mRNA_Ecto-sp13_S_contig9922.21567.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9922.21567.1
Unique NamemRNA_Ecto-sp13_S_contig9922.21567.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9922.21567.1 vs. uniprot
Match: D8LFZ3_ECTSI (Hypothetcal protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFZ3_ECTSI)

HSP 1 Score: 244 bits (623), Expect = 2.160e-80
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 
Query:    1 APQKCSAPQYVDHVMTWVEDQINKEDIFPTTPDATYPKDFKKTAMTIFKRLFRVFAIIYCSHFDNIEQLGAAAHLNTSFKHFIFFALEFDLLARKEMDPLEALVTPLVEEFSRGTMST 354
            APQKCSAPQYVDHVMTWVEDQINKEDIFPTTPDATYPKDFKKTAMTIFKRLFRVFAIIYCSHFDNIEQLGAAAHLNTSFKHFIFFALEFDLLARKEMDPLEALVTPLVEEFSRGTMST
Sbjct:  112 APQKCSAPQYVDHVMTWVEDQINKEDIFPTTPDATYPKDFKKTAMTIFKRLFRVFAIIYCSHFDNIEQLGAAAHLNTSFKHFIFFALEFDLLARKEMDPLEALVTPLVEEFSRGTMST 229
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9922.21567.1 vs. uniprot
Match: A0A836C980_9STRA (Hypothetcal protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C980_9STRA)

HSP 1 Score: 190 bits (482), Expect = 6.370e-59
Identity = 89/111 (80.18%), Postives = 98/111 (88.29%), Query Frame = 1 
Query:    4 PQKCSAPQYVDHVMTWVEDQINKEDIFPTTPDATYPKDFKKTAMTIFKRLFRVFAIIYCSHFDNIEQLGAAAHLNTSFKHFIFFALEFDLLARKEMDPLEALVTPLVEEFS 336
            PQKCSAPQYVD VMTWVE+QIN E+IFPT+ DA YPK+FKKT   IFKRLFRVFAIIYCSHF+ IEQLGAA HLNTSFKHFIFF LEF+LL R+EMDPL+ALVTPL+ E S
Sbjct:  115 PQKCSAPQYVDFVMTWVENQINNEEIFPTSADAAYPKEFKKTVQNIFKRLFRVFAIIYCSHFETIEQLGAAKHLNTSFKHFIFFVLEFELLPRREMDPLDALVTPLIAEHS 225
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9922.21567.1 vs. uniprot
Match: A0A835YWJ4_9STRA (Hypothetcal protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWJ4_9STRA)

HSP 1 Score: 186 bits (473), Expect = 1.880e-57
Identity = 89/114 (78.07%), Postives = 97/114 (85.09%), Query Frame = 1 
Query:    4 PQKCSAPQYVDHVMTWVEDQINKEDIFPTTPDAT-YPKDFKKTAMTIFKRLFRVFAIIYCSHFDNIEQLGAAAHLNTSFKHFIFFALEFDLLARKEMDPLEALVTPLVEEFSRG 342
            PQKCSAPQYVD VM WVEDQIN E IFPT+ D T YPKDFK+   T+FKRLFRVFAIIYCSHF+ IEQLGAA HLNTSFKH IFF LEFDLL R+EMDPL+ALVTPL+ EF+ G
Sbjct:  118 PQKCSAPQYVDFVMAWVEDQINNEGIFPTSGDVTAYPKDFKRVVATVFKRLFRVFAIIYCSHFETIEQLGAAKHLNTSFKHLIFFVLEFDLLPRREMDPLDALVTPLIAEFNGG 231
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9922.21567.1 vs. uniprot
Match: A0A7S2W3I1_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W3I1_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.450e-39
Identity = 65/112 (58.04%), Postives = 80/112 (71.43%), Query Frame = 1 
Query:    4 PQKCSAPQYVDHVMTWVEDQINKEDIFPTTPDATYPKDFKKTAMTIFKRLFRVFAIIYCSHFDNIEQLGAAAHLNTSFKHFIFFALEFDLLARKEMDPLEALVTPLVEEFSR 339
            P +CS+P+YVD+VM WVEDQIN EDIFP      +P DFK     IFKRLFR+FAIIY  HF  IE+L AAAHLNT FKHF+FF LEF+L+  KEM  L+     +++EF +
Sbjct:  104 PMRCSSPEYVDYVMMWVEDQINNEDIFPVQETQAFPSDFKVYVRDIFKRLFRIFAIIYHRHFQTIEKLDAAAHLNTCFKHFMFFVLEFNLVDEKEMKALKGPADRMIDEFKK 215
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9922.21567.1 vs. uniprot
Match: A0A6V1P827_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P827_HETAK)

HSP 1 Score: 139 bits (350), Expect = 5.890e-39
Identity = 68/113 (60.18%), Postives = 83/113 (73.45%), Query Frame = 1 
Query:    1 APQKCSAPQYVDHVMTWVEDQINKEDIFPTTPDA--TYPKDFKKTAMTIFKRLFRVFAIIYCSHFDNIEQLGAAAHLNTSFKHFIFFALEFDLLARKEMDPLEALVTPLVEEF 333
            AP KCSA QYVD+VMTW EDQIN E  FP  P +   YP DF   A T+FKRLFRV+AI+Y   FD +E L AAAH+NTSFKHF+FFALEFDL+  +E +PL+ L+  L ++F
Sbjct:  103 APIKCSAHQYVDYVMTWTEDQINDEAKFPADPGSGEAYPSDFLALAKTVFKRLFRVWAIVYAGLFDAVEALDAAAHVNTSFKHFVFFALEFDLVDPREFEPLQQLIERLQQDF 215
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9922.21567.1 vs. uniprot
Match: UPI0007BA247B (MOB kinase activator 1B-like n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=UPI0007BA247B)

HSP 1 Score: 130 bits (328), Expect = 1.840e-36
Identity = 60/109 (55.05%), Postives = 80/109 (73.39%), Query Frame = 1 
Query:    4 PQKCSAPQYVDHVMTWVEDQINKEDIFPTTPDATYPKDFKKTAMTIFKRLFRVFAIIYCSHFDNIEQLGAAAHLNTSFKHFIFFALEFDLLARKEMDPLEALVTPLVEE 330
            P KCSAP+Y+D++MTWV+DQ++ E +FP+     +PK+F   A TI KRLFRV+A IY  HFD++ QL   AHLNTSFKHFIFF  EF+L+ RKE+ PL+ L+  L  +
Sbjct:   53 PIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHIYHQHFDSVIQLQEEAHLNTSFKHFIFFVQEFNLIDRKELAPLQELIEKLTSK 161
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9922.21567.1 vs. uniprot
Match: UPI001ED88542 (MOB kinase activator 1B-like n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED88542)

HSP 1 Score: 132 bits (333), Expect = 2.260e-36
Identity = 62/112 (55.36%), Postives = 80/112 (71.43%), Query Frame = 1 
Query:    4 PQKCSAPQYVDHVMTWVEDQINKEDIFPTTPDATYPKDFKKTAMTIFKRLFRVFAIIYCSHFDNIEQLGAAAHLNTSFKHFIFFALEFDLLARKEMDPLEALVTPLVEEFSR 339
            P KCSAP+Y+D++MTWV+DQ++ E +FP+     +PK+F   A TI KRLFRV+A  Y  HF  + QLG  AHLNTSFKHFIFF  EFDL+ RKE+ PL+ L+  L  + SR
Sbjct:  122 PIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFLSIAKTILKRLFRVYAHTYHQHFSEVVQLGEEAHLNTSFKHFIFFVQEFDLIDRKELAPLQELIEKLSSKDSR 233
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9922.21567.1 vs. uniprot
Match: A0A195C8N7_9HYME (Mps one binder kinase activator-like 1A n=6 Tax=Neoptera TaxID=33340 RepID=A0A195C8N7_9HYME)

HSP 1 Score: 131 bits (329), Expect = 2.740e-36
Identity = 60/112 (53.57%), Postives = 81/112 (72.32%), Query Frame = 1 
Query:    4 PQKCSAPQYVDHVMTWVEDQINKEDIFPTTPDATYPKDFKKTAMTIFKRLFRVFAIIYCSHFDNIEQLGAAAHLNTSFKHFIFFALEFDLLARKEMDPLEALVTPLVEEFSR 339
            P KCSAP+Y+D++MTWV+DQ++ E +FP+     +PK+F   A TI KRLFRV+A IY  HF  + QLG  AHLNTSFKHFIFF  EF+L+ R+E+ PL+ L+  L  + +R
Sbjct:   78 PIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFLSIAKTILKRLFRVYAHIYHQHFSEVVQLGEEAHLNTSFKHFIFFVQEFNLIERRELAPLQELIEKLTAKDAR 189
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9922.21567.1 vs. uniprot
Match: A0A821L1B8_9NEOB ((mimic poison frog) hypothetical protein n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A821L1B8_9NEOB)

HSP 1 Score: 129 bits (325), Expect = 3.280e-36
Identity = 59/106 (55.66%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:    4 PQKCSAPQYVDHVMTWVEDQINKEDIFPTTPDATYPKDFKKTAMTIFKRLFRVFAIIYCSHFDNIEQLGAAAHLNTSFKHFIFFALEFDLLARKEMDPLEALVTPL 321
            P KCSAP+Y+D++MTWV+DQ++ E +FP+     +PK+F   A TI KRLFRV+A IY  HFD++ QL   AHLNTSFKHFIFF  EF+L+ R+E+ PL+ L+  L
Sbjct:   37 PIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHIYHQHFDSVMQLQEEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKL 142
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9922.21567.1 vs. uniprot
Match: A0A6P3XIJ2_DINQU (MOB kinase activator-like 1 isoform X2 n=2 Tax=Ponerini TaxID=141711 RepID=A0A6P3XIJ2_DINQU)

HSP 1 Score: 130 bits (328), Expect = 3.890e-36
Identity = 60/112 (53.57%), Postives = 81/112 (72.32%), Query Frame = 1 
Query:    4 PQKCSAPQYVDHVMTWVEDQINKEDIFPTTPDATYPKDFKKTAMTIFKRLFRVFAIIYCSHFDNIEQLGAAAHLNTSFKHFIFFALEFDLLARKEMDPLEALVTPLVEEFSR 339
            P KCSAP+Y+D++MTWV+DQ++ E +FP+     +PK+F   A TI KRLFRV+A IY  HF  + QLG  AHLNTSFKHFIFF  EF+L+ R+E+ PL+ L+  L  + +R
Sbjct:   78 PIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFLSIAKTILKRLFRVYAHIYHQHFTEVVQLGEEAHLNTSFKHFIFFVQEFNLIERRELAPLQELIEKLTAKDAR 189
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9922.21567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFZ3_ECTSI2.160e-80100.00Hypothetcal protein n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A836C980_9STRA6.370e-5980.18Hypothetcal protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A835YWJ4_9STRA1.880e-5778.07Hypothetcal protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S2W3I1_9STRA1.450e-3958.04Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A6V1P827_HETAK5.890e-3960.18Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI0007BA247B1.840e-3655.05MOB kinase activator 1B-like n=1 Tax=Sinocyclochei... [more]
UPI001ED885422.260e-3655.36MOB kinase activator 1B-like n=1 Tax=Ischnura eleg... [more]
A0A195C8N7_9HYME2.740e-3653.57Mps one binder kinase activator-like 1A n=6 Tax=Ne... [more]
A0A821L1B8_9NEOB3.280e-3655.66(mimic poison frog) hypothetical protein n=1 Tax=R... [more]
A0A6P3XIJ2_DINQU3.890e-3653.57MOB kinase activator-like 1 isoform X2 n=2 Tax=Pon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9922contigEcto-sp13_S_contig9922:3926..5984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score244.2
Seed ortholog evalue3.1e-62
Seed eggNOG ortholog2880.D8LFZ3
Model size357
KEGG koko:K06685
KEGG Pathwayko04111,ko04390,ko04391,ko04392,map04111,map04390,map04391,map04392
KEGG ModuleM00683
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.hippo signaling
EggNOG OGsKOG0440@1,KOG0440@2759
Cds size357
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464252.958692-CDS-Ecto-sp13_S_contig9922:3925..40421681464252.958692-CDS-Ecto-sp13_S_contig9922:3925..4042Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9922 3926..4042 -
1681464252.9734564-CDS-Ecto-sp13_S_contig9922:4967..51101681464252.9734564-CDS-Ecto-sp13_S_contig9922:4967..5110Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9922 4968..5110 -
1681464252.9850197-CDS-Ecto-sp13_S_contig9922:5887..59841681464252.9850197-CDS-Ecto-sp13_S_contig9922:5887..5984Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9922 5888..5984 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9922.21567.1prot_Ecto-sp13_S_contig9922.21567.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9922 3926..5984 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9922.21567.1

>prot_Ecto-sp13_S_contig9922.21567.1 ID=prot_Ecto-sp13_S_contig9922.21567.1|Name=mRNA_Ecto-sp13_S_contig9922.21567.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
APQKCSAPQYVDHVMTWVEDQINKEDIFPTTPDATYPKDFKKTAMTIFKR
LFRVFAIIYCSHFDNIEQLGAAAHLNTSFKHFIFFALEFDLLARKEMDPL
EALVTPLVEEFSRGTMST*
back to top

mRNA from alignment at Ecto-sp13_S_contig9922:3926..5984-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9922.21567.1 ID=mRNA_Ecto-sp13_S_contig9922.21567.1|Name=mRNA_Ecto-sp13_S_contig9922.21567.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2059bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9922:3926..5984- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTCCGCAGAAATGCTCCGCCCCGCAGTACGTGGACCACGTGATGACGTG
GGTCGAGGACCAGATCAACAAGGAGGATATCTTCCCAACTACTCCCGGTA
AGAGACAGAGACAGAGAGAGAGAGAGAGGACCTTATCAAACACGCCACGT
TGTCATTGGAAACCTTTGCTGCAGTGCAGTACGCCGATACGCCGAGCCCC
CCGTCTGATGTCTGATAAGGGAAGGGATGACCCTTGTTTCGGAAAGGTCA
TGTACCTCTGCCCGAGCGTGTGTTGTGTATGTTTTATGTCTGTGCAAAGT
CAGTATGTACCTCTGCGAATGGATGCGAAGCTTGAACATCTTGTCTGGAA
ATTATCCATTGAAAAAATATCCTATTTTCAACCAGATACAACCAATGAAC
CTCGGTTGTCCAACCTGGAATTCCGCTTGCCGAAGCGCTGAAATTAGCCT
CCTCTTTTCCGCTACATAGTGAGATACCTCCCCGCTTTGTCGGAGGTCCC
TTCCCCGTAGGCTCTGGAACGGCAGTTGTGTTGTCTCTGCGTACGACAGA
GTGCGTGTAGAGAGAGAACGATCCCCGTGGTGTCACTGCTCACCAGCCGG
TCGAGTCGACAAGGACCAGCTCGTGTTTTACGTTATTTGCTATGATCTGG
ATACGTTTCGGTTTCAATTTTCATGATGTCCCTCAAGCCCCCTCCTGCAC
ACCATTCTCGTGCACGTAGAGCAACATATGTTTTGTCATCTGTCGATTGT
CGTGGACTCACAGCATTGAACAATGAATTTCTTGGTGACCATTTCGCGTT
TTTTCCTTTTTGTTGATGCCGTTCGCTGTGTTTGCTGTTCCGCGATGCTT
GCTTTTTGTCCTGTTGATCATTAGACGCGACTTACCCGAAAGACTTCAAG
AAGACGGCGATGACGATCTTCAAGCGCCTGTTCCGAGTGTTCGCCATCAT
CTACTGCAGCCATTTCGACAACATCGAGCAGCTTGGGGCGGCGGCGCATC
TCAACACTTCCTTCAAGGTAGGGGGCGACGTGACGTCACTAAACATGCCT
CCGTGTACAGGAGGGGGCGTTGTGTGTTAGTTTACAGTTAGCATCGACCC
CACTTACCGGCTCGCCGATGATAATTGGTCTAACGTGTAGCGGGACGAAA
CTGTCGAGTGTGTGCGGGTTCAGCACTTTGCACCAACGGCGTTAACCCGG
ATGACTTATGCCAGAAGTTTTCCCGCTGTCACCAGGCCACCACGAGGAAC
ACTTGTCAAATCAACCATTAGCCGAAGGGGCGAAATCTATCGTGAGAAGA
GAGGACGTCTACTTTTGATGGACGTGGCATAGTAACGACATTAGTAACAA
CTGTTTCGTAACGACGGGAATGCTCAAGTTCAGTGTGTCCCCATGTATTG
CTTGTAATGTAGCACTTCTTGCCCCCGTGGGCATGTATGCGTGATGCAGC
TTGTAATTTGGAATGGGCTGTGATTGATCCGTTCATTTCTTTTCACCAAC
AGCCGCTAAAAAGTTTGCTCTGCTACAAATATTGCGCCATCCTTTCTGTG
TATGGCTTCCGTCACGTCAAGTCATTTCGTATCCAACTCGCCCCCTCCCA
AGAGTAATGACACAGGTAGATATCCGACTCTGCACTTTTCAGCGTTCGAT
GAAGGCTTCTCGGAATCGATGTCCGATCCTGTAAATGCTATCCTGCGGAG
GCCGTTTGGGTGGTGCGCATGCGCGCGAAACGAACGAGTGCGTGGTAGAG
AATGGTTTACCGTAGCATGTTTCTGTTCATCGTCTCTGATCCGGTTTGCC
GTTTTTCTCTCTCTCTCCCCCTCCCTCTCTCTCTCTCTCTCTCTCTTTCT
CCCTCTCTCTCTCTCCCTCTCTATCTGTCCGTTCCTCTTTCTCGTCCTCC
AATTCCGTTATCTCTACATCCTTACCCTCCAAAACGAAACAGCACTTCAT
TTTCTTCGCGCTAGAGTTTGACCTGCTGGCGAGGAAAGAAATGGACCCGT
TGGAGGCGCTGGTTACCCCGCTCGTGGAGGAATTCAGCCGCGGGACAATG
TCTACATGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9922:3926..5984-

>mRNA_Ecto-sp13_S_contig9922.21567.1 ID=mRNA_Ecto-sp13_S_contig9922.21567.1|Name=mRNA_Ecto-sp13_S_contig9922.21567.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9922:3926..5984- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTCCGCAGAAATGCTCCGCCCCGCAGTACGTGGACCACGTGATGACGTG
GGTCGAGGACCAGATCAACAAGGAGGATATCTTCCCAACTACTCCCGACG
CGACTTACCCGAAAGACTTCAAGAAGACGGCGATGACGATCTTCAAGCGC
CTGTTCCGAGTGTTCGCCATCATCTACTGCAGCCATTTCGACAACATCGA
GCAGCTTGGGGCGGCGGCGCATCTCAACACTTCCTTCAAGCACTTCATTT
TCTTCGCGCTAGAGTTTGACCTGCTGGCGAGGAAAGAAATGGACCCGTTG
GAGGCGCTGGTTACCCCGCTCGTGGAGGAATTCAGCCGCGGGACAATGTC
TACATGA
back to top