mRNA_Ecto-sp13_S_contig99373.21585.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig99373.21585.1
Unique NamemRNA_Ecto-sp13_S_contig99373.21585.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig99373.21585.1 vs. uniprot
Match: A0A6H5K166_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K166_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 5.420e-19
Identity = 40/44 (90.91%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:   22 KKVSYTSWFLDAFNYALFLGVDIINLSIGGPDFKDQPFVDKVQQ 153
            ++VSYTSWFLDAFNYALFLGVDIINLSIGGPDFKDQPFVDKV++
Sbjct:  761 QQVSYTSWFLDAFNYALFLGVDIINLSIGGPDFKDQPFVDKVRE 804
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BLAST of mRNA_Ecto-sp13_S_contig99373.21585.1 vs. uniprot
Match: D7FUM0_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUM0_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 7.400e-19
Identity = 39/44 (88.64%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:   22 KKVSYTSWFLDAFNYALFLGVDIINLSIGGPDFKDQPFVDKVQQ 153
            ++VSYTSWFLDAFNYALFLGVDI+NLSIGGPDFKDQPFVDKV++
Sbjct:  486 EQVSYTSWFLDAFNYALFLGVDIVNLSIGGPDFKDQPFVDKVRE 529
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BLAST of mRNA_Ecto-sp13_S_contig99373.21585.1 vs. uniprot
Match: A0A7S1XRI8_9STRA (Subtilisin n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRI8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.800e-15
Identity = 34/44 (77.27%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:   22 KKVSYTSWFLDAFNYALFLGVDIINLSIGGPDFKDQPFVDKVQQ 153
            +++SYTSWFLDAFNYALFL VD++NLSIGGPDF DQPF DKV +
Sbjct:  132 QQMSYTSWFLDAFNYALFLQVDVLNLSIGGPDFLDQPFADKVHE 175
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BLAST of mRNA_Ecto-sp13_S_contig99373.21585.1 vs. uniprot
Match: A0A336MN80_CULSO (CSON001589 protein n=1 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336MN80_CULSO)

HSP 1 Score: 77.0 bits (188), Expect = 3.350e-15
Identity = 33/44 (75.00%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:   22 KKVSYTSWFLDAFNYALFLGVDIINLSIGGPDFKDQPFVDKVQQ 153
             +VSYTSWFLDAFNYA+F G++I+NLSIGGPDF D+PFV+KVQ+
Sbjct:  247 NQVSYTSWFLDAFNYAIFKGINILNLSIGGPDFLDKPFVEKVQE 290
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BLAST of mRNA_Ecto-sp13_S_contig99373.21585.1 vs. uniprot
Match: A0A336LTD3_CULSO (CSON004411 protein n=1 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336LTD3_CULSO)

HSP 1 Score: 77.0 bits (188), Expect = 3.350e-15
Identity = 33/44 (75.00%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:   22 KKVSYTSWFLDAFNYALFLGVDIINLSIGGPDFKDQPFVDKVQQ 153
             +VSYTSWFLDAFNYA+F G++I+NLSIGGPDF D+PFV+KVQ+
Sbjct:  576 NQVSYTSWFLDAFNYAIFKGINILNLSIGGPDFLDKPFVEKVQE 619
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BLAST of mRNA_Ecto-sp13_S_contig99373.21585.1 vs. uniprot
Match: T2MD49_HYDVU (Membrane-bound transcription factor site-1 protease n=3 Tax=Hydra vulgaris TaxID=6087 RepID=T2MD49_HYDVU)

HSP 1 Score: 75.5 bits (184), Expect = 1.170e-14
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:   22 KKVSYTSWFLDAFNYALFLGVDIINLSIGGPDFKDQPFVDKV 147
            K+VSYTSWFLDAFNYA+   +DI+NLSIGGPDF D+PFVDKV
Sbjct:  250 KQVSYTSWFLDAFNYAILKNIDILNLSIGGPDFMDKPFVDKV 291
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BLAST of mRNA_Ecto-sp13_S_contig99373.21585.1 vs. uniprot
Match: A0A5D6XLG2_9STRA (Subtilisin n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLG2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.170e-14
Identity = 31/44 (70.45%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:   22 KKVSYTSWFLDAFNYALFLGVDIINLSIGGPDFKDQPFVDKVQQ 153
            +++S+TSWFLDAFNYALF GV ++NLS GGPDF+D+PFVDK+Q+
Sbjct:  268 EQLSFTSWFLDAFNYALFQGVHVLNLSTGGPDFRDRPFVDKIQE 311
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BLAST of mRNA_Ecto-sp13_S_contig99373.21585.1 vs. uniprot
Match: R7QB87_CHOCR (Peptidase_S8 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QB87_CHOCR)

HSP 1 Score: 75.5 bits (184), Expect = 1.170e-14
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:   25 KVSYTSWFLDAFNYALFLGVDIINLSIGGPDFKDQPFVDKVQQ 153
            +VSYTSWFLDAFNYAL +G+D++NLSIGGPDF D PF DKV +
Sbjct:  226 QVSYTSWFLDAFNYALHVGIDVLNLSIGGPDFADSPFTDKVNE 268
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BLAST of mRNA_Ecto-sp13_S_contig99373.21585.1 vs. uniprot
Match: A0A7S0WN64_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WN64_9CHLO)

HSP 1 Score: 74.7 bits (182), Expect = 2.180e-14
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:   25 KVSYTSWFLDAFNYALFLGVDIINLSIGGPDFKDQPFVDKV 147
            +VS+TSWFLDAFNYAL  GV IINLSIGGPDF DQPFVDKV
Sbjct:   82 QVSFTSWFLDAFNYALISGVQIINLSIGGPDFLDQPFVDKV 122
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BLAST of mRNA_Ecto-sp13_S_contig99373.21585.1 vs. uniprot
Match: UPI0006C9A9DE (membrane-bound transcription factor site-1 protease isoform X1 n=2 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI0006C9A9DE)

HSP 1 Score: 74.7 bits (182), Expect = 2.180e-14
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:   22 KKVSYTSWFLDAFNYALFLGVDIINLSIGGPDFKDQPFVDKV 147
             K+SYTSWFLDAFNYA+ L + I+NLSIGGPDF DQPFVDKV
Sbjct:  258 SKISYTSWFLDAFNYAMLLKIKILNLSIGGPDFLDQPFVDKV 299
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig99373.21585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K166_9PHAE5.420e-1990.91Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
D7FUM0_ECTSI7.400e-1988.64Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A7S1XRI8_9STRA1.800e-1577.27Subtilisin n=2 Tax=Phaeomonas parva TaxID=124430 R... [more]
A0A336MN80_CULSO3.350e-1575.00CSON001589 protein n=1 Tax=Culicoides sonorensis T... [more]
A0A336LTD3_CULSO3.350e-1575.00CSON004411 protein n=1 Tax=Culicoides sonorensis T... [more]
T2MD49_HYDVU1.170e-1478.57Membrane-bound transcription factor site-1 proteas... [more]
A0A5D6XLG2_9STRA1.170e-1470.45Subtilisin n=1 Tax=Pythium brassicum TaxID=1485010... [more]
R7QB87_CHOCR1.170e-1474.42Peptidase_S8 domain-containing protein n=1 Tax=Cho... [more]
A0A7S0WN64_9CHLO2.180e-1485.37Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
UPI0006C9A9DE2.180e-1478.57membrane-bound transcription factor site-1 proteas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig99373contigEcto-sp13_S_contig99373:2..154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score88.2
Seed ortholog evalue1.2e-15
Seed eggNOG ortholog2880.D7FUM0
Preferred nameMBTPS1
Model size153
KEGG koko:K08653
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000139,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0004252,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005789,GO:0005794,GO:0005795,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006606,GO:0006629,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006970,GO:0006972,GO:0006984,GO:0006986,GO:0006991,GO:0006996,GO:0007033,GO:0007040,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008237,GO:0009628,GO:0009651,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016485,GO:0016787,GO:0017038,GO:0017171,GO:0019216,GO:0019218,GO:0019219,GO:0019222,GO:0019538,GO:0023052,GO:0030968,GO:0031090,GO:0031293,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031984,GO:0032933,GO:0033036,GO:0033365,GO:0033554,GO:0033619,GO:0034504,GO:0034613,GO:0034620,GO:0034976,GO:0035103,GO:0035966,GO:0035967,GO:0036211,GO:0036500,GO:0042175,GO:0042221,GO:0042538,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045540,GO:0045893,GO:0045935,GO:0045944,GO:0046890,GO:0046907,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050810,GO:0050896,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051254,GO:0051604,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0062012,GO:0065007,GO:0070011,GO:0070013,GO:0070727,GO:0070887,GO:0071310,GO:0071501,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0080171,GO:0090181,GO:0098588,GO:0098791,GO:0098827,GO:0106118,GO:0140096,GO:1901564,GO:1902680,GO:1902930,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsCOG1404@1,KOG4266@2759
EC3.4.21.112
Cds size153
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464254.2322178-CDS-Ecto-sp13_S_contig99373:1..1541681464254.2322178-CDS-Ecto-sp13_S_contig99373:1..154Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig99373 2..154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig99373.21585.1prot_Ecto-sp13_S_contig99373.21585.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig99373 2..154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig99373.21585.1

>prot_Ecto-sp13_S_contig99373.21585.1 ID=prot_Ecto-sp13_S_contig99373.21585.1|Name=mRNA_Ecto-sp13_S_contig99373.21585.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
MSGCDFVKKVSYTSWFLDAFNYALFLGVDIINLSIGGPDFKDQPFVDKVQ
Q
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mRNA from alignment at Ecto-sp13_S_contig99373:2..154-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig99373.21585.1 ID=mRNA_Ecto-sp13_S_contig99373.21585.1|Name=mRNA_Ecto-sp13_S_contig99373.21585.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig99373:2..154- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTGGTTGCGATTTCGTGAAAAAGGTATCGTACACCTCCTGGTTCCT
AGACGCGTTCAACTACGCGCTCTTCCTCGGCGTCGATATAATCAACCTGA
GCATTGGTGGTCCGGACTTCAAGGATCAGCCCTTCGTGGACAAGGTACAG
CAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig99373:2..154-

>mRNA_Ecto-sp13_S_contig99373.21585.1 ID=mRNA_Ecto-sp13_S_contig99373.21585.1|Name=mRNA_Ecto-sp13_S_contig99373.21585.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig99373:2..154- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTGGTTGCGATTTCGTGAAAAAGGTATCGTACACCTCCTGGTTCCT
AGACGCGTTCAACTACGCGCTCTTCCTCGGCGTCGATATAATCAACCTGA
GCATTGGTGGTCCGGACTTCAAGGATCAGCCCTTCGTGGACAAGGTACAG
CAG
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