mRNA_Ecto-sp13_S_contig9970.21616.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9970.21616.1
Unique NamemRNA_Ecto-sp13_S_contig9970.21616.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9970.21616.1 vs. uniprot
Match: A0A6H5JK68_9PHAE (Cysteine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JK68_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 5.590e-43
Identity = 83/85 (97.65%), Postives = 84/85 (98.82%), Query Frame = 1 
Query:    1 AVWKLEDPAVLARERQQREQEQLRRLEAKAETKRKAAEKEARKKIPASEYFRGLKGDDGKAFYTQFDDNGVPTHDAAGEPIVKDK 255
            AVWKLEDPAVLARERQQREQEQLRRLEAKAETKRKAAEKEARKKIPASEYFRGLKG+DGKA YTQFDDNGVPTHDAAGEPIVKDK
Sbjct:  557 AVWKLEDPAVLARERQQREQEQLRRLEAKAETKRKAAEKEARKKIPASEYFRGLKGEDGKALYTQFDDNGVPTHDAAGEPIVKDK 641
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BLAST of mRNA_Ecto-sp13_S_contig9970.21616.1 vs. uniprot
Match: A0A812UK10_SYMMI (Cysteine--tRNA ligase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UK10_SYMMI)

HSP 1 Score: 64.7 bits (156), Expect = 2.980e-10
Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:    1 AVWKLEDPAVLARERQQREQEQLRRLEAKAETKRKAAEKEARKKIPASEYFRGLKGDDGKAFYTQFDDNGVPTHDAAGEPIVK 249
            +VWKL+DPA L  ER+Q+E  +  + E +AE +RK  E+E + K+P  + FR +        ++ FDDNG+PTHD  G PI K
Sbjct:  529 SVWKLDDPATLRLEREQKEAVKRAKEEQRAEARRKQLEREEKAKVPPQDMFRSMIDQ-----FSAFDDNGMPTHDTQGVPISK 606
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BLAST of mRNA_Ecto-sp13_S_contig9970.21616.1 vs. uniprot
Match: L1K2A7_GUITC (Cysteine--tRNA ligase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K2A7_GUITC)

HSP 1 Score: 58.2 bits (139), Expect = 6.030e-8
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:    4 VWKLEDPAVLARERQQR----EQEQLRRLEAKAETKRKAAEKEARKKIPASEYFRGLKGDDGKAFYTQFDDNGVPTHDAAGEPIVK 249
            +WKL+DP VLARERQQ+     + Q +++E K E  RK  EK +   + A E F+ L        Y++FDD G+PTH+AAGE + K
Sbjct:  578 LWKLDDPEVLARERQQKLMQAAEAQKKKVENKLEKVRKELEKWSGCSVAAGEMFKPLTDK-----YSKFDDQGIPTHNAAGEELSK 658
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BLAST of mRNA_Ecto-sp13_S_contig9970.21616.1 vs. uniprot
Match: A0A7S0T994_9CHLO (Hypothetical protein n=2 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0T994_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 7.990e-8
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:    1 AVWKLEDP----AVLARERQQREQEQLRRLEAKAETKRKAAEKEARKKIPASEYFRGLKGDDGKAFYTQFDDNGVPTHDAAGEPIVK 249
            A+WKL D       L R+R+ +  ++ +  EAKAE  RKAAEKEA+ KIP SE F   K  + +  Y+++DD G+PTHD  GE + K
Sbjct:  323 ALWKLYDADELKKELERDREAKALKEAKAAEAKAELARKAAEKEAKAKIPPSEMF---KIGEYEGLYSKYDDEGLPTHDKDGEELPK 406
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BLAST of mRNA_Ecto-sp13_S_contig9970.21616.1 vs. uniprot
Match: A0A7S0T8V7_9CHLO (Cysteine--tRNA ligase n=2 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0T8V7_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 8.280e-8
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:    1 AVWKLEDP----AVLARERQQREQEQLRRLEAKAETKRKAAEKEARKKIPASEYFRGLKGDDGKAFYTQFDDNGVPTHDAAGEPIVK 249
            A+WKL D       L R+R+ +  ++ +  EAKAE  RKAAEKEA+ KIP SE F   K  + +  Y+++DD G+PTHD  GE + K
Sbjct:  632 ALWKLYDADELKKELERDREAKALKEAKAAEAKAELARKAAEKEAKAKIPPSEMF---KIGEYEGLYSKYDDEGLPTHDKDGEELPK 715
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BLAST of mRNA_Ecto-sp13_S_contig9970.21616.1 vs. uniprot
Match: A0A090M3R1_OSTTA (Cysteinyl-tRNA synthetase/mycothiol ligase (Fragment) n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M3R1_OSTTA)

HSP 1 Score: 53.5 bits (127), Expect = 2.450e-7
Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:   40 ERQQREQEQLRRLEAKAETKRKAAEKEARKKIPASEYFRGLKGDDGKAFYTQFDDNGVPTHDAAGEPIVK 249
            ER+ +E+++  +  AK E  RK  EKEA+ K+P SE F+    ++    Y++F D+GVPTHDA GEP+ K
Sbjct:    2 EREPKEEKERAKAAAKDEAARKXXEKEAKAKVPPSEMFKTF--EEYAGLYSKFGDDGVPTHDAEGEPLQK 69
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BLAST of mRNA_Ecto-sp13_S_contig9970.21616.1 vs. uniprot
Match: A0A1Y1I5L6_KLENI (Cysteine--tRNA ligase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I5L6_KLENI)

HSP 1 Score: 54.7 bits (130), Expect = 1.010e-6
Identity = 31/85 (36.47%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:    1 AVWKLEDPAVLARERQQREQEQ----LRRLEAKAETKRKAAEKEARKKIPASEYFRGLKGDDGKAFYTQFDDNGVPTHDAAGEPI 243
            +VWKL+DP  + +ER  +++       ++LE K ++K+K  EK  +  +P    FR  +   G+  Y+ F+D GVPTHDAAG+ +
Sbjct:  676 SVWKLDDPETMRKERDAKKEAADAAAKQKLERKRDSKKKDIEKWTKASVPPEGLFRNARDAQGQPKYSAFNDEGVPTHDAAGKEL 760
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BLAST of mRNA_Ecto-sp13_S_contig9970.21616.1 vs. uniprot
Match: A0A6U1C2P7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1C2P7_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 3.390e-6
Identity = 40/85 (47.06%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:    7 WKLEDPAVLARERQQREQEQLRRLEAKAET---KRKAAEKEARKK-IPASEYFRGLKGDDGKAFYTQFDDNGVPTHDAAGEPIVK 249
            WKL+DPAVL RE ++R Q QL +  AK E    KR+A  K A+   IP  E     +  D KAF    D+ G+PT DAAGEP+ K
Sbjct:  113 WKLDDPAVLVREIEERRQAQLEQQRAKREKEIGKRRAELKSAQDAAIPPQELLPRTRAADFKAF----DEKGMPTLDAAGEPVAK 193
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BLAST of mRNA_Ecto-sp13_S_contig9970.21616.1 vs. uniprot
Match: M4BXK3_HYAAE (DALR_2 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BXK3_HYAAE)

HSP 1 Score: 52.0 bits (123), Expect = 8.830e-6
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:    1 AVWKLEDPAVLARERQQREQEQLRRLEAKAETKRKAAEKEARKKIPASEYFRGLKGD---DGKAFYTQFDDNGVPTHDAAGEPIVK 249
            AVWKL +   L  E ++++QE+++    K E      E EARKK   +E  + L  D   + K  Y++FDDNG+PTHDAAGEP+ K
Sbjct:  446 AVWKLANKDELLEEIEKKKQEKIK----KEELXXXRLEDEARKKAELAEKAKILPNDMFLELKDKYSKFDDNGLPTHDAAGEPLSK 527
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BLAST of mRNA_Ecto-sp13_S_contig9970.21616.1 vs. uniprot
Match: B7FUX6_PHATC (Cysteine--tRNA ligase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FUX6_PHATC)

HSP 1 Score: 52.0 bits (123), Expect = 8.920e-6
Identity = 33/86 (38.37%), Postives = 46/86 (53.49%), Query Frame = 1 
Query:    1 AVWKLEDPAVLARERQQREQEQLRRLEAKAETKRKAAEKEARKKIPASEYFRGLKGDDGKAF-YTQFDDNGVPTHDAAGEPIVKDK 255
            +VWKL DPA L RE +Q+E E                      ++P  EY R L  +D     Y+QFD++G+PTHDA GEP+ K++
Sbjct:  536 SVWKLADPAELLREMEQKEAEAXXXXXXXXXXXXXXXXXXXLNRLPPVEYMRQLTLEDNVTLMYSQFDEDGIPTHDATGEPVNKNQ 621
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9970.21616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JK68_9PHAE5.590e-4397.65Cysteine--tRNA ligase n=2 Tax=Ectocarpus TaxID=287... [more]
A0A812UK10_SYMMI2.980e-1043.37Cysteine--tRNA ligase n=1 Tax=Symbiodinium microad... [more]
L1K2A7_GUITC6.030e-844.19Cysteine--tRNA ligase n=1 Tax=Guillardia theta (st... [more]
A0A7S0T994_9CHLO7.990e-844.83Hypothetical protein n=2 Tax=Ostreococcus mediterr... [more]
A0A7S0T8V7_9CHLO8.280e-844.83Cysteine--tRNA ligase n=2 Tax=Ostreococcus mediter... [more]
A0A090M3R1_OSTTA2.450e-744.29Cysteinyl-tRNA synthetase/mycothiol ligase (Fragme... [more]
A0A1Y1I5L6_KLENI1.010e-636.47Cysteine--tRNA ligase n=1 Tax=Klebsormidium nitens... [more]
A0A6U1C2P7_9STRA3.390e-647.06Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
M4BXK3_HYAAE8.830e-643.02DALR_2 domain-containing protein n=1 Tax=Hyalopero... [more]
B7FUX6_PHATC8.920e-638.37Cysteine--tRNA ligase n=2 Tax=Phaeodactylum tricor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9970contigEcto-sp13_S_contig9970:158..1972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size255
Hectar predicted targeting categoryother localisation
Exons3
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464256.9109864-CDS-Ecto-sp13_S_contig9970:157..2471681464256.9109864-CDS-Ecto-sp13_S_contig9970:157..247Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9970 158..247 -
1681464256.922744-CDS-Ecto-sp13_S_contig9970:933..10321681464256.922744-CDS-Ecto-sp13_S_contig9970:933..1032Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9970 934..1032 -
1681464256.934784-CDS-Ecto-sp13_S_contig9970:1906..19721681464256.934784-CDS-Ecto-sp13_S_contig9970:1906..1972Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9970 1907..1972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9970.21616.1prot_Ecto-sp13_S_contig9970.21616.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9970 158..1972 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9970.21616.1

>prot_Ecto-sp13_S_contig9970.21616.1 ID=prot_Ecto-sp13_S_contig9970.21616.1|Name=mRNA_Ecto-sp13_S_contig9970.21616.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
AVWKLEDPAVLARERQQREQEQLRRLEAKAETKRKAAEKEARKKIPASEY
FRGLKGDDGKAFYTQFDDNGVPTHDAAGEPIVKDK
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mRNA from alignment at Ecto-sp13_S_contig9970:158..1972-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9970.21616.1 ID=mRNA_Ecto-sp13_S_contig9970.21616.1|Name=mRNA_Ecto-sp13_S_contig9970.21616.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1815bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9970:158..1972- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGTGTGGAAGCTCGAGGACCCGGCCGTGTTGGCAAGAGAGCGACAGCA
GCGGGAACAAGAACAGGTGCGCATGAACGACCTGTTCCCATATCATGTCT
TGCCATGTCTGCGCCTTGCGCCTGTCGCGGACCTACGAATGGGACGGAGT
CGCACATGGTGCACGGCGTTGCATTTTCATTTTTCTTTACATTCTTTGTT
TCTACACCAAACTGCCGCATCAGGGTCTGGCCTGACTCACGCTGTGCGTG
CCTGTAGCGAGCGCGTAGGCAGCAGGACAACATCGTACAAATATTCCGGT
ACCACCCATCTACGGCACATAGCCCACTACGCCATACCCAGGGCCATGGA
AGCTACGTGCGGACTGTTCGCGATGAGTTGAGCATTGTCGCCTTTGTCGG
TGGTCTCCAGGTTTTGTATTTTCTTGGAGCACCTTCCGTCTTTGGCGGCA
GGGCATTGCCGTTGGGGCCACGTCGTCAAGTCATGTTTTCTCTGCGGTGT
GCCAAGTCGGTCGAGGCACGGGAGCGGAACGTGCACAGCTCCTCGCAAGC
CTCTCTCGAGCATGCATTCCAAACCCAAGGAAAATTCCTGTGCGCTCGTT
CTTCAAAGCCAACAAAGATTGTGTGGCTGTTGACGCGCGGAATTGTGTTC
CACGTAACACTACCGTCGCGGCGTTTTTTTCTCTTTGTTCTCGTGACCAC
GGAGATGGCAAGAGAGCGCAACTCCACCAGCTTTGTGTCGATGCCGCCCT
GTTGAACTCAATAGTTGCGCTTTGCTTTGTGGTACCTTTGGTTGGGAGTG
AACTAATTTTGGCGAATACACGAAACATATTCTTCCGACCATCTCACCCA
TCAGGTCATCGCCCGCCCCCCAGCAAACTCACCGCCTTTGATTCGCTCTT
TCTTGTTGTCTTTTGTGAATTCATGCCGAAACGGCATCAGTTGCGCCGCT
TGGAGGCGAAGGCAGAGACGAAGAGGAAGGCGGCAGAGAAGGAGGCAAGG
AAAAAGATCCCCGCCAGCGAATACTTCCGGGGATTGAAGGTGCTGTGTGG
CATTGTAAACCAAGAAGAAAGAGGCACCTCGGGCTGTCCGGGGCCTGTCA
GCGTCGGTCTCTCAGATAACCAGGGCGCGGAGCGATCATCATGCGCTGGT
TTCCATAGCACGCTCGTTGTAGCCCCAAGTGCCGATTTTTTTTTTCCCCG
ACTTTTGAGATGCGGTATCATCTCTCACCCCCCCCGTTTTTTGTGTTCCG
CGGTGTGTCCCGCTCGTGCCGCGACTTACCCGCTGTACCACATGGCCACG
AGACTTTGTGTCGTCGCAGTTCGGGTGTGTTGTTGCAACCCGATGACCCT
CGCGCGTCTCCCAGCCGATTTTCTGACGGTTGGGCTGGCGTTGTTTTCGA
GACACGCAAATTGGCGGGATTTTGGGTTGAGTTGATCAGCAGAAAAGCAC
GGCTAAGATTCGGCCGCATTCGAAGTTGGCGCAATTCGTCCACGTAGCTC
TTCCCGATTGGTATGGGCTGACGAGCCGAGCGAAGTTAATCAAATGGATT
GATCGAAAAGCCATCATCCCAGGCCGAGCGAGGTCTGTATCTCGATGGTC
CTATGACATGGGCATTTGTTTGTGCGCGCCCATAATCTTTGTCTTGTTTT
ACGTGATTCCCCTCCTTTTTTTTTTTTTTGCTCGTCGCCTCGTGCTCGGG
TTGTGCCTCTTGTTCGTCCGCCCAGGGCGACGACGGGAAGGCGTTTTATA
CCCAGTTCGACGACAACGGGGTCCCCACGCACGACGCTGCCGGAGAACCG
ATCGTCAAGGACAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9970:158..1972-

>mRNA_Ecto-sp13_S_contig9970.21616.1 ID=mRNA_Ecto-sp13_S_contig9970.21616.1|Name=mRNA_Ecto-sp13_S_contig9970.21616.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9970:158..1972- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGTGTGGAAGCTCGAGGACCCGGCCGTGTTGGCAAGAGAGCGACAGCA
GCGGGAACAAGAACAGTTGCGCCGCTTGGAGGCGAAGGCAGAGACGAAGA
GGAAGGCGGCAGAGAAGGAGGCAAGGAAAAAGATCCCCGCCAGCGAATAC
TTCCGGGGATTGAAGGGCGACGACGGGAAGGCGTTTTATACCCAGTTCGA
CGACAACGGGGTCCCCACGCACGACGCTGCCGGAGAACCGATCGTCAAGG
ACAAG
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