mRNA_Ecto-sp13_S_contig99249.21570.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig99249.21570.1
Unique NamemRNA_Ecto-sp13_S_contig99249.21570.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig99249.21570.1 vs. uniprot
Match: A0A6H5JAH4_9PHAE (Protein farnesyltransferase subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH4_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 3.330e-14
Identity = 35/44 (79.55%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 RPRDFYHTCYTLSGLSVAQHCLSESPAVMGNSSNLLVSRPSTYV 132
            +PRDFYHTCYTLSGLSVAQHCLS SP V+GNSSNLL  RP+  V
Sbjct:  222 KPRDFYHTCYTLSGLSVAQHCLSSSPTVVGNSSNLL--RPTNPV 263
[Close]
BLAST of mRNA_Ecto-sp13_S_contig99249.21570.1 vs. uniprot
Match: D7FXI8_ECTSI (Protein farnesyltransferase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI8_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 6.350e-14
Identity = 35/44 (79.55%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 RPRDFYHTCYTLSGLSVAQHCLSESPAVMGNSSNLLVSRPSTYV 132
            +PRDFYHTCYTLSGLSVAQHCLS SP V+GNSSNLL  RP+  V
Sbjct:  467 KPRDFYHTCYTLSGLSVAQHCLSSSPTVVGNSSNLL--RPTNPV 508
[Close]
BLAST of mRNA_Ecto-sp13_S_contig99249.21570.1 vs. uniprot
Match: A0A7S3UTH9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTH9_HETAK)

HSP 1 Score: 60.1 bits (144), Expect = 1.890e-10
Identity = 28/44 (63.64%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    7 RDFYHTCYTLSGLSVAQHCLSESPAVMGNSSNLLVSRPSTYVPR 138
            RDFYHTCY LSGLSVAQH L+E P V G+ SNLLV     ++ R
Sbjct:   48 RDFYHTCYNLSGLSVAQHVLAERPVVFGDPSNLLVRENMCFLRR 91
[Close]
BLAST of mRNA_Ecto-sp13_S_contig99249.21570.1 vs. uniprot
Match: A0A836CMB6_9STRA (Protein farnesyltransferase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMB6_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 7.460e-10
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 RPRDFYHTCYTLSGLSVAQHCLSESPAVMGNSSNLLVSRPSTY 129
            + RDFYHTCY LSGLSV QHCL+E+P+V+G+S+N L+     Y
Sbjct:  451 KTRDFYHTCYNLSGLSVTQHCLTETPSVLGDSANELLPTNPLY 493
[Close]
BLAST of mRNA_Ecto-sp13_S_contig99249.21570.1 vs. uniprot
Match: A0A7S3UVL6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVL6_HETAK)

HSP 1 Score: 57.8 bits (138), Expect = 1.900e-9
Identity = 26/34 (76.47%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    7 RDFYHTCYTLSGLSVAQHCLSESPAVMGNSSNLL 108
            RDFYHTCY LSGLSVAQH L+E P V G+ SNLL
Sbjct:   48 RDFYHTCYNLSGLSVAQHVLAERPVVFGDPSNLL 81
[Close]
BLAST of mRNA_Ecto-sp13_S_contig99249.21570.1 vs. uniprot
Match: A0A7S2PM80_9STRA (Protein farnesyltransferase subunit beta n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PM80_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.460e-7
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 RPRDFYHTCYTLSGLSVAQHCLSES--PAVMGNSSNLL 108
            +PRDFYH+CY LSGLSVAQH LSE+  P V G++ NLL
Sbjct:  170 KPRDFYHSCYNLSGLSVAQHVLSENGVPLVYGDNRNLL 207
[Close]
BLAST of mRNA_Ecto-sp13_S_contig99249.21570.1 vs. uniprot
Match: A0A8K0DF95_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0DF95_9COLE)

HSP 1 Score: 54.3 bits (129), Expect = 2.840e-7
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 RPRDFYHTCYTLSGLSVAQHCLSESPAVMGNSSNLL 108
            +PRD YHTCYTLSGLSVAQHC+  S  V+G + N L
Sbjct:  346 KPRDIYHTCYTLSGLSVAQHCVDGSLNVLGPADNKL 381
[Close]
BLAST of mRNA_Ecto-sp13_S_contig99249.21570.1 vs. uniprot
Match: A0A7S1KPD5_9EUKA (Protein farnesyltransferase subunit beta n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1KPD5_9EUKA)

HSP 1 Score: 53.5 bits (127), Expect = 5.330e-7
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 RPRDFYHTCYTLSGLSVAQHCLSESPAVMGNSSNLL 108
            R  DFYHTCY LSGLS+AQH  S +P+++GN SN+L
Sbjct:  450 RGPDFYHTCYALSGLSIAQHNPSGTPSILGNPSNIL 485
[Close]
BLAST of mRNA_Ecto-sp13_S_contig99249.21570.1 vs. uniprot
Match: A0A7R8Z0M6_HERIL (Protein farnesyltransferase subunit beta n=1 Tax=Hermetia illucens TaxID=343691 RepID=A0A7R8Z0M6_HERIL)

HSP 1 Score: 52.8 bits (125), Expect = 9.960e-7
Identity = 28/47 (59.57%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    1 RPRDFYHTCYTLSGLSVAQHCLSE-SPAVMGNSSN-LLVSRPSTYVP 135
            +P+D YHTCYTLSG+SVAQHC S   P V+GN  N LL   P   VP
Sbjct:  345 KPQDLYHTCYTLSGVSVAQHCSSYLQPYVLGNPENELLPVHPLHNVP 391
[Close]
BLAST of mRNA_Ecto-sp13_S_contig99249.21570.1 vs. uniprot
Match: A0A2M3ZB72_9DIPT (Protein farnesyltransferase subunit beta (Fragment) n=1 Tax=Anopheles braziliensis TaxID=58242 RepID=A0A2M3ZB72_9DIPT)

HSP 1 Score: 52.4 bits (124), Expect = 1.360e-6
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    1 RPRDFYHTCYTLSGLSVAQHCLSES-PAVMGNS--SNLLVSRPSTYVP 135
            +P D YHTCYTLSGLSVAQHC S S P V+G+   + LL + P   +P
Sbjct:  258 KPADLYHTCYTLSGLSVAQHCESHSLPLVLGDEHMNELLPTHPVHNIP 305
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig99249.21570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAH4_9PHAE3.330e-1479.55Protein farnesyltransferase subunit beta n=1 Tax=E... [more]
D7FXI8_ECTSI6.350e-1479.55Protein farnesyltransferase subunit beta n=1 Tax=E... [more]
A0A7S3UTH9_HETAK1.890e-1063.64Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A836CMB6_9STRA7.460e-1060.47Protein farnesyltransferase subunit beta n=1 Tax=T... [more]
A0A7S3UVL6_HETAK1.900e-976.47Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2PM80_9STRA1.460e-768.42Protein farnesyltransferase subunit beta n=1 Tax=L... [more]
A0A8K0DF95_9COLE2.840e-766.67Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A7S1KPD5_9EUKA5.330e-763.89Protein farnesyltransferase subunit beta n=1 Tax=P... [more]
A0A7R8Z0M6_HERIL9.960e-759.57Protein farnesyltransferase subunit beta n=1 Tax=H... [more]
A0A2M3ZB72_9DIPT1.360e-656.25Protein farnesyltransferase subunit beta (Fragment... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig99249contigEcto-sp13_S_contig99249:177..317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score74.7
Seed ortholog evalue1.3e-11
Seed eggNOG ortholog2880.D7FXI8
Preferred nameFNTB
Model size141
KEGG rclassRC00069,RC03004
KEGG koko:K05954
KEGG ReactionR09844
KEGG Pathwayko00900,ko01130,map00900,map01130
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0004660,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005875,GO:0005965,GO:0006464,GO:0006807,GO:0006950,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008284,GO:0008285,GO:0008318,GO:0009414,GO:0009415,GO:0009611,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009787,GO:0009788,GO:0009889,GO:0009891,GO:0009893,GO:0009934,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010035,GO:0010118,GO:0010556,GO:0010557,GO:0010604,GO:0010646,GO:0010648,GO:0014070,GO:0015630,GO:0016740,GO:0016765,GO:0018342,GO:0018343,GO:0019222,GO:0019538,GO:0022603,GO:0023051,GO:0023057,GO:0032991,GO:0033036,GO:0033993,GO:0034097,GO:0034613,GO:0036211,GO:0042060,GO:0042127,GO:0042221,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045787,GO:0046872,GO:0046914,GO:0048145,GO:0048146,GO:0048509,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051179,GO:0051641,GO:0051726,GO:0051769,GO:0051770,GO:0060255,GO:0065007,GO:0070727,GO:0071704,GO:0072657,GO:0072659,GO:0097305,GO:0097354,GO:0140096,GO:1901419,GO:1901420,GO:1901564,GO:1901700,GO:1902494,GO:1905957,GO:1905958,GO:1990069,GO:1990234,GO:1990778
Exons1
EggNOG free text desc.Prenyltransferase
EggNOG OGsCOG5029@1,KOG0365@2759
EC2.5.1.58
Cds size141
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01006
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464253.1667745-CDS-Ecto-sp13_S_contig99249:176..3171681464253.1667745-CDS-Ecto-sp13_S_contig99249:176..317Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig99249 177..317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig99249.21570.1prot_Ecto-sp13_S_contig99249.21570.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig99249 177..317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig99249.21570.1

>prot_Ecto-sp13_S_contig99249.21570.1 ID=prot_Ecto-sp13_S_contig99249.21570.1|Name=mRNA_Ecto-sp13_S_contig99249.21570.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
RPRDFYHTCYTLSGLSVAQHCLSESPAVMGNSSNLLVSRPSTYVPR*
back to top

mRNA from alignment at Ecto-sp13_S_contig99249:177..317-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig99249.21570.1 ID=mRNA_Ecto-sp13_S_contig99249.21570.1|Name=mRNA_Ecto-sp13_S_contig99249.21570.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig99249:177..317- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCCGAGAGACTTCTACCACACGTGCTACACCCTCAGCGGCCTGTCCGT
CGCCCAGCACTGCCTCTCTGAAAGCCCGGCGGTCATGGGGAACTCCTCCA
ACCTTCTGGTGAGTCGGCCATCTACGTACGTGCCGCGTTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig99249:177..317-

>mRNA_Ecto-sp13_S_contig99249.21570.1 ID=mRNA_Ecto-sp13_S_contig99249.21570.1|Name=mRNA_Ecto-sp13_S_contig99249.21570.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig99249:177..317- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCCGAGAGACTTCTACCACACGTGCTACACCCTCAGCGGCCTGTCCGT
CGCCCAGCACTGCCTCTCTGAAAGCCCGGCGGTCATGGGGAACTCCTCCA
ACCTTCTGGTGAGTCGGCCATCTACGTACGTGCCGCGTTGA
back to top