAAACGGCGT
GTTCCAAAACGTG
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