mRNA_Ecto-sp13_S_contig9967.21612.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9967.21612.1
Unique NamemRNA_Ecto-sp13_S_contig9967.21612.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9967.21612.1 vs. uniprot
Match: A0A6H5JWS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS9_9PHAE)

HSP 1 Score: 495 bits (1275), Expect = 7.660e-175
Identity = 264/287 (91.99%), Postives = 273/287 (95.12%), Query Frame = 1
Query:   76 MGKACALIMAVVGSCAMGVTSCFVIFAPGQSCPSVAASSPAVAVRATTCKRRQHHLQAKRKKSDRGRPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAIPCTSVLTGQGPDAVDEVEIDFSPLRTSRDVMDSLFEQADAVAAELEAPLVELELELAGGAEDAGETTADAAASFAGESAQRDQENAGTEKAIEDDELGEGVEEEEEWTGDPNNRPIWKFPVVSRVYRCDSRKQAKDVAVALASVR 936
            MGKACA I+AVVGSCAMG+TSCFVIF PGQSCPSVAASSPAVAVRATTCKR          KSDRGRPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAIPCTSVLTGQGPDAVDEVEIDFSPLRTSR+VMDSLFEQADAVAAELEAP VELELELAGGAE+AGETTADAAASFAGESAQR+Q++AGTEKA EDDELGEGVEEEEEWTGDPNNRPIWKFPVVSRVYRC+SRKQAKDVAVAL+SVR
Sbjct:    1 MGKACAFIVAVVGSCAMGITSCFVIFTPGQSCPSVAASSPAVAVRATTCKRXXXXXXXXXXKSDRGRPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAIPCTSVLTGQGPDAVDEVEIDFSPLRTSREVMDSLFEQADAVAAELEAPWVELELELAGGAEEAGETTADAAASFAGESAQRNQDDAGTEKAKEDDELGEGVEEEEEWTGDPNNRPIWKFPVVSRVYRCNSRKQAKDVAVALSSVR 287          
BLAST of mRNA_Ecto-sp13_S_contig9967.21612.1 vs. uniprot
Match: D7FPZ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPZ2_ECTSI)

HSP 1 Score: 368 bits (945), Expect = 1.530e-125
Identity = 211/287 (73.52%), Postives = 214/287 (74.56%), Query Frame = 1
Query:   76 MGKACALIMAVVGSCAMGVTSCFVIFAPGQSCPSVAASSPAVAVRATTCKRRQHHLQAKRKKSDRGRPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAIPCTSVLTGQGPDAVDEVEIDFSPLRTSRDVMDSLFEQADAVAAELEAPLVELELELAGGAEDAGETTADAAASFAGESAQRDQENAGTEKAIEDDELGEGVEEEEEWTGDPNNRPIWKFPVVSRVYRCDSRKQAKDVAVALASVR 936
            MGKAC  IMAVVGSCAMGVTSCFVIF PGQSCPSVAASSPAVAVRATTCKR          KSDRGRPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKA+PCTSVLTGQGPDAVDEVEIDFSPLRTSR+VMDSL EQADAVAAELEAP VELELELAGGAEDAGET                                                          VYRCDSRKQAKDVAVAL+SVR
Sbjct:    1 MGKACVFIMAVVGSCAMGVTSCFVIFTPGQSCPSVAASSPAVAVRATTCKRXXXXXXXXXXKSDRGRPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAMPCTSVLTGQGPDAVDEVEIDFSPLRTSREVMDSLSEQADAVAAELEAPRVELELELAGGAEDAGET----------------------------------------------------------VYRCDSRKQAKDVAVALSSVR 229          
BLAST of mRNA_Ecto-sp13_S_contig9967.21612.1 vs. uniprot
Match: A0A4D9CX39_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CX39_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.550e-44
Identity = 113/236 (47.88%), Postives = 138/236 (58.47%), Query Frame = 1
Query:  238 HLQAKRKKSD--------RGRPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAIPCTSVLTGQGPDAVDEVEIDFSPLRTSRDV-MDSLFEQADAVAAELEAPLVELELELAGGAEDAGETTADAAASFAGESAQRDQENAGTEKAIEDDELGEGVEEEEEWTGDPNNRPIWKFPVVSRVYRCDS-RKQAKDVA 915
            HL ++  +SD        +GRPSLDDVERLS GQAAKKRGTGSR +CHRLNE ERK +DLAKK G+V LRGTGYRRERKGSPL NI RQ CDA   PC  V  G G DAVDEV +D SP R  + V +DS +E   A+  E  +         A      G+ TA+A++    E ++     A  E+  E         EEE+W      +PIW+ PV++ VY C   R  AK VA
Sbjct:   67 HLPSQHARSDLLRRHAYAKGRPSLDDVERLSHGQAAKKRGTGSRNICHRLNEMERKEFDLAKKMGFVQLRGTGYRRERKGSPLANIHRQLCDALGRPCIEVHRGLGTDAVDEVVVDLSPYRPVQPVELDSAWEVCVALEEEFLSAA-------ASAVSQEGDGTANASSLGEQEGSKVPSLRAKWERMRESF-------EEEDW----EKKPIWELPVLAYVYNCTGDRGLAKKVA 284          
BLAST of mRNA_Ecto-sp13_S_contig9967.21612.1 vs. uniprot
Match: W7TT87_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TT87_9STRA)

HSP 1 Score: 163 bits (412), Expect = 2.050e-43
Identity = 109/225 (48.44%), Postives = 133/225 (59.11%), Query Frame = 1
Query:  238 HLQAKRKKSD--------RGRPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAIPCTSVLTGQGPDAVDEVEIDFSPLRTSRDV-MDSLFEQADAVAAELEAPLVELELELAGGAEDAGETTADAAASFAGESAQRDQENAGTEKAIEDDELGEGVEEEEEWTGDPNNRPIWKFPVVSRVYRC 885
            HL ++  +SD        +GRPSLDDVERLS GQAAKKRGTGSR +CHRLNE ERK +DLAKK G+V LRGTGYRRERKGSPL NI RQ CDA   PC  V  G G DAVDEV +D SP R  + V +DS +E   A+  E         L  A  A    + TA+A++    E ++     A  E+  E         EEE+W      +PIW+ PV++ VY C
Sbjct:   67 HLPSQHARSDLLRRHAYAKGRPSLDDVERLSHGQAAKKRGTGSRNICHRLNEMERKEFDLAKKMGFVQLRGTGYRRERKGSPLANIHRQLCDALGRPCIEVHRGLGTDAVDEVVVDLSPYRPVQPVELDSAWEVCVALEEEF--------LSAAASAVSQEDGTANASSLGEQEGSEVPSLRAKWERMRESF-------EEEDW----EKKPIWELPVLAYVYNC 272          
BLAST of mRNA_Ecto-sp13_S_contig9967.21612.1 vs. uniprot
Match: A0A836CH55_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH55_9STRA)

HSP 1 Score: 157 bits (398), Expect = 1.900e-42
Identity = 83/128 (64.84%), Postives = 99/128 (77.34%), Query Frame = 1
Query:  271 GRPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAIPCTSVLTGQGPDAVDEVEIDFSPLRTSRDVMDSLFEQADAVAAELEAPLVE 654
            GRPSLDDVER+S G+AAKKRGTGSRGVCHRLN  ER  ++LAKK+GY+VLRGTGYR+ERKGSPL NIFRQ+CDAKA+P  S+    G +AVDEV +D SPLR     +D +  + DA+A E  A  VE
Sbjct:   68 GRPSLDDVERISFGKAAKKRGTGSRGVCHRLNADERAEWELAKKRGYLVLRGTGYRKERKGSPLGNIFRQYCDAKAVPFVSLEQAVGINAVDEVHVDLSPLRQRE--LDDVKREIDALAMEFGASRVE 193          
BLAST of mRNA_Ecto-sp13_S_contig9967.21612.1 vs. uniprot
Match: A0A0G4EX23_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EX23_VITBC)

HSP 1 Score: 135 bits (340), Expect = 5.600e-34
Identity = 74/132 (56.06%), Postives = 93/132 (70.45%), Query Frame = 1
Query:  271 GRPSLDDVERLSRGQAAKK--RGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAIPCTSVLTGQGPDAVDEVEIDFSPLR--TSRDVMDSLFEQADAVAAELEAPLVE 654
            GR +LDDVER+SRGQAA+K  RGTGSR V HRLN+ ERK YD+AK + Y+V  G+ YRRERKGSPL NI+RQ+CDA+A PC ++  G GP+  D V +D SPLR   S  VM  L E   ++ + L   +VE
Sbjct:   72 GRAALDDVERISRGQAARKKRRGTGSRNVPHRLNQEERKLYDIAKGRRYLVTSGSAYRRERKGSPLANIYRQWCDAQATPCINIQKGLGPEGSDLVVVDLSPLRRPASHPVMQQLLESLCSLLSSLGCTVVE 203          
BLAST of mRNA_Ecto-sp13_S_contig9967.21612.1 vs. uniprot
Match: A0A7S1BHJ3_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BHJ3_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.820e-29
Identity = 65/105 (61.90%), Postives = 74/105 (70.48%), Query Frame = 1
Query:  274 RPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAIPCTSVLTGQGPDAVDEVEIDFSPLRTSRD 588
            RP+LDDVERLS G   +KRGTGS+ VCHRLN+ ERK YDLAKK GY+ +RGTGYR++RKGSPL N FRQ CDA   PC  V   +  D    V IDFS LR   D
Sbjct:    7 RPNLDDVERLSYGNGTRKRGTGSKYVCHRLNQEERKLYDLAKKAGYLSIRGTGYRKQRKGSPLCNTFRQRCDALEKPCLIVEKRKDGD---RVLIDFSTLRVKDD 108          
BLAST of mRNA_Ecto-sp13_S_contig9967.21612.1 vs. uniprot
Match: A0A2P6TIU8_CHLSO (Phosphate transporter n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TIU8_CHLSO)

HSP 1 Score: 125 bits (314), Expect = 5.090e-28
Identity = 64/101 (63.37%), Postives = 79/101 (78.22%), Query Frame = 1
Query:  274 RPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAIPCTSVLTGQGPDAVDEVEIDFSPLR 576
            RPSLDDV+R+S G AAK RGTGSR V HRLN  ERKAYDLAK++G++ + G+GYRRERKGSPL NI+RQ+CDA+  P  +VL  +GP   D V +D+S LR
Sbjct:  563 RPSLDDVQRISTGDAAKHRGTGSRAVPHRLNAEERKAYDLAKQKGFLTIAGSGYRRERKGSPLANIWRQWCDAQGRP--AVLLTKGPTGEDAVLVDYSTLR 661          
BLAST of mRNA_Ecto-sp13_S_contig9967.21612.1 vs. uniprot
Match: A0A7S2E7L9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E7L9_9STRA)

HSP 1 Score: 115 bits (288), Expect = 5.680e-27
Identity = 67/106 (63.21%), Postives = 75/106 (70.75%), Query Frame = 1
Query:  274 RPSLDDVERLSRGQAAKK-RGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAIPCTSVLTGQGPDAVDEVEIDFSPLRTSRD 588
            RP LDDVERLS GQ AKK RGTGSR VCHRLN  ERK YDLAK+ GY+ +RGTGYR+ERKGSP+ N FRQ CDA    C  V+  +  D  D + IDFS LR   D
Sbjct:    7 RPFLDDVERLSYGQGAKKQRGTGSRFVCHRLNRDERKLYDLAKQAGYLTVRGTGYRKERKGSPVCNTFRQRCDALEEIC--VIVEKRADT-DTLIIDFSTLRVRDD 109          
BLAST of mRNA_Ecto-sp13_S_contig9967.21612.1 vs. uniprot
Match: A0A7S2BKI8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BKI8_9STRA)

HSP 1 Score: 117 bits (293), Expect = 6.700e-27
Identity = 56/104 (53.85%), Postives = 80/104 (76.92%), Query Frame = 1
Query:  274 RPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESERKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAIPCTSVLTGQGPDAVDEVEIDFSPLRTSR 585
            RP+LDDVER+S G+ AKK+GTGSRGV HRLN+ ERK+YD+A+++G++ + G+G+R+ER+G+PL N +R +CDA A+P   V    G D  D V +D SPLR ++
Sbjct:   41 RPTLDDVERISWGKPAKKKGTGSRGVPHRLNDDERKSYDIARRKGFLEVAGSGWRKERRGTPLLNTYRLWCDASAVPAIFVQKSAGGDE-DGVSVDLSPLRMTK 143          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9967.21612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWS9_9PHAE7.660e-17591.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPZ2_ECTSI1.530e-12573.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4D9CX39_9STRA1.550e-4447.88Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TT87_9STRA2.050e-4348.44Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A836CH55_9STRA1.900e-4264.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0G4EX23_VITBC5.600e-3456.06Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S1BHJ3_9STRA2.820e-2961.90Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A2P6TIU8_CHLSO5.090e-2863.37Phosphate transporter n=1 Tax=Chlorella sorokinian... [more]
A0A7S2E7L9_9STRA5.680e-2763.21Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A7S2BKI8_9STRA6.700e-2753.85Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9967contigEcto-sp13_S_contig9967:1469..4087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score369.0
Seed ortholog evalue2e-99
Seed eggNOG ortholog2880.D7FPZ2
Model size1038
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG OGs2C7ID@1,2S2CN@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_008110.2
Cds size864
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9967.21612.1prot_Ecto-sp13_S_contig9967.21612.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9967 1544..3988 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464256.2898312-UTR-Ecto-sp13_S_contig9967:1468..15431681464256.2898312-UTR-Ecto-sp13_S_contig9967:1468..1543Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9967 1469..1543 +
1681464256.377824-UTR-Ecto-sp13_S_contig9967:3988..40871681464256.377824-UTR-Ecto-sp13_S_contig9967:3988..4087Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9967 3989..4087 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464256.30425-CDS-Ecto-sp13_S_contig9967:1543..18491681464256.30425-CDS-Ecto-sp13_S_contig9967:1543..1849Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9967 1544..1849 +
1681464256.3162665-CDS-Ecto-sp13_S_contig9967:2113..22541681464256.3162665-CDS-Ecto-sp13_S_contig9967:2113..2254Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9967 2114..2254 +
1681464256.331344-CDS-Ecto-sp13_S_contig9967:2705..28821681464256.331344-CDS-Ecto-sp13_S_contig9967:2705..2882Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9967 2706..2882 +
1681464256.349647-CDS-Ecto-sp13_S_contig9967:3265..34391681464256.349647-CDS-Ecto-sp13_S_contig9967:3265..3439Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9967 3266..3439 +
1681464256.3660176-CDS-Ecto-sp13_S_contig9967:3922..39881681464256.3660176-CDS-Ecto-sp13_S_contig9967:3922..3988Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9967 3923..3988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9967.21612.1

>prot_Ecto-sp13_S_contig9967.21612.1 ID=prot_Ecto-sp13_S_contig9967.21612.1|Name=mRNA_Ecto-sp13_S_contig9967.21612.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=288bp
MGKACALIMAVVGSCAMGVTSCFVIFAPGQSCPSVAASSPAVAVRATTCK
RRQHHLQAKRKKSDRGRPSLDDVERLSRGQAAKKRGTGSRGVCHRLNESE
RKAYDLAKKQGYVVLRGTGYRRERKGSPLQNIFRQFCDAKAIPCTSVLTG
QGPDAVDEVEIDFSPLRTSRDVMDSLFEQADAVAAELEAPLVELELELAG
GAEDAGETTADAAASFAGESAQRDQENAGTEKAIEDDELGEGVEEEEEWT
GDPNNRPIWKFPVVSRVYRCDSRKQAKDVAVALASVR*
back to top

mRNA from alignment at Ecto-sp13_S_contig9967:1469..4087+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9967.21612.1 ID=mRNA_Ecto-sp13_S_contig9967.21612.1|Name=mRNA_Ecto-sp13_S_contig9967.21612.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2619bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9967:1469..4087+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATCTCTGCGTCCCTGCCTCACGCGCACACCAAACCCAGCCCCGTCAATC TCCCTCTTGCAGTCGCTGGAGCCTCATGGGGAAAGCTTGTGCTTTAATCA TGGCCGTTGTGGGTAGCTGTGCCATGGGTGTCACGTCCTGCTTCGTGATT TTCGCACCTGGACAATCATGTCCCTCTGTCGCCGCTAGTTCCCCCGCTGT CGCTGTTCGCGCCACAACCTGCAAACGACGTCAACATCACCTTCAGGCGA AAAGGAAAAAGTCCGACCGTGGCAGACCCTCGCTAGACGATGTAGAGCGG TTGTCGAGAGGCCAGGCTGCCAAAAAACGGGGAACGGGGAGCCGAGGTGT CTGCCACCGTCTGAATGAGTCAGAGCGAAAGGTAGGTGTGGAAGTCTAGA CTACTGTGTACAACACCATGCTGCTGTTGCATAGCTCTCGTGTATTCATG TTTATAGGAGAAACGCGTCGAAGTACGTTTATGTTGAGAATCTTAGTGCT TGCTAAGTCGGGTCTATGTGTGGCTGTAGGTTGTCACCGAAGAATCAAGA ATGCAAGTGATGTTCTCCGTTACATCCAAACTAATGCTGCTGCACATGTG TTTCCGCGCTTTGTACTACTGCACGTCTTCAATCTACCTTTTTAGGCGTA CGATCTGGCCAAGAAACAAGGCTACGTCGTTCTAAGGGGCACGGGCTATC GAAGGGAGCGCAAGGGTAGCCCTCTTCAAAACATCTTCAGGCAGTTTTGC GACGCGAAAGCCATACCTTGCACAAGCGTTTTAACGGTGAGCAGAATCAA TCGCAGACGCTAGGCCCTTACCCTCACCTCCAGAAAGAACGGATTAGTTT GTCCTCTTCAGAACGTTCGTGTAGCGGCACAACCAACCGGTTTGTTCTTG TTTCTGTACGGAGGCCCTGCCCGTCGGAAGTGCGTGCACACGCGTGAGGT ACAGCAGAAATGTACTCCAGTACAAATTTTGGGCGAGGTTTGGGGCAAAC GCTGAAGCCTAGACGCTGGCCTCCATGCCCGTTTGAGACGTGCCGAGCGA GCGGGCTGCTACAGTCTTCACCGAGGGAAAATACAGGAACACAACCAACC CAACCGTGTCCGTTCGTGGGCGGAACAACCACATAACACCTCGTCCTGGT GCGACACAGGGATAAATACACGAGTGCCCTCCGTCCCTCGCTCCGCGACC TCATACCAAAAATGTAACGCCCACGTTTTGTAAACAGGGCCAGGGGCCTG ATGCCGTGGACGAGGTGGAGATTGATTTCTCTCCCCTTAGAACTTCTCGG GATGTGATGGACTCTCTGTTCGAGCAAGCGGATGCAGTTGCCGCCGAACT CGAGGCGCCACTGGTGGAGTTGGAGTTAGAGTTGGCCGGAGGAGCGGAAG ACGCCGGCGAGACGGTGGGATATTGTTGGTTGTTGGTTGTTGTCGTTGAT GCTGTTGTCTTTGATTGTTGTGGTAGTGGTTGTCGTCTTTGCATTTGCAA TGATTGCGGTGGTTCAGGGCCCACAAGCGTGAGTGTACGGCCATCTCGTG GGCGAAACCACATGCGTTAGCCGATACCAACGTTGAGAATGTTTTGTAGT ATTTGGGGCAAGTGCAAGGGTACAGTCGTGGGCGTAAGAGCATCGACAAT ACATCGCGATACGTAGAGTAGTTCAACCTACTGCCGGAATGGGCACTCAT GCTTAGGGGGAATGGTTCGTTTCTAAGCGTATAAATAGACAACATGGTTA CGAGAAGGCTGACCTTGTTTCTTGTGCCACGACGACATTCCCAACAGACT GCCGACGCCGCCGCCTCTTTCGCGGGGGAATCGGCACAACGCGATCAAGA GAATGCCGGAACGGAAAAGGCAATAGAAGACGACGAGCTAGGAGAAGGCG TGGAGGAAGAGGAAGAGTGGACAGGAGATCCGAACAACCGGCCGATATGG AAGTTCCCCGTGGTCTCCCGGGTAAGGAAGCTGGGGCCTCCGTCCTTTCT CGCCCCGACGCTCGCGTCCGCACGCACGTCCGCGCGTGACAGCATTGGCG GAAGCTGAAAACATCTATCGATATATCCCTCAACTCCTTCTCGAGTCTCG CAGTCGAATGGGTTTGGTAGCATGTTGCGTGATAAGGCGAGGATCAGAAA GGCTGCGCGCAGTGAACGAACGAGGAGCACCTTTCGCACCCCCTCTCTTC TCCCGGGGACTTAATAAAGAAGAGATGTTGATGCACCGGGAGTTCTGGCG TACGCATTGCGGTGGAGAGGACAGCACCGTCCCCAAAGTGTCGTGCTACC GTTATCGCCCAGACTAGTACAGCCCTTTATCGGCAAATAAACAACCAGGA TGTGGTCTCAATCAACAGCAGTCGTTCACATCAAGCTATCTCTTCTCTCC TACTACAGCGTATAGCTTGATGTGCCCAATCGCACCCACCCGTCTCTGCC GCAGGTGTATCGGTGCGACTCCCGAAAGCAGGCGAAGGACGTGGCGGTGG CACTGGCGTCTGTACGGTAGACTGAGACTCGTACCTTGGGCCTATGCAGT TTTTTAGCGATGATGTGTGTCTTCTTCCGTCTTAGTTGCAGTGGAGAGAT GCATCACCTGTTGTTACGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9967:1469..4087+

>mRNA_Ecto-sp13_S_contig9967.21612.1 ID=mRNA_Ecto-sp13_S_contig9967.21612.1|Name=mRNA_Ecto-sp13_S_contig9967.21612.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=864bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9967:1469..4087+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGAAAGCTTGTGCTTTAATCATGGCCGTTGTGGGTAGCTGTGCCAT
GGGTGTCACGTCCTGCTTCGTGATTTTCGCACCTGGACAATCATGTCCCT
CTGTCGCCGCTAGTTCCCCCGCTGTCGCTGTTCGCGCCACAACCTGCAAA
CGACGTCAACATCACCTTCAGGCGAAAAGGAAAAAGTCCGACCGTGGCAG
ACCCTCGCTAGACGATGTAGAGCGGTTGTCGAGAGGCCAGGCTGCCAAAA
AACGGGGAACGGGGAGCCGAGGTGTCTGCCACCGTCTGAATGAGTCAGAG
CGAAAGGCGTACGATCTGGCCAAGAAACAAGGCTACGTCGTTCTAAGGGG
CACGGGCTATCGAAGGGAGCGCAAGGGTAGCCCTCTTCAAAACATCTTCA
GGCAGTTTTGCGACGCGAAAGCCATACCTTGCACAAGCGTTTTAACGGGC
CAGGGGCCTGATGCCGTGGACGAGGTGGAGATTGATTTCTCTCCCCTTAG
AACTTCTCGGGATGTGATGGACTCTCTGTTCGAGCAAGCGGATGCAGTTG
CCGCCGAACTCGAGGCGCCACTGGTGGAGTTGGAGTTAGAGTTGGCCGGA
GGAGCGGAAGACGCCGGCGAGACGACTGCCGACGCCGCCGCCTCTTTCGC
GGGGGAATCGGCACAACGCGATCAAGAGAATGCCGGAACGGAAAAGGCAA
TAGAAGACGACGAGCTAGGAGAAGGCGTGGAGGAAGAGGAAGAGTGGACA
GGAGATCCGAACAACCGGCCGATATGGAAGTTCCCCGTGGTCTCCCGGGT
GTATCGGTGCGACTCCCGAAAGCAGGCGAAGGACGTGGCGGTGGCACTGG
CGTCTGTACGGTAG
back to top