mRNA_Ecto-sp13_S_contig12609.2156.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12609.2156.1
Unique NamemRNA_Ecto-sp13_S_contig12609.2156.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12609.2156.1 vs. uniprot
Match: D8LJQ3_ECTSI (Pho4 high affinity phosphate transporter, probable (IC) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ3_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 7.840e-46
Identity = 79/88 (89.77%), Postives = 83/88 (94.32%), Query Frame = 1
Query:    1 MSEALQPRILAPEASDHWLWIVVAGAFGSFLAASGIGANDVANAFATSVGARAVTLKQAIVLAGIFEFLGALLLGTHVTKAVRENIVN 264
            MSEALQPR+LAPEASD WLWIVV GAFGSFLAA GIGANDVANAF+TSVGARAVTLKQAIVLAG+FEFLGALLLG  VTKA+RENIVN
Sbjct:    1 MSEALQPRMLAPEASDQWLWIVVVGAFGSFLAAFGIGANDVANAFSTSVGARAVTLKQAIVLAGVFEFLGALLLGAPVTKAIRENIVN 88          
BLAST of mRNA_Ecto-sp13_S_contig12609.2156.1 vs. uniprot
Match: A0A6H5JIN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN4_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 4.930e-32
Identity = 56/81 (69.14%), Postives = 70/81 (86.42%), Query Frame = 1
Query:   22 RILAPEASDHWLWIVVAGAFGSFLAASGIGANDVANAFATSVGARAVTLKQAIVLAGIFEFLGALLLGTHVTKAVRENIVN 264
            RIL PE +D +LWI++ GAFG+F AA GIGANDVANAFATSVGA+A+T+KQA++LAGIFEFLGA+ LG+HVTK +R  I +
Sbjct:    9 RILVPETTDQFLWILIVGAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVILAGIFEFLGAVFLGSHVTKTIRSGIAD 89          
BLAST of mRNA_Ecto-sp13_S_contig12609.2156.1 vs. uniprot
Match: D7G5U7_ECTSI (High affinity phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U7_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.670e-31
Identity = 57/81 (70.37%), Postives = 72/81 (88.89%), Query Frame = 1
Query:   22 RILAPEASDHWLWIVVAGAFGSFLAASGIGANDVANAFATSVGARAVTLKQAIVLAGIFEFLGALLLGTHVTKAVRENIVN 264
            RILAPEA+D +LWI++  AFG+F AA GIGANDVANAFATSVGA+A+T+KQA+VLAG+FEFLGA+ LG+HVTK +R+ I +
Sbjct:   34 RILAPEATDQFLWILIVAAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAGVFEFLGAVFLGSHVTKTIRKGIAD 114          
BLAST of mRNA_Ecto-sp13_S_contig12609.2156.1 vs. uniprot
Match: D7G0K9_ECTSI (Phosphate transporter n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K9_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 5.360e-31
Identity = 60/81 (74.07%), Postives = 72/81 (88.89%), Query Frame = 1
Query:   22 RILAPEASDHWLWIVVAGAFGSFLAASGIGANDVANAFATSVGARAVTLKQAIVLAGIFEFLGALLLGTHVTKAVRENIVN 264
            RILAPE +DH+LWIV+ GAFG+F AA GIGANDVANAFATSVGA+A+T+KQA+VLAGIFEFLGA+ LG+HVTK +R  I +
Sbjct:    9 RILAPETTDHFLWIVIVGAFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAGIFEFLGAVFLGSHVTKTIRSGIAD 89          
BLAST of mRNA_Ecto-sp13_S_contig12609.2156.1 vs. uniprot
Match: A0A6H5JNE7_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE7_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 9.660e-29
Identity = 56/88 (63.64%), Postives = 71/88 (80.68%), Query Frame = 1
Query:    1 MSEALQPRILAPEASDHWLWIVVAGAFGSFLAASGIGANDVANAFATSVGARAVTLKQAIVLAGIFEFLGALLLGTHVTKAVRENIVN 264
            M    + RILAPE +D WLWI++  +FG+F AA GIGANDVANAFATSVGA+A+T+KQA+VLA IFEF GA+ LG+HVTK +R+ I +
Sbjct:    1 MDGVFEERILAPETTDQWLWILIVASFGAFFAAFGIGANDVANAFATSVGAKALTIKQAVVLAAIFEFAGAVFLGSHVTKTIRKGIAD 88          
BLAST of mRNA_Ecto-sp13_S_contig12609.2156.1 vs. uniprot
Match: D7FZJ7_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ7_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 6.200e-26
Identity = 53/77 (68.83%), Postives = 67/77 (87.01%), Query Frame = 1
Query:   22 RILAPEASDHWLWIVVAGAFGSFLAASGIGANDVANAFATSVGARAVTLKQAIVLAGIFEFLGALLLGTHVTKAVRE 252
            RILAP+ ++ +LWI++ G FG+F AA GIGANDVANAFATSVGA+A+TL+QA+VLAGIFEFLGA+ LG+HVT  +R 
Sbjct:    9 RILAPDTTNGFLWILIVGTFGAFFAAFGIGANDVANAFATSVGAKALTLRQAVVLAGIFEFLGAVFLGSHVTSTIRS 85          
BLAST of mRNA_Ecto-sp13_S_contig12609.2156.1 vs. uniprot
Match: D7FWT9_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT9_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.160e-24
Identity = 52/84 (61.90%), Postives = 66/84 (78.57%), Query Frame = 1
Query:   13 LQPRILAPEASDHWLWIVVAGAFGSFLAASGIGANDVANAFATSVGARAVTLKQAIVLAGIFEFLGALLLGTHVTKAVRENIVN 264
            L  RILAP  +  +LWIV+  + G+  AA GIGAND+ANAFATSVGARA+T+KQA+VLAG+FEFLGA+ LG+HV K +R  I +
Sbjct:    6 LDERILAPAVTSEFLWIVIVSSIGAVFAAFGIGANDLANAFATSVGARALTIKQAVVLAGVFEFLGAVFLGSHVAKTIRSGIAD 89          
BLAST of mRNA_Ecto-sp13_S_contig12609.2156.1 vs. uniprot
Match: D8LJQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ0_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 2.820e-24
Identity = 49/83 (59.04%), Postives = 64/83 (77.11%), Query Frame = 1
Query:   16 QPRILAPEASDHWLWIVVAGAFGSFLAASGIGANDVANAFATSVGARAVTLKQAIVLAGIFEFLGALLLGTHVTKAVRENIVN 264
            + R+LAPEA+  WLWIV   + G+  AA GIGANDVAN+FATSVG++A+TLK+A++LAGI EF GALLLG     A+ E+I +
Sbjct:    7 EQRVLAPEATGQWLWIVSVASLGALCAALGIGANDVANSFATSVGSKALTLKKALLLAGICEFFGALLLGRQAMTAISESIAD 89          
BLAST of mRNA_Ecto-sp13_S_contig12609.2156.1 vs. uniprot
Match: A0A6U1NDP7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NDP7_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.520e-22
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 1
Query:   46 DHWLWIVVAGAFGSFLAASGIGANDVANAFATSVGARAVTLKQAIVLAGIFEFLGALLLGTHVTKAVRENIVN 264
            D +LWIV+ G F +   A GIGANDVANAF+TSVGA+ +TLKQA++L GIFEFLGA L G+HVTK +R+ I +
Sbjct:    7 DDYLWIVIVGGFLAVFTAYGIGANDVANAFSTSVGAKTLTLKQAVILGGIFEFLGAFLFGSHVTKTIRKGIAD 79          
BLAST of mRNA_Ecto-sp13_S_contig12609.2156.1 vs. uniprot
Match: A0A7S2V1L4_9STRA (Phosphate transporter n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1L4_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 8.060e-21
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 1
Query:   46 DHWLWIVVAGAFGSFLAASGIGANDVANAFATSVGARAVTLKQAIVLAGIFEFLGALLLGTHVTKAVRENIVN 264
            D +LWIV+ G F +   A GIGANDVANAF+TSVGA+ +TLKQA++L GIFEFLGA L G+HVTK +R+ I +
Sbjct:    7 DDYLWIVIVGGFLAVFTAYGIGANDVANAFSTSVGAKTLTLKQAVILGGIFEFLGAFLFGSHVTKTIRKGIAD 79          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12609.2156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJQ3_ECTSI7.840e-4689.77Pho4 high affinity phosphate transporter, probable... [more]
A0A6H5JIN4_9PHAE4.930e-3269.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5U7_ECTSI1.670e-3170.37High affinity phosphate transporter n=1 Tax=Ectoca... [more]
D7G0K9_ECTSI5.360e-3174.07Phosphate transporter n=2 Tax=Ectocarpus siliculos... [more]
A0A6H5JNE7_9PHAE9.660e-2963.64Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7FZJ7_ECTSI6.200e-2668.83Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D7FWT9_ECTSI1.160e-2461.90Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
D8LJQ0_ECTSI2.820e-2459.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6U1NDP7_9STRA1.520e-2263.01Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2V1L4_9STRA8.060e-2163.01Phosphate transporter n=1 Tax=Fibrocapsa japonica ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12609contigEcto-sp13_S_contig12609:3651..4479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score151.4
Seed ortholog evalue2e-34
Seed eggNOG ortholog2880.D8LJQ3
Preferred namePHO89
Model size264
KEGG koko:K01280,ko:K03306,ko:K14640
KEGG TC2.A.20,2.A.20.2
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0005215,GO:0005315,GO:0005436,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006817,GO:0006820,GO:0008150,GO:0008324,GO:0012505,GO:0015075,GO:0015077,GO:0015081,GO:0015291,GO:0015293,GO:0015294,GO:0015318,GO:0015319,GO:0015370,GO:0015672,GO:0015698,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0035435,GO:0035725,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098655,GO:0098656,GO:0098660,GO:0098661,GO:0098662
Exons3
EggNOG free text desc.inorganic phosphate transmembrane transporter activity
EggNOG OGsCOG0306@1,KOG2493@2759
Ec32 ortholog descriptionPhosphate transporter
Ec32 orthologEc-17_002900.1
EC3.4.14.10
Cds size264
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko02000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462672.8896286-CDS-Ecto-sp13_S_contig12609:3650..37531681462672.8896286-CDS-Ecto-sp13_S_contig12609:3650..3753Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12609 3651..3753 +
1681462672.8998754-CDS-Ecto-sp13_S_contig12609:4093..41601681462672.8998754-CDS-Ecto-sp13_S_contig12609:4093..4160Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12609 4094..4160 +
1681462672.9074864-CDS-Ecto-sp13_S_contig12609:4385..44791681462672.9074864-CDS-Ecto-sp13_S_contig12609:4385..4479Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12609 4386..4479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12609.2156.1prot_Ecto-sp13_S_contig12609.2156.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12609 3651..4479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12609.2156.1

>prot_Ecto-sp13_S_contig12609.2156.1 ID=prot_Ecto-sp13_S_contig12609.2156.1|Name=mRNA_Ecto-sp13_S_contig12609.2156.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=88bp
MSEALQPRILAPEASDHWLWIVVAGAFGSFLAASGIGANDVANAFATSVG
ARAVTLKQAIVLAGIFEFLGALLLGTHVTKAVRENIVN
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mRNA from alignment at Ecto-sp13_S_contig12609:3651..4479+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12609.2156.1 ID=mRNA_Ecto-sp13_S_contig12609.2156.1|Name=mRNA_Ecto-sp13_S_contig12609.2156.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=829bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12609:3651..4479+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTGAAGCTCTCCAGCCGCGAATACTTGCCCCAGAGGCTTCGGATCA CTGGCTCTGGATCGTCGTCGCCGGAGCTTTCGGGAGCTTCTTGGCTGCTT CCGGTGCGTTGGTTGATGGCCTCCCGTGTGTTCATGCTGGTCATGTCGGA ATGCTGCAACGCTGTCTTTCTGAGCATACAACAACTGCTTTCAATTGTAG AGATGTTTTGCGGCAGGACCACCAAAGATACTCAACTTCCCAAACGGTAC CCCGCCACCCTAGCCACGCGGAGAAGGGGAATGTCGTGCAAGGGGGCATC CCATGCATGCTCGAAACACGCACGTTATAGAGAAGCAGATTCGCACAAGT TTGTCGGAAACTGGGTGTCCTCCAACTTCACCCGCCCTCATTTTTTTCCC TGCCGCTGATTTTTTTCTTGCGTCCTCGACCATGAATGTGTAGGCATAGG AGCCAACGACGTCGCGAACGCGTTTGCGACTTCCGTGGGAGCTCGGGCCG TCACTCTAAAGTATGTCGAAACATGGCGCATCTACAACCATTCGTCACAG TTTTCACCCAAGAGTTCATGGTGTGGAGCACACACCACGCAAGTAGGAAT TAAGGTCAGGTTGTTTTAAGATGCATGGTGTACAGCATGTATTTTCACAA TGTTTCGCCGTTCGTAATCGCACCACACACCAACGAACGTACTTCATTCT AGTACAACACGGTCGCCTCCCGACGGTTCGTGCAGGCAAGCGATAGTACT GGCGGGAATATTTGAATTCCTGGGCGCGCTACTCTTGGGCACACACGTGA CGAAGGCCGTCCGCGAGAACATCGTCAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12609:3651..4479+

>mRNA_Ecto-sp13_S_contig12609.2156.1 ID=mRNA_Ecto-sp13_S_contig12609.2156.1|Name=mRNA_Ecto-sp13_S_contig12609.2156.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12609:3651..4479+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTGAAGCTCTCCAGCCGCGAATACTTGCCCCAGAGGCTTCGGATCA
CTGGCTCTGGATCGTCGTCGCCGGAGCTTTCGGGAGCTTCTTGGCTGCTT
CCGGCATAGGAGCCAACGACGTCGCGAACGCGTTTGCGACTTCCGTGGGA
GCTCGGGCCGTCACTCTAAAGCAAGCGATAGTACTGGCGGGAATATTTGA
ATTCCTGGGCGCGCTACTCTTGGGCACACACGTGACGAAGGCCGTCCGCG
AGAACATCGTCAAC
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