prot_Ecto-sp13_S_contig9971.21619.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9971.21619.1
Unique Nameprot_Ecto-sp13_S_contig9971.21619.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length99
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9971.21619.1 vs. uniprot
Match: D7G205_ECTSI (HMMR_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G205_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 6.340e-46
Identity = 93/99 (93.94%), Postives = 93/99 (93.94%), Query Frame = 0 
Query:    1 RLASENAALVGHNNNKQKIKHLQNLKKESIRLQNEKARQASDLALAIAVLEAVGVLPKEVETTSNAVAVKRRGRGLHSRRSSGANSLSPARFNRLEAHG 99
            RLASENAALVGHNNNKQKIKHLQNLKKESIRLQNEKARQASDLALAIAVLEAVGVLPKE  TTS AV  KRRGRGLHSRRSSGANSLSPARF RLEAHG
Sbjct:  942 RLASENAALVGHNNNKQKIKHLQNLKKESIRLQNEKARQASDLALAIAVLEAVGVLPKEAGTTSTAVVAKRRGRGLHSRRSSGANSLSPARFKRLEAHG 1040
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9971.21619.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G205_ECTSI6.340e-4693.94HMMR_C domain-containing protein n=1 Tax=Ectocarpu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 15..42
IPR031794Hyaluronan-mediated motility receptor, C-terminalPFAMPF15908HMMR_Ccoord: 2..44
e-value: 3.6E-7
score: 30.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9971contigEcto-sp13_S_contig9971:1500..3355 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9971.21619.1mRNA_Ecto-sp13_S_contig9971.21619.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9971 1500..3355 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9971.21619.1 ID=prot_Ecto-sp13_S_contig9971.21619.1|Name=mRNA_Ecto-sp13_S_contig9971.21619.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=99bp
RLASENAALVGHNNNKQKIKHLQNLKKESIRLQNEKARQASDLALAIAVL
EAVGVLPKEVETTSNAVAVKRRGRGLHSRRSSGANSLSPARFNRLEAHG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031794HMMR_C