mRNA_Ecto-sp13_S_contig9933.21581.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9933.21581.1
Unique NamemRNA_Ecto-sp13_S_contig9933.21581.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9933.21581.1 vs. uniprot
Match: D7FJH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJH1_ECTSI)

HSP 1 Score: 362 bits (928), Expect = 1.360e-117
Identity = 181/193 (93.78%), Postives = 189/193 (97.93%), Query Frame = 1 
Query:    1 VNATSELIVVAEPEQGEDCDVGGGIPLEISSMPVTTSYVDIPASIFFQGSMRNMTNKYTSLSISLPVTGAHLVVVLLESGGTLGTLDVASIPGEPYAPNSIVSSKPPTSMVQHSSANVSFSCRDFYSNDITFGYGDDAFQAWMSTSSQQLSERVSDVGNGSYAVELSTHNESETTLFFVQRDKLNIPGSPFEV 579
            VNATS+LIVVAEPEQGEDCDVG GIPLEISSMPVTTSYV+IPASIFFQGSM+N+TNKYTSLSI+LPVTGAHLVVVLLESGGTLGTLD+ SIPGEPYAPNS+VSSKPPTSMVQHSSANVSFSCRDFYSNDITFGYGDDAFQAWMSTSSQQ+ ERVSDVGNGSY VELSTHNESETTLFFVQRDKLNIPGSPFEV
Sbjct:  283 VNATSDLIVVAEPEQGEDCDVGDGIPLEISSMPVTTSYVNIPASIFFQGSMKNVTNKYTSLSINLPVTGAHLVVVLLESGGTLGTLDIVSIPGEPYAPNSVVSSKPPTSMVQHSSANVSFSCRDFYSNDITFGYGDDAFQAWMSTSSQQIPERVSDVGNGSYVVELSTHNESETTLFFVQRDKLNIPGSPFEV 475
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BLAST of mRNA_Ecto-sp13_S_contig9933.21581.1 vs. uniprot
Match: A0A6H5JUL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUL9_9PHAE)

HSP 1 Score: 346 bits (887), Expect = 1.930e-111
Identity = 173/192 (90.10%), Postives = 181/192 (94.27%), Query Frame = 1 
Query:    1 VNATSELIVVAEPEQGEDCDVGGGIPLEISSMPVTTSYVDIPASIFFQGSMRNMTNKYTSLSISLPVTGAHLVVVLLESGGTLGTLDVASIPGEPYAPNSIVSSKPPTSMVQHSSANVSFSCRDFYSNDITFGYGDDAFQAWMSTSSQQLSERVSDVGNGSYAVELSTHNESETTLFFVQRDKLNIPGSPFE 576
            VNATS+LIVVAEPEQGEDCDVGGGIPLEISSMPVTTSYVDIPASIFFQGSM+NMTNKYTSLSI LPVTGAH VVVLLESGGTLGTLD+ SIPGEPYAP+S+VS KPPTSM QHSSANVSFSCRDFYSNDIT GYGDDAFQAWMSTSSQ++ ERV+DVGNGSY VELS HNESE  LFFVQRDKLNIPGSPFE
Sbjct:  285 VNATSDLIVVAEPEQGEDCDVGGGIPLEISSMPVTTSYVDIPASIFFQGSMKNMTNKYTSLSIRLPVTGAHSVVVLLESGGTLGTLDIVSIPGEPYAPSSVVSLKPPTSMAQHSSANVSFSCRDFYSNDITVGYGDDAFQAWMSTSSQEVPERVNDVGNGSYVVELSAHNESEAKLFFVQRDKLNIPGSPFE 476
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BLAST of mRNA_Ecto-sp13_S_contig9933.21581.1 vs. uniprot
Match: D8LI90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI90_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 9.980e-77
Identity = 136/337 (40.36%), Postives = 193/337 (57.27%), Query Frame = 1 
Query:    1 VNATSELIVVAEPEQGEDCDVGGGIPLEISSMPVTTSYVDIPASIFFQGSMRNMTNKYTSLSISLPVTGAHLVVVLLESGGTLGTLDVASIPGEPYAPNSIVSSKPPTSMVQHSSANVSFSCRDFYSNDITFGYGDDAFQAWM---STSSQQLSERVSDVGNGSYAVELSTHNESETTLFFVQRDKLNIPGSPFEVYILAPDQCVIEFLEIDVGECTTNLHRTVVHEWKDGITCEGGLALPGDTRVLCGFIPTRTSLGRAMMGFSAFGAIYAIFFLVWIVKHRETSVVKMGQPFVCQLFLLGCIALNLTAPLYLGEPSTLVCRLRPCVLHTALTFAS 1002
            V  TS++++ A PEQGE CD+G GI L++ S   + +  D+ A I+F G   N++++ T LS+    TG H + V L SG  L ++++  +   PYAP   V+ +PP+S  + SS   S + RDFY N IT  +GD+AFQAW           +  V D GNGSY V   T  ++ TT  FV+RD L +PGSPFEVY+  P  C +      VG+C ++L R V  +W     C G    P  + + CG+IP ++ LG  ++  +AF  +YA   L WI + R   +VK+ QPFVCQLFL GCI LN+TA   +G  S   C ++P +LH  LTF S
Sbjct:   91 VTTTSDVLITAIPEQGELCDLGDGIDLQVRSDEFSANIEDVGAWIYFDGRSLNVSHEETRLSLRFAYTGEHFINVYLASGARLASMNITVVAAAPYAPACEVTGRPPSSAPEGSSVVASLTARDFYGNSITEQWGDNAFQAWTYAGGVGDNVSAATVHDTGNGSYRVVSDTLGDAATTFLFVERDALGVPGSPFEVYVFGPANCAVMST---VGDCQSDLWRPVSQQWAARSPCIGQFDDPEHSGIGCGYIPLKSDLGTTIVVCAAFAGLYAAVILWWIRRERWAVIVKLSQPFVCQLFLAGCILLNITAAFLVGVASDPSCVMQPWMLHIGLTFTS 424
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BLAST of mRNA_Ecto-sp13_S_contig9933.21581.1 vs. uniprot
Match: D8LI91_ECTSI (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI91_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 2.790e-26
Identity = 61/109 (55.96%), Postives = 78/109 (71.56%), Query Frame = 1 
Query: 1015 MKTYRVHRLFNNQT-LARMSISDRSLVVWVLRLVSVDVMFLTLWLILDGPRASMVYFTQGYAELEKTTC--DPGAAYFGTILWIYKGGLNLFGVVMAAKTWHCADGVGE 1332
            MKTYRVHR+FNN++ L+R+SI+DR LV WV++LV+VD +FL LW I+D P+ S +  T G  E+    C    G + F  ILW +K  LN FGV+MAAKTWHC DGVGE
Sbjct:    1 MKTYRVHRIFNNESKLSRISITDRQLVTWVVKLVAVDAVFLLLWAIMDRPQRSDISETVGDIEVTNWKCVGASGTSVFRAILWSWKACLNCFGVIMAAKTWHCEDGVGE 109
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BLAST of mRNA_Ecto-sp13_S_contig9933.21581.1 vs. uniprot
Match: A0A6V1PF52_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PF52_HETAK)

HSP 1 Score: 103 bits (258), Expect = 5.390e-20
Identity = 67/231 (29.00%), Postives = 109/231 (47.19%), Query Frame = 1 
Query:  655 RTVVHEWKDGITCEGGLALPGDTRVLCGFIPTRTSLGRAMMGFSAFGAIYAIFFLVWIVKHRETSVVKMGQPFVCQLFLLGCIALNLTAPLYLGEPSTLVCRLRPCVLHTALTFASSCLYMKTYRVHRLFNNQTLARMSISDRSLVVWVLRLVSVDVMFLTLWLILDGPRASMVYFTQGYAELEKTTCDPGAAYFGTILWIYKGGLNLFGVVMAAKTWHCADGVGEVRHSM 1347
            R V   W + + CEGG+ LP    + C  +P  ++ GRA+      GA   +  L  +V  R T  +K  QP    +F+   +A+  +  L LG P+   C  R  + H A T     L++K YRV R+F N+ L R+ ++  +++ ++  L+ VDV  L  W +L  P A              T    G+  FG++L +Y  GL L G  ++ +T   +D   E ++ M
Sbjct:  494 RYVQFFWNETVACEGGVKLPSTVLLECDQVPFASATGRAVCAVCTLGAGVGLVLLGAVVALRRTPDIKASQPVFLGIFVGAAVAVTASNVLGLGPPTAATCLGRAWLFHLAFTAMFGALFLKAYRVWRIFGNKNLRRVKVTVAAILRFLGGLLLVDVALLGTWTVLAPPVAETTLLEITNVGAVPTAACRGSPTFGSLLGMYHVGLVLIGAYISYQTRMVSDKFSESKYIM 724
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BLAST of mRNA_Ecto-sp13_S_contig9933.21581.1 vs. uniprot
Match: W2Q8N7_PHYPN (G_PROTEIN_RECEP_F3_4 domain-containing protein n=9 Tax=Phytophthora parasitica TaxID=4792 RepID=W2Q8N7_PHYPN)

HSP 1 Score: 86.7 bits (213), Expect = 2.510e-14
Identity = 64/241 (26.56%), Postives = 114/241 (47.30%), Query Frame = 1 
Query:  601 CVIEFLEIDVGECTTNLHRTVVHEW--KDGIT------CEGGLALPGDTRVLCGFIPTRTSLGRAMMGFSAFGAIYAIFFLVWIVKHRETSVVKMGQPFVCQLFLLGCIALNLTAPLYLGEPSTLVCRLRPCVLHTALTFASSCLYMKTYRVHRLFNNQTLARMSISDRSLVVWVLRLVSVDVMFLTLWLILDGPRASMVYFTQGYAEL-----EKTTCDPGAAYFGTILWIYKGGLNLFG 1284
            C   F   DV ECT+  HR V   W   D +       C  G ALP    + C ++P  T+  +A+   +   A   +  + ++V  RE  +VK  Q       LLG + +     +Y GEPS +VC LRP ++  A T     L +K+ RV+R+F +  + R+ +S  +++  ++  + VD++ L    ++    A  +   +  +E+     ++  C   ++ F  +L+I+K  + LFG
Sbjct:  556 CDTSFYTYDVSECTSFGHREVTFRWLLPDAMNATFSSECTDGKALPDPVLIDCEYVPYNTAASKAVFVLACLFACVMLGCIGFVVYEREQPIVKRSQYQFLVTMLLGGVLMCYATVIYSGEPSRIVCALRPMLISWAFTLIFGSLVVKSMRVYRVFLSSAMKRVVLSAGTMMKVLVGFLIVDIVILVSRQLVSPSNA--IVKAEAVSEIGGLVVDRVRCASSSSVFVGLLFIWKA-VMLFG 793
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BLAST of mRNA_Ecto-sp13_S_contig9933.21581.1 vs. uniprot
Match: A0A6G0S4U8_9STRA (G_PROTEIN_RECEP_F3_4 domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0S4U8_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.660e-13
Identity = 58/246 (23.58%), Postives = 114/246 (46.34%), Query Frame = 1 
Query:  598 QCVIEFLEIDVGECTTNLHRTVVHEWK--------DGITCEGGLALPGDTRVLCGFIPTRTSLGRAMMGFSAFGAIYAIFFLVWIVKHRETSVVKMGQPFVCQLFLLGCIALNLTAPLYLGEPSTLVCRLRPCVLHTALTFASSCLYMKTYRVHRLFNNQTLARMSISDRSLVVWVLRLVSV----DVMFLTLWLILDGPRASM--VYFTQGYAELEKTTCDPGAAYFGTILWIYKGGLNLFGVVM 1293
            +C   F   +V +C ++  RTV + W             C GG+ LP D ++ C ++PT +    A+   S   A   +     + KHR   +VK  Q  + +L + G       A  Y G+PS L+C +RP ++    T     L MK+ RV+R+F   ++ R+ ++    +  +L+++++    D++    W   D P  ++  V  ++    +++ +C+  +    T+L  +K  L + G+ +
Sbjct:  411 ECDSTFYNYNVSQCDSDAQRTVQYFWSLPSAQNLLFSTECSGGVTLPEDVKIDCEYMPTSSPTFAALAVLSVIVASLLLVAAFLVYKHRSAPIVKRSQFEMLELMIFGGFFTTGAAMAYAGQPSRLLCGIRPILVCMGFTTIFGALVMKSLRVYRVFMKSSMKRVKVT----LFRILKMLAIFYVGDLVIFVGWYAADFPEPTVTTVEASEFRGTVDRMSCNSSSFISTTLLIFWKAILLVLGLYL 652
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BLAST of mRNA_Ecto-sp13_S_contig9933.21581.1 vs. uniprot
Match: A0A662WV06_9STRA (G_PROTEIN_RECEP_F3_4 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WV06_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.090e-13
Identity = 57/253 (22.53%), Postives = 115/253 (45.45%), Query Frame = 1 
Query:  580 YILAPDQCVIEFLEIDVGECTTNLHRTVVHEWK-----DGI---TCEGGLALPGDTRVLCGFIPTRTSLGRAMMGFSAFGAIYAIFFLVWIVKHRETSVVKMGQPFVCQLFLLGCIALNLTAPLYLGEPSTLVCRLRPCVLHTALTFASSCLYMKTYRVHRLFNNQTLARMSISDRSLVVWVLRLVSV----DVMFLTLWLILDGPRASMVYFTQG--YAELEKTTCDPGAAYFGTILWIYKGGLNLFGVVMA 1296
            +I A   C   F    V EC ++  RTV   W+     D +    C GG+ LP   ++ C ++PT T     +   +   A      +V++   R   +++  Q  + +L L+G       A  Y G+P+ L+C +RP ++    T     L +K+ RV+R+F    + R+ ++    +  +L+++S+    D+    +W  +D P+A++        +  +++ +C   +  F  +L  +K  L   G+ ++
Sbjct:  504 WIYAKPTCDASFYTYGVSECDSDAQRTVTFFWQLPNATDALFSAECIGGVKLPASVQIDCDYMPTSTPAFAVVAALATSVAGLIAVAMVFVFIQRNAPIIRRSQFEMLELMLIGGFFTCGAAVTYAGQPTNLLCGIRPVLITLGFTTIFGALVLKSLRVYRVFMRSAMKRVKVT----LFMILKILSIFYVGDIAIFVVWYAVDFPKATIKTENSSVFHGTVDRMSCHSSSFIFSALLIFWKAILLFLGLYLS 752
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BLAST of mRNA_Ecto-sp13_S_contig9933.21581.1 vs. uniprot
Match: K3X561_GLOUD (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X561_GLOUD)

HSP 1 Score: 76.3 bits (186), Expect = 5.060e-11
Identity = 58/257 (22.57%), Postives = 114/257 (44.36%), Query Frame = 1 
Query:  562 GSPFEVYILAPDQCVIEFLEIDVGECTTNLHRTVVHEW--------KDGITCE--GGLALPGDTRVLCGFIPTRTSLGRAMMGFSAFGAIYAIFFLVWIVKHRETSVVKMGQPFVCQLFLLGCIALNLTAPLYLGEPSTLVCRLRPCVLHTALTFASSCLYMKTYRVHRLFNNQTLARMSISDRSLVVWVLRLVSVDVMFLTLWLILDGPRASMVY--FTQGYAELEKTTCDPGAAYFGTILWIYKGGLNLFGVVMA 1296
             S +  +I     C   F E +V  C +   R V + W           + C+      LP D  V C ++P  + +       S       +  +V++   R+  ++K  Q  + +L + G I + L+A +Y GEP+ ++C  RP ++ +  T     L++K+ RV+R+F   ++ R+ IS   +V  +     VD++ + +W   D P+ +M      +   E+E+  C   +  F  +L  +K  +   G+ ++
Sbjct:  504 ASRWSSWISTKPTCDSTFYEYNVSACDSASKRRVHYYWLLADPANATRSLECDLSSTTMLPEDVLVDCEYVPFSSPVFMVCAITSGVLIGVLVLAMVFVFVCRKAPIIKRSQFELLELMIFGGILVCLSAVMYAGEPTNVLCAARPLLVSSGFTTIFGALFVKSLRVYRVFMKSSMKRVKISTLMMVKVLSVFYVVDLIIIGVWFGADFPKPTMTREPAIEFRGEVERVACHSESFIFSALLMFWKAIVLALGIYIS 760
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BLAST of mRNA_Ecto-sp13_S_contig9933.21581.1 vs. uniprot
Match: K3X562_GLOUD (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X562_GLOUD)

HSP 1 Score: 76.3 bits (186), Expect = 5.060e-11
Identity = 58/257 (22.57%), Postives = 114/257 (44.36%), Query Frame = 1 
Query:  562 GSPFEVYILAPDQCVIEFLEIDVGECTTNLHRTVVHEW--------KDGITCE--GGLALPGDTRVLCGFIPTRTSLGRAMMGFSAFGAIYAIFFLVWIVKHRETSVVKMGQPFVCQLFLLGCIALNLTAPLYLGEPSTLVCRLRPCVLHTALTFASSCLYMKTYRVHRLFNNQTLARMSISDRSLVVWVLRLVSVDVMFLTLWLILDGPRASMVY--FTQGYAELEKTTCDPGAAYFGTILWIYKGGLNLFGVVMA 1296
             S +  +I     C   F E +V  C +   R V + W           + C+      LP D  V C ++P  + +       S       +  +V++   R+  ++K  Q  + +L + G I + L+A +Y GEP+ ++C  RP ++ +  T     L++K+ RV+R+F   ++ R+ IS   +V  +     VD++ + +W   D P+ +M      +   E+E+  C   +  F  +L  +K  +   G+ ++
Sbjct:  561 ASRWSSWISTKPTCDSTFYEYNVSACDSASKRRVHYYWLLADPANATRSLECDLSSTTMLPEDVLVDCEYVPFSSPVFMVCAITSGVLIGVLVLAMVFVFVCRKAPIIKRSQFELLELMIFGGILVCLSAVMYAGEPTNVLCAARPLLVSSGFTTIFGALFVKSLRVYRVFMKSSMKRVKISTLMMVKVLSVFYVVDLIIIGVWFGADFPKPTMTREPAIEFRGEVERVACHSESFIFSALLMFWKAIVLALGIYIS 817
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9933.21581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJH1_ECTSI1.360e-11793.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUL9_9PHAE1.930e-11190.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI90_ECTSI9.980e-7740.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LI91_ECTSI2.790e-2655.96G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]
A0A6V1PF52_HETAK5.390e-2029.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W2Q8N7_PHYPN2.510e-1426.56G_PROTEIN_RECEP_F3_4 domain-containing protein n=9... [more]
A0A6G0S4U8_9STRA1.660e-1323.58G_PROTEIN_RECEP_F3_4 domain-containing protein n=4... [more]
A0A662WV06_9STRA3.090e-1322.53G_PROTEIN_RECEP_F3_4 domain-containing protein n=2... [more]
K3X561_GLOUD5.060e-1122.57G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]
K3X562_GLOUD5.060e-1122.57G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9933contigEcto-sp13_S_contig9933:159..5853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score120.9
Seed ortholog evalue1.5e-24
Seed eggNOG ortholog2880.D8LI91
Model size1359
KEGG koko:K04615
KEGG TC9.A.14.15.1
KEGG Pathwayko04024,ko04080,ko04727,ko04742,ko04915,ko05032,map04024,map04080,map04727,map04742,map04915,map05032
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0004888,GO:0004930,GO:0004965,GO:0005575,GO:0006935,GO:0006950,GO:0007154,GO:0007165,GO:0007186,GO:0007214,GO:0008066,GO:0008150,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0016021,GO:0016917,GO:0023052,GO:0030587,GO:0030594,GO:0031152,GO:0031224,GO:0031667,GO:0031668,GO:0031669,GO:0032502,GO:0033554,GO:0038023,GO:0040011,GO:0042221,GO:0042330,GO:0042594,GO:0043327,GO:0044425,GO:0044764,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051703,GO:0051704,GO:0051716,GO:0060089,GO:0065007,GO:0071496,GO:0090702,GO:0098630,GO:0098743,GO:0099120,GO:0099528
Exons10
EggNOG free text desc.G-protein coupled GABA receptor activity
EggNOG OGsKOG1055@1,KOG1055@2759
Ec32 ortholog descriptionImmunoglobulin E-set
Ec32 orthologEc-14_006340.1
Cds size1359
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04030
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9933.21581.1prot_Ecto-sp13_S_contig9933.21581.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9933 159..5853 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464253.8156834-CDS-Ecto-sp13_S_contig9933:158..2411681464253.8156834-CDS-Ecto-sp13_S_contig9933:158..241Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9933 159..241 +
1681464253.8307447-CDS-Ecto-sp13_S_contig9933:603..7421681464253.8307447-CDS-Ecto-sp13_S_contig9933:603..742Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9933 604..742 +
1681464253.8405192-CDS-Ecto-sp13_S_contig9933:1066..11481681464253.8405192-CDS-Ecto-sp13_S_contig9933:1066..1148Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9933 1067..1148 +
1681464253.8503852-CDS-Ecto-sp13_S_contig9933:1396..16681681464253.8503852-CDS-Ecto-sp13_S_contig9933:1396..1668Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9933 1397..1668 +
1681464253.861087-CDS-Ecto-sp13_S_contig9933:2026..21861681464253.861087-CDS-Ecto-sp13_S_contig9933:2026..2186Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9933 2027..2186 +
1681464253.8717701-CDS-Ecto-sp13_S_contig9933:2600..27071681464253.8717701-CDS-Ecto-sp13_S_contig9933:2600..2707Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9933 2601..2707 +
1681464253.882525-CDS-Ecto-sp13_S_contig9933:2992..31531681464253.882525-CDS-Ecto-sp13_S_contig9933:2992..3153Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9933 2993..3153 +
1681464253.8944225-CDS-Ecto-sp13_S_contig9933:3874..39521681464253.8944225-CDS-Ecto-sp13_S_contig9933:3874..3952Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9933 3875..3952 +
1681464253.9032989-CDS-Ecto-sp13_S_contig9933:4698..48141681464253.9032989-CDS-Ecto-sp13_S_contig9933:4698..4814Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9933 4699..4814 +
1681464253.9120288-CDS-Ecto-sp13_S_contig9933:5692..58531681464253.9120288-CDS-Ecto-sp13_S_contig9933:5692..5853Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9933 5693..5853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9933.21581.1

>prot_Ecto-sp13_S_contig9933.21581.1 ID=prot_Ecto-sp13_S_contig9933.21581.1|Name=mRNA_Ecto-sp13_S_contig9933.21581.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=453bp
VNATSELIVVAEPEQGEDCDVGGGIPLEISSMPVTTSYVDIPASIFFQGS
MRNMTNKYTSLSISLPVTGAHLVVVLLESGGTLGTLDVASIPGEPYAPNS
IVSSKPPTSMVQHSSANVSFSCRDFYSNDITFGYGDDAFQAWMSTSSQQL
SERVSDVGNGSYAVELSTHNESETTLFFVQRDKLNIPGSPFEVYILAPDQ
CVIEFLEIDVGECTTNLHRTVVHEWKDGITCEGGLALPGDTRVLCGFIPT
RTSLGRAMMGFSAFGAIYAIFFLVWIVKHRETSVVKMGQPFVCQLFLLGC
IALNLTAPLYLGEPSTLVCRLRPCVLHTALTFASSCLYMKTYRVHRLFNN
QTLARMSISDRSLVVWVLRLVSVDVMFLTLWLILDGPRASMVYFTQGYAE
LEKTTCDPGAAYFGTILWIYKGGLNLFGVVMAAKTWHCADGVGEVRHSMR
SR*
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mRNA from alignment at Ecto-sp13_S_contig9933:159..5853+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9933.21581.1 ID=mRNA_Ecto-sp13_S_contig9933.21581.1|Name=mRNA_Ecto-sp13_S_contig9933.21581.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5695bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9933:159..5853+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCAATGCTACATCTGAGTTGATCGTGGTAGCGGAGCCGGAGCAAGGAGA
AGACTGTGATGTCGGGGGTGGCATCCCCCTGGAGTGAGCGAATTTCGTAC
ACGCCACCTCTCGAGACACACCGTTTGGATTTGCCATCTGTTTAGAACGT
TGAGTTCTTGTGGCTATCGTTGTACATAGCCTCATGAAGTGCAATCATGA
TGCGGAACTCGCATGTCGTCGGCGTGAGATCATTTTCAAGATTAGTTTCA
GTTCGGAACACGTTGATCGTCGGAGATGGAGTCGGTCGTATGAATTGCCT
CCAATGAAAGTTATGAAGTGCTCTTGTCGCTGGTTCTGCAGAAGTTGCAC
TCAGAGCAGCATGTACCAAAGCGTGCGACAAAATGCGAATTCTCTGACTC
CGTCACGTCCCCTCCCTTTCTCTTCTCTGGTCCGCCTGTGCCCAGGATTT
CCTCTATGCCTGTGACTACTTCCTACGTCGATATCCCAGCGTCAATTTTC
TTTCAGGGGTCCATGAGGAATATGACCAACAAGTACACGTCCCTTTCGAT
AAGCTTACCGGTCACCGGGGCACACTTAGTCGTGGTGAGTGTCCAACACG
TAGTACGAAGCGTCTCCATGTGAGGAGACGTGATTGCTTCCTGAGAACAC
CGATCGTCTTGAAGACGGGCAGCCTCGAACATTACGCATTCGCCACACAT
CCACGAAGGGGACGTTAAGCCCCCATGTGACGCCAATGGCCTCCAAGCAA
TGGTGTTGAAGGTACAAGTTGCGGAACCCTGTCAAGCACCAGATTTTATT
CCTGATTACATCACTGAAGAACCCTTTTTTCCAGTCTTGTCTTCACTACT
GCTTCAACTGCTACTACTCAACTGTTACTACTCAACTGCTACGACTGCCG
CGCCAAAGGTGTTGTTAGAATCGGGTGGAACCCTGGGGACTTTGGACGTT
GCATCCATTCCAGGCGAACCCTACGCACCCAACTCCATCGGTAAGCACCT
GCTTGTACTTGTTGCTCTTTTTTGTCTCCGTACAATGCATTGTGTGCTGG
ACATGATGTGGAGAAGTCCCTTGGGAAGCAACTTCCGTTTTTTTTAGCAA
ATCTACCACGATATCCGTCTTGTTGACTAGCTGAAGATTGGCGGGAGAGA
ACGCGCCTACTCCAAACTACAGCCCGAACACACACGCATAAACACGGTAC
GACCTCCCGTACGCATACCTGTTTTCCCTCGTGGACAGTTTCTTCGAAGC
CGCCTACCTCGATGGTGCAACATTCCTCGGCGAACGTGTCTTTCTCATGC
CGAGATTTCTACAGCAACGACATCACGTTTGGGTACGGAGACGACGCCTT
CCAGGCCTGGATGAGCACTTCATCCCAGCAGCTTTCGGAGCGGGTCAGCG
ACGTCGGGAACGGCTCTTACGCGGTGGAGCTGAGCACTCATAATGAGTCA
GAGACGACGTTGTTTTTTGTCCAGAGGGACAAACTCAACATTCCCGGGAG
TCCGTTTGAGGTGCGAAGTTTACTGTGGGGGGTGATAGCGGTCTAAGTGG
GCGACAAGTATGAAAGACGCCGTGATCATGGGATCCAAGGAATACTTTGA
GGTGACTTGCAGCAGCAGCATCTCTTGGGTAGACCTGTGGAGGAGTTCGA
ATATTGCTGCACGGCGGTGCGTGGTCTTGTACGGGTATGTTGGACCATCA
CGGGACAACGGTAACTCGAGCTACATGTAGCTTTAAGTTCCACGAAGTAA
ACGCCACGTCCTGATTTGGATTTACACAGCATGGGTGCATTTTGGTTTGG
TTGTCCAACTGTATATGGCCGATTGCCCTGTCCCCCTGCATGTGGATGCC
GTACTCGTCCTCGGTAAGGTATACATCCTTGCGCCTGACCAGTGCGTGAT
TGAGTTCCTCGAAATTGACGTGGGCGAGTGCACAACAAATCTACACCGTA
CGGTCGTGCACGAGTGGAAGGATGGGATCACCTGTGAGGGAGGCCTGGCT
TTGCCAGGCGATACCAGGGTTTTATGCGGTGAGTGAGCTTGCTGCTCGAC
GGGTTTTTCTTCAGGACTATGCACAAAGGAGGCGAAGCGCAGCCCATGGT
TCTTTCCTTTGTTTCGTGATCGTCCGACGATCTCTTTCGTGATCATGCGA
CAATCTCTTCTCAAGGTGGGTGGCGAATGGTTTCTTGCCGCAGAGTTCTT
TTCGGCTGCTTTAATTTCTCTCAGTCTTGAGCTCGAAGGTTGGATACGTC
CGATCGCTGGTAGGAAATTCGTGTTTTTAAGGGTGAATTCTACGGACTAG
TCGTGGCCTTTTGGGCGGTACGATTGACACATACAGTTGTCTCTTCAACG
AGGACATTGGGGAGTCAATAGTGATAGCTAGCTGTGTCGTGCAGTACGCC
CTCATCGCTGTTGCCTGCGCCGTATGTGCTGAACCACTGCAGGCTTCATC
CCTACGAGGACTTCCTTAGGGCGTGCCATGATGGGGTTTTCGGCCTTCGG
AGCGATATACGCCATTTTCTTCCTCGTGTGGATAGTGAAGCATCGAGAGG
TACGCGTGTTATAGAGTACGCAAAAGCAACGCGATCCTCTCAACCAAGGC
GAAGGAGCAGACGAGCGTTGACAGACCAAATCAGTACCACTTTGCCCATG
CGATTCCGACCGAGGATGCCGGAACGAGTCCACCAAGTACGAGTGGATGC
GTTGCCGTGTGAGGAAATTCCGTATGGTGTTGCAACCTGTTATCTGGAAC
GCTCTACCGGTACTTCATTCAATCGCTCTTCTACGTCCGAACACTCTGTC
CGTCGTGGTTTTTTTTACGCATGATCGGCCCCAGACATCGGTGGTGAAAA
TGGGGCAGCCGTTCGTATGCCAACTGTTCCTGCTGGGGTGTATCGCTCTC
AACCTCACCGCGCCGCTTTACCTGGGAGAACCCTCGACTCTCGTCTGCCG
CTTGCGTCCTTGCGTGCTTCACACGGCATTAACATTTGCCAGCAGGTGCG
ATCCCTATGCAAAATTTGGGTGGCGGGGGACGAGAAGTAGCTCGTGCTGG
CCTGACAGGGGGTGTGGGTGGCGCACACTAATGTTTTGCATGCCTTAGCG
ATCAGACCATTGACCGCGCGTCCTCGAGAGGACGAAGCATTGTTCCCACA
GGACCGATCACCGATGGCCAATCGTTCGTTCCTGCTTACCCAAGGTGGCT
CAAAAGTGTCTTCCCTAGTCTATATGTTCGACCGATATCACTTCCCGCCT
TTTCAACCCACTTCCCCCAGTGCAGCTAAAGTGTTATCCTGGCTATGCCA
TGCCTCAAACAACTGGCGGGGGGTGGCATTAATCCCCTCCGCCAGTAGGA
TGAGCCCGCTGACTGTTGTGTGGTCTATCTGTCCAATCGAAGCGTACCTA
ATTGCGCCGCCTCACGCAACACCAGGTGTCCCTCCGGTACGTCTCTTTGT
GCGGTCCCAGTGGATGGCACCCGTGCAGTACGCCACCTTATGTTCATTTG
ATCATAGTGCTCATTTCATCCCTACCCGGGGAACACTGTTTCATCGTCTG
ATGTCGACGTGAATGGAGACTCGTCATGACTGCGTCCTCGTTGACAGATC
TTGTTTCCCCCCCTTTACCCCCCCATGCCGTTTCTGTTTGTCGATTTGTC
TGTCTGGTTGTCTGCCTGCTTGCGTGCATGTGTGCTCACTCGTCCATCCT
GCAACAATACCACCAGCTGCCTCTACATGAAGACGTACCGAGTCCATCGG
CTCTTCAACAACCAGACGCTAGCCCGCATGTCTATATCTGACAGGTACAC
TACATCAACTCGTCAGAAATAGACTTGTTCACTGTAGGTTTATAGCCTAC
ACGATAATGACGTGGTCTGCAACAATGGAGCTAAGGGTGGAGATTTATTC
GGAATACCGGGCGCAATGGGTTGAACAAGCCACAGCTTACCGCACATTCC
ACCCTCTCTCGGCGGAAGCGAACGCTTAGGCAGCTCAGTGGCCTTGATTT
TCTTACGACGTTCCAAGTCCCTCAGTCTATCGAGCTTGTCATGTTGGCCA
GCCTCTTGTCACTTAAGATCTGTTGAAAAAAAAGTTTATATCATCCCCGC
TTTGTTTCTACCACACCACAAAATCTACGTGGAGAGGAGTACTTCATCGT
TTTTCTCCTTGAAGTTCGCGTCTTCAACATAAGCCGACCAACGTTGCGGG
GTGAAGACACTACTGTACGTGGCCGCTTGTTTCCCGCACGGTCGTCGACA
TCGGTAGTTTGATTTTGTCTACTGTAGTATTCCGATCTAGGTTGCCTTAC
GTCTTTCGCGTATTTCGCTGATCGCGCTGCACGTGAGCAACAAAGTAGTT
CGTGGAATACCTTGCAGAAAACAAGTTCAAGTAAACACGTGCGTTCAACA
CGACATCTCGGTAACCAGCAGGTCCGCACTACGAGAGCAGCCACCAGGTC
CTTTCGGCAGCCGCGCGTCCGTTGATTTCCTATCACACGCCTACTGACGT
ATCCCGCATCATGCGTTGCATCGTGATATTCGTCCCGTAGGAGCCTGGTG
GTATGGGTGCTGAGACTTGTATCTGTCGATGTAATGTTTCTGACGCTATG
GCTGATCCTGGACGGCCCGCGAGCGTCCATGGTTTACTTCACACAAGGGT
ATGCAGGTACGACCACCTGCTGTACACAATACACGCATTATGCTGGTAAC
CGCTCTGATATGCCAAGAGTCTCGGTTCTGCAGAGGCCACATTTCCCCGT
GGCCGTCGTGGTGTACGCGAGCGGGACGTGCGCCGCCCGCTCGCCGCCCG
TGGTGCCTGGCGTCTACTTATTTTGGGTTACCCTGGTTTGACAGCCAAGT
TGCCGTGGTATCCGTTATCGGACATCACCCTCTTGTTTCTCCCCGCCGTA
CTACATCTTCCCGGAGGAACAGCAAAAAGTCCATGTTGCATGTCCCGCGA
GTACGCCGTCGCGTGTGGGGATAAGAACCGATATATCCCGCCCTCTATTC
GTGGCGGAAGGGGTGACGAATTATGTTTTCCGTATTCGGCAATGAAGACA
CACCAGTAAACGGCGCCTTATCGATTGAACACCCTTTCCTCATCGGCAGT
TTGAACGGTGACAAGTGGTTTGATTCCCCTCTCTTCACCATAGCTTAAAT
GTGAGCGGGTACAAGGGGGAGGGCAGTAGTATCATCTGATGTTAAGCTCG
CTGTCACCCTTCGTGAACCCCCAACGTGCCGCCGGAGGGACCCCCGTACT
TTGGTATCCCGCACCCGCTGAGGGGTAAATCGCAGCCCTATCCTCTTTGG
ATCACATCACCACAGAGGCCATCCTCGGCCTAAAAGACGAGAAGCACCCG
CCCTTACGAGTAGATCGCCCAGCACTGGAACTATAGCTTTGACCAGTTGG
CTGTATGCGTATGCGGCAGTACACACTTCCGTTGTCACGTGAAGAATTGC
TCGTCTATATTTCGCTTGTTTTGGAAAGTGGTCATGAATGTGTCTCTCTT
CTCGCTTCTCTGCCGCAAATACGTGACGTTGCAGAGTTGGAGAAAACAAC
TTGTGATCCCGGTGCGGCATATTTCGGCACAATCTTGTGGATCTACAAGG
GGGGGCTGAACCTCTTCGGGGTGGTAATGGCTGCGAAAACCTGGCACTGC
GCTGATGGTGTGGGTGAGGTGCGGCACAGCATGAGAAGTCGATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9933:159..5853+

>mRNA_Ecto-sp13_S_contig9933.21581.1 ID=mRNA_Ecto-sp13_S_contig9933.21581.1|Name=mRNA_Ecto-sp13_S_contig9933.21581.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1359bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9933:159..5853+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCAATGCTACATCTGAGTTGATCGTGGTAGCGGAGCCGGAGCAAGGAGA
AGACTGTGATGTCGGGGGTGGCATCCCCCTGGAGATTTCCTCTATGCCTG
TGACTACTTCCTACGTCGATATCCCAGCGTCAATTTTCTTTCAGGGGTCC
ATGAGGAATATGACCAACAAGTACACGTCCCTTTCGATAAGCTTACCGGT
CACCGGGGCACACTTAGTCGTGGTGTTGTTAGAATCGGGTGGAACCCTGG
GGACTTTGGACGTTGCATCCATTCCAGGCGAACCCTACGCACCCAACTCC
ATCGTTTCTTCGAAGCCGCCTACCTCGATGGTGCAACATTCCTCGGCGAA
CGTGTCTTTCTCATGCCGAGATTTCTACAGCAACGACATCACGTTTGGGT
ACGGAGACGACGCCTTCCAGGCCTGGATGAGCACTTCATCCCAGCAGCTT
TCGGAGCGGGTCAGCGACGTCGGGAACGGCTCTTACGCGGTGGAGCTGAG
CACTCATAATGAGTCAGAGACGACGTTGTTTTTTGTCCAGAGGGACAAAC
TCAACATTCCCGGGAGTCCGTTTGAGGTATACATCCTTGCGCCTGACCAG
TGCGTGATTGAGTTCCTCGAAATTGACGTGGGCGAGTGCACAACAAATCT
ACACCGTACGGTCGTGCACGAGTGGAAGGATGGGATCACCTGTGAGGGAG
GCCTGGCTTTGCCAGGCGATACCAGGGTTTTATGCGGCTTCATCCCTACG
AGGACTTCCTTAGGGCGTGCCATGATGGGGTTTTCGGCCTTCGGAGCGAT
ATACGCCATTTTCTTCCTCGTGTGGATAGTGAAGCATCGAGAGACATCGG
TGGTGAAAATGGGGCAGCCGTTCGTATGCCAACTGTTCCTGCTGGGGTGT
ATCGCTCTCAACCTCACCGCGCCGCTTTACCTGGGAGAACCCTCGACTCT
CGTCTGCCGCTTGCGTCCTTGCGTGCTTCACACGGCATTAACATTTGCCA
GCAGCTGCCTCTACATGAAGACGTACCGAGTCCATCGGCTCTTCAACAAC
CAGACGCTAGCCCGCATGTCTATATCTGACAGGAGCCTGGTGGTATGGGT
GCTGAGACTTGTATCTGTCGATGTAATGTTTCTGACGCTATGGCTGATCC
TGGACGGCCCGCGAGCGTCCATGGTTTACTTCACACAAGGGTATGCAGAG
TTGGAGAAAACAACTTGTGATCCCGGTGCGGCATATTTCGGCACAATCTT
GTGGATCTACAAGGGGGGGCTGAACCTCTTCGGGGTGGTAATGGCTGCGA
AAACCTGGCACTGCGCTGATGGTGTGGGTGAGGTGCGGCACAGCATGAGA
AGTCGATAG
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