mRNA_Ecto-sp13_S_contig9928.21574.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig9928.21574.1
Unique Name	mRNA_Ecto-sp13_S_contig9928.21574.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig9928.21574.1 vs. uniprot
Match: A0A6H5K8R4_9PHAE (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8R4_9PHAE)

HSP 1 Score: 330 bits (846), Expect = 1.570e-100
Identity = 193/225 (85.78%), Postives = 194/225 (86.22%), Query Frame = 1

Query:    1 PPPAHTTFLPVRRGLLYSPVVMSAVRIVLSSYADKTPGKFSDLLLARTLQIITLQLHGLQKDPADQELQGTEGGRSSVATGGASAGVSXXXXXXXXXXXXXXXXXXXXXXXXXEGAYFASVLLRQEAPVGGGERNSLDASWVLTEGTSGDGDGGGRTVGGSGGGVASVCEALGRVAHTHGALGTLFEDGLQWIVREFARRSPACRETLGRLGALPEETVTAAATV 675
            PPPAHTTFLPVRRGLLYSPVVMSAVRIVLSSYADKTPGKFSDLLLARTLQIITLQLHGLQ DPADQELQGTEGGRSS AT        X           XXXXXXXXXX   EGAYFASVLLRQE  VGG +RNSLDASWVLTEGTSGDGDGGGRTV  SGGGVASVCEALGRVAHTHGALGTLFEDGLQWIVREFARRSPACRETLGRLGALPEETV  AATV
Sbjct:  943 PPPAHTTFLPVRRGLLYSPVVMSAVRIVLSSYADKTPGKFSDLLLARTLQIITLQLHGLQ-DPADQELQGTEGGRSSGATXXXXXXXXXGGVEETKSSGGXXXXXXXXXXNSHEGAYFASVLLRQEGSVGGVKRNSLDASWVLTEGTSGDGDGGGRTVSWSGGGVASVCEALGRVAHTHGALGTLFEDGLQWIVREFARRSPACRETLGRLGALPEETVAVAATV 1166

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BLAST of mRNA_Ecto-sp13_S_contig9928.21574.1 vs. uniprot
Match: D7G3D4_ECTSI (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D4_ECTSI)

HSP 1 Score: 281 bits (720), Expect = 1.290e-83
Identity = 181/226 (80.09%), Postives = 182/226 (80.53%), Query Frame = 1

Query:    1 PPPAHTTFLPVRRGLLYSPVVMSAVRIVLSSYADKTPGKFSDLLLARTLQIITLQLHGLQKDPADQELQGTEGGRSSVATGGASAGVSXXXXXXXXXXXXXXXXXXXXXXXXXEGAYFASVLLRQEAPVGGGERNSLDASWVLTEGTSGDGDGGG-----RTVGGSGGGVASVCEALGRVAHTHGALGTLFEDGLQWIVREFARRSPACRETLGRLGALPEETVTA 663
            PPPAH TF+PVRRGLLYSPVVMSAVRIVLSSYADKTPGKFSDLLLARTLQIITLQLHGLQKDP D ELQG E GRSS A    SA V      XXXXXXXXXXXXXXXXXXXX          RQEA VGGGERNSLDASWVLTEG SGD          RTV   GGGVASVCEALGRV HTHGALGTLFEDGLQWIVREFARRSP CRETLGRLGALPEETVTA
Sbjct:  161 PPPAHATFVPVRRGLLYSPVVMSAVRIVLSSYADKTPGKFSDLLLARTLQIITLQLHGLQKDPEDHELQGKESGRSSGAAXXXSA-VDASGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRQEASVGGGERNSLDASWVLTEGASGDXXXXXXXXXXRTVSSGGGGVASVCEALGRVVHTHGALGTLFEDGLQWIVREFARRSPVCRETLGRLGALPEETVTA 385

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig9928.21574.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig9928.21574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5K8R4_9PHAE	1.570e-100	85.78	E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp....	[more]
D7G3D4_ECTSI	1.290e-83	80.09	E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sil...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig9928	contig	Ecto-sp13_S_contig9928:3825..5038 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	281.2
Seed ortholog evalue	4.5e-73
Seed eggNOG ortholog	2880.D7G3D4
Model size	716
KEGG ko	ko:K10625,ko:K10626,ko:K11978
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000151,GO:0000280,GO:0001101,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006310,GO:0006325,GO:0006342,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007140,GO:0007141,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009966,GO:0009968,GO:0009987,GO:0010029,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010528,GO:0010529,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0016043,GO:0016458,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016597,GO:0016740,GO:0019216,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023057,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031406,GO:0032006,GO:0032007,GO:0032446,GO:0032501,GO:0032504,GO:0032991,GO:0033522,GO:0033993,GO:0034641,GO:0035825,GO:0036094,GO:0036211,GO:0040029,GO:0042221,GO:0043161,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043200,GO:0043201,GO:0043207,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0044703,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048232,GO:0048285,GO:0048519,GO:0048523,GO:0048580,GO:0048583,GO:0048585,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050832,GO:0050896,GO:0050994,GO:0051171,GO:0051172,GO:0051239,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051603,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061630,GO:0061659,GO:0061982,GO:0065007,GO:0070647,GO:0070728,GO:0070887,GO:0071229,GO:0071230,GO:0071233,GO:0071310,GO:0071417,GO:0071495,GO:0071596,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097305,GO:0098542,GO:0140013,GO:0140096,GO:1900140,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1903046,GO:1903506,GO:1903507,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141
Exons	2
EggNOG free text desc.	E3 ubiquitin-protein ligase
EggNOG OGs	KOG1139@1,KOG1139@2759
EC	2.3.2.27
Cds size	714
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko01000,ko04121

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464253.368345-CDS-Ecto-sp13_S_contig9928:3826..4435	1681464253.368345-CDS-Ecto-sp13_S_contig9928:3826..4435	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig9928 3827..4435 -
1681464253.3805823-CDS-Ecto-sp13_S_contig9928:4933..5038	1681464253.3805823-CDS-Ecto-sp13_S_contig9928:4933..5038	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig9928 4934..5038 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig9928.21574.1	prot_Ecto-sp13_S_contig9928.21574.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig9928 3827..5038 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig9928:3825..5038-
coding sequence from alignment at Ecto-sp13_S_contig9928:3825..5038-

protein sequence of mRNA_Ecto-sp13_S_contig9928.21574.1

>prot_Ecto-sp13_S_contig9928.21574.1 ID=prot_Ecto-sp13_S_contig9928.21574.1|Name=mRNA_Ecto-sp13_S_contig9928.21574.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=238bp
PPPAHTTFLPVRRGLLYSPVVMSAVRIVLSSYADKTPGKFSDLLLARTLQ
IITLQLHGLQKDPADQELQGTEGGRSSVATGGASAGVSSGGVEETKSSGG
GGGGGRSSSSNNHEGAYFASVLLRQEAPVGGGERNSLDASWVLTEGTSGD
GDGGGRTVGGSGGGVASVCEALGRVAHTHGALGTLFEDGLQWIVREFARR
SPACRETLGRLGALPEETVTAAATVSGGAGGDKGVAVG

mRNA from alignment at Ecto-sp13_S_contig9928:3825..5038-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig9928.21574.1 ID=mRNA_Ecto-sp13_S_contig9928.21574.1|Name=mRNA_Ecto-sp13_S_contig9928.21574.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1214bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9928:3825..5038- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCCTCCGGCGCACACCACCTTCCTCCCCGTCCGCCGCGGTCTGCTGTA
CAGCCCGGTCGTCATGAGCGCCGTACGGATTGTCCTCTCCAGCTACGCCG
ATAAGGTACGACAGGCGAGCGGGCGGCTTAATCTATCTATCACCCCGGCA
AGACTTTTGCCGTGTTTTTCTTTTTGGTGTGGCTAGCAAGCTGCTGCCCT
TAGGCTGCTACGCTTCGCGCAGCAATTTTTTGTTTTGTTTTGTTTTTCGG
TTGTTATCTACCACGTCCGTGTATGCACGACAACCGACAACATCTAGCCG
CCGTTTATTTCTCTGCGGTTGGGCAACGGGCCCTTGCCATTGCTATTGCT
GTCTCGCAGCGATTGCGGCGTCGCCGTGGTATCCGTTAACTTTGGTACCG
GCATGCGCAAAGCTGTAAAAGTCGACAACCTTCATACCCCCCCCCCCCCC
CCCCCCCCCAACCCCCCTCCCGCAACCCCCCCCCANNNNNNNNNNGGCTC
TGCGTTTGTTACCTTTGACTTGTTGACGAGAAATACAAAAACGAAAAAAA
AGAGACATCTTTCCGCCCCCCCCCCCCCCCTTACCACAAATTCCTGGCCG
CAGACCCCCGGCAAATTCTCGGACCTTCTACTTGCGAGGACGCTGCAGAT
CATCACCCTCCAGCTCCACGGCCTGCAGAAGGACCCGGCGGACCAGGAGT
TGCAGGGCACGGAAGGCGGTCGCAGCAGCGTTGCCACCGGCGGCGCATCT
GCTGGCGTTTCCAGTGGCGGCGTTGAGGAGACGAAGAGCAGCGGAGGCGG
CGGAGGCGGTGGCCGCAGCAGCAGCAGTAACAACCACGAGGGCGCTTACT
TCGCTTCGGTGTTGCTGCGGCAAGAAGCACCCGTGGGCGGAGGCGAGAGA
AACAGCCTCGATGCTTCGTGGGTGTTGACCGAAGGCACTTCCGGCGACGG
CGACGGCGGCGGCCGCACGGTTGGCGGGAGCGGGGGCGGCGTGGCCAGCG
TGTGCGAGGCGCTGGGGAGGGTGGCCCACACCCACGGCGCCCTGGGCACG
CTTTTCGAGGACGGTCTCCAGTGGATTGTGAGGGAGTTCGCCCGCCGCAG
CCCCGCCTGCCGTGAGACCCTTGGCCGCCTCGGCGCCCTGCCCGAAGAAA
CCGTAACCGCCGCTGCTACGGTGAGCGGCGGTGCTGGCGGTGACAAGGGT
GTGGCCGTTGGGGG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9928:3825..5038-

>mRNA_Ecto-sp13_S_contig9928.21574.1 ID=mRNA_Ecto-sp13_S_contig9928.21574.1|Name=mRNA_Ecto-sp13_S_contig9928.21574.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9928:3825..5038- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCCTCCGGCGCACACCACCTTCCTCCCCGTCCGCCGCGGTCTGCTGTA
CAGCCCGGTCGTCATGAGCGCCGTACGGATTGTCCTCTCCAGCTACGCCG
ATAAGACCCCCGGCAAATTCTCGGACCTTCTACTTGCGAGGACGCTGCAG
ATCATCACCCTCCAGCTCCACGGCCTGCAGAAGGACCCGGCGGACCAGGA
GTTGCAGGGCACGGAAGGCGGTCGCAGCAGCGTTGCCACCGGCGGCGCAT
CTGCTGGCGTTTCCAGTGGCGGCGTTGAGGAGACGAAGAGCAGCGGAGGC
GGCGGAGGCGGTGGCCGCAGCAGCAGCAGTAACAACCACGAGGGCGCTTA
CTTCGCTTCGGTGTTGCTGCGGCAAGAAGCACCCGTGGGCGGAGGCGAGA
GAAACAGCCTCGATGCTTCGTGGGTGTTGACCGAAGGCACTTCCGGCGAC
GGCGACGGCGGCGGCCGCACGGTTGGCGGGAGCGGGGGCGGCGTGGCCAG
CGTGTGCGAGGCGCTGGGGAGGGTGGCCCACACCCACGGCGCCCTGGGCA
CGCTTTTCGAGGACGGTCTCCAGTGGATTGTGAGGGAGTTCGCCCGCCGC
AGCCCCGCCTGCCGTGAGACCCTTGGCCGCCTCGGCGCCCTGCCCGAAGA
AACCGTAACCGCCGCTGCTACGGTGAGCGGCGGTGCTGGCGGTGACAAGG
GTGTGGCCGTTGGG