mRNA_Ecto-sp13_S_contig9885.21525.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9885.21525.1
Unique NamemRNA_Ecto-sp13_S_contig9885.21525.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9885.21525.1 vs. uniprot
Match: D8LFH2_ECTSI (Putative 8-amino-7-oxononanoate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH2_ECTSI)

HSP 1 Score: 370 bits (951), Expect = 5.500e-127
Identity = 195/212 (91.98%), Postives = 201/212 (94.81%), Query Frame = 1
Query:    1 SFGKAFGAHGAVVVGSATLKEFLVNYARPLIYSTSLPLDSLACIRCAYLMQASADDRRTRVLQLADRFQSLLSDADVSSWAGGTAPPPPLDAKDIPRHLSPIQSVLIAGNERCLLVADSLRALGFDVRAIRKPTVAEGTERLRITLHAYNTDEEVESLARHIRRLAANRGDSADEARARTSEEDEGGTRASGRDFTRDSIVRLGESATRARL 636
            SFGKAFGAHGAVVVGSATLK+FLVNYARPLIYSTSLPLDSLACIRCAYLMQASADDRR RVL LAD FQSLLSDADV+ WAGGTAPPPPLDAKDIPRH SPIQSVLIAGNERCLLVADSLRALGFDVRAIRKPTVAEGTERLRITLHAYNTDEEVESLARHIRRL AN+G+SAD+ARARTSEEDEGGTRASG    RDSI+ LGESATRARL
Sbjct:  130 SFGKAFGAHGAVVVGSATLKDFLVNYARPLIYSTSLPLDSLACIRCAYLMQASADDRRKRVLDLADAFQSLLSDADVNRWAGGTAPPPPLDAKDIPRHRSPIQSVLIAGNERCLLVADSLRALGFDVRAIRKPTVAEGTERLRITLHAYNTDEEVESLARHIRRLTANKGNSADKARARTSEEDEGGTRASGGGLARDSILLLGESATRARL 341          
BLAST of mRNA_Ecto-sp13_S_contig9885.21525.1 vs. uniprot
Match: A0A6H5KGC3_9PHAE (Aminotran_1_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGC3_9PHAE)

HSP 1 Score: 364 bits (935), Expect = 2.520e-122
Identity = 193/212 (91.04%), Postives = 199/212 (93.87%), Query Frame = 1
Query:    1 SFGKAFGAHGAVVVGSATLKEFLVNYARPLIYSTSLPLDSLACIRCAYLMQASADDRRTRVLQLADRFQSLLSDADVSSWAGGTAPPPPLDAKDIPRHLSPIQSVLIAGNERCLLVADSLRALGFDVRAIRKPTVAEGTERLRITLHAYNTDEEVESLARHIRRLAANRGDSADEARARTSEEDEGGTRASGRDFTRDSIVRLGESATRARL 636
            SFGKAFGAHGAVVVGS TLK+FLVNYARPLIYSTSLPLDSLACIRCAYLMQA ADDRR RVL+LADRFQSLLSDADV+SWA GTAP PPLDAKDIPRH SPIQSVLIAGNERCLLVADSLRALGFDVRAIRKPTVAEGTERLRITLHAYNTDEEVESLARHIRRLAAN+G SAD+ARARTSE DEGGTRASG    RDSIV LGE+ATRARL
Sbjct:  288 SFGKAFGAHGAVVVGSTTLKDFLVNYARPLIYSTSLPLDSLACIRCAYLMQARADDRRRRVLELADRFQSLLSDADVNSWADGTAPSPPLDAKDIPRHRSPIQSVLIAGNERCLLVADSLRALGFDVRAIRKPTVAEGTERLRITLHAYNTDEEVESLARHIRRLAANKGSSADKARARTSEGDEGGTRASGGALARDSIVLLGEAATRARL 499          
BLAST of mRNA_Ecto-sp13_S_contig9885.21525.1 vs. uniprot
Match: A0A835YWE3_9STRA (Pyridoxal phosphate-dependent transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWE3_9STRA)

HSP 1 Score: 165 bits (417), Expect = 3.160e-45
Identity = 93/167 (55.69%), Postives = 111/167 (66.47%), Query Frame = 1
Query:    1 SFGKAFGAHGAVVVGSATLKEFLVNYARPLIYSTSLPLDSLACIRCAYLMQASADDRRTRVLQLADRFQSLLSDADVSSWAGGTAPPPPLDAKDIPRHLSPIQSVLIAGNERCLLVADSLRALGFDVRAIRKPTVAEGTERLRITLHAYNTDEEVESLARHIRRLAA 501
            +FGKA G HGA V GSATL++FL+NYARPLIYSTSLP+ SLA IRC+Y MQ      R+ VL L   F++ L    V+     T   PPL   D+    SPIQ+VL+ GNER + VAD LR  GFDVR IRKPTV EGTERLRI +HA+N+  +V  L  HIR   A
Sbjct:  256 TFGKALGVHGAAVFGSATLRKFLINYARPLIYSTSLPMHSLAAIRCSYDMQRIMHAARSHVLNLVAIFRAEL----VAPSEDDT---PPLSPSDLVESTSPIQAVLVPGNERAIKVADLLREHGFDVRPIRKPTVPEGTERLRICIHAHNSVTQVRDLIHHIRAFKA 415          
BLAST of mRNA_Ecto-sp13_S_contig9885.21525.1 vs. uniprot
Match: A0A1Y2CK47_9FUNG (PLP-dependent transferase n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CK47_9FUNG)

HSP 1 Score: 136 bits (343), Expect = 1.200e-34
Identity = 77/163 (47.24%), Postives = 107/163 (65.64%), Query Frame = 1
Query:    1 SFGKAFGAHGAVVVGSATLKEFLVNYARPLIYSTSLPLDSLACIRCAY-LMQASADDRRTRVLQLADRFQSLLSDADVSSWAGGTAPPPPLDAKDIPRHLSPIQSVLIAGNERCLLVADSLRALGFDVRAIRKPTVAEGTERLRITLHAYNTDEEVESLARHI 486
            +FGKA GAHGAVV+GS+TL+EFLVNYARPL+YSTSLP+ SL  IRCAY  MQ  A++ + ++ Q    F++ L     S           +++ D    L+ IQ +++ GN+R   V   L++ G+DVR IR PTV +G+ERLRI LHA+N+ +E+  L R I
Sbjct:  257 TFGKAVGAHGAVVLGSSTLREFLVNYARPLVYSTSLPMHSLIAIRCAYEFMQEEAENLQQKLTQTIKHFRAQLKFILPSG----------IESID---SLTAIQGIIVPGNKRVSQVCSYLQSKGYDVRPIRSPTVPKGSERLRICLHAHNSVDEITGLIREI 406          
BLAST of mRNA_Ecto-sp13_S_contig9885.21525.1 vs. uniprot
Match: A0A7V5M321_9BACT (Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme n=2 Tax=cellular organisms TaxID=131567 RepID=A0A7V5M321_9BACT)

HSP 1 Score: 132 bits (333), Expect = 3.850e-33
Identity = 76/164 (46.34%), Postives = 102/164 (62.20%), Query Frame = 1
Query:    1 SFGKAFGAHGAVVVGSATLKEFLVNYARPLIYSTSLPLDSLACIRCAYLMQAS--ADDRRTRVLQLADRFQSLLSDADVSSWAGGTAPPPPLDAKDIPRHLSPIQSVLIAGNERCLLVADSLRALGFDVRAIRKPTVAEGTERLRITLHAYNTDEEVESLARHI 486
            +FGKAFG HGA V+G+  L ++L+NYARPLIYSTSLPL SL  +  AY + A+  A  RR  + +    F SL    D+ S       PPPL  ++     SPIQ+++I GNE C+ VA+ LR  GFD R IR PTV  G ER+R+ LHA+NT E + +  + +
Sbjct:  246 TFGKAFGLHGAAVLGAQPLLQYLLNYARPLIYSTSLPLHSLCAVSAAYRLMATETAAHRRKLLWEAVRMFHSLTR--DLRSRCPQL--PPPLVNRE-----SPIQAIIIPGNENCVFVANELRQRGFDARPIRYPTVERGAERIRVVLHAHNTPEAINAFVQAL 400          
BLAST of mRNA_Ecto-sp13_S_contig9885.21525.1 vs. uniprot
Match: A0A0L0HFA7_SPIPD (Aminotran_1_2 domain-containing protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HFA7_SPIPD)

HSP 1 Score: 130 bits (327), Expect = 2.000e-32
Identity = 79/165 (47.88%), Postives = 108/165 (65.45%), Query Frame = 1
Query:    1 SFGKAFGAHGAVVVGSATLKEFLVNYARPLIYSTSLPLDSLACIRCAY--LMQASADDRRTRVLQLADRFQSLLSDADVSSWAGGTAPPPPLDAKDIPRHLSPIQSVLIAGNERCLLVADSLRALGFDVRAIRKPTVAEGTERLRITLHAYNTDEEVESLARHIR 489
            +FGKA G+HGAVV+GS TL+E+LVNYARPL+YST +P   L  IRC+Y  LM+ +A   +TR+ +L   F+  +          GT P     A  +P   S IQ V++AGN R + +A  ++A GFDVR IR PTV +G+ERLR+ LHA+NT ++V +LA  IR
Sbjct:  244 TFGKAIGSHGAVVLGSPTLREYLVNYARPLVYSTMIPYHGLVAIRCSYEYLMEEAAG-LQTRMTELVQVFRQSV----------GTLPS---GAALLPSD-SMIQGVVLAGNARVVALATKVQAKGFDVRPIRSPTVPKGSERLRVCLHAHNTRQQVLALAAAIR 393          
BLAST of mRNA_Ecto-sp13_S_contig9885.21525.1 vs. uniprot
Match: A0A1Q9CLZ4_SYMMI (8-amino-7-oxononanoate synthase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9CLZ4_SYMMI)

HSP 1 Score: 129 bits (324), Expect = 6.980e-31
Identity = 80/161 (49.69%), Postives = 99/161 (61.49%), Query Frame = 1
Query:    1 SFGKAFGAHGAVVVGSATLKEFLVNYARPLIYSTSLPLDSLACIRCAY-LMQASADDRRTRVLQLADRFQSLLSDADVSSWAGGTAPPPPLDAKDIPRHLSPIQSVLIAGNERCLLVADSLRALG--FDVRAIRKPTVAEGTERLRITLHAYNTDEEVESL 474
            +FGKA G HGA VVG   L+E+L+NYA PL+YSTSLPL SLA IRCAY  M+  A  R+  V +L   FQ  L+D           PP  +   D     SPIQ +++ GN  C+ VA   R LG  FDV  IR PTV  GTERLRI LHA+NT+++V +L
Sbjct:  904 TFGKALGVHGAAVVGPRVLREYLLNYAWPLVYSTSLPLHSLAAIRCAYAFMRREASKRQEHVRRLIQIFQKRLADL----------PPERVLQSD-----SPIQGLIVPGNAACVAVA---RRLGDRFDVLPIRSPTVPAGTERLRIILHAHNTEDQVHAL 1046          
BLAST of mRNA_Ecto-sp13_S_contig9885.21525.1 vs. uniprot
Match: A0A7S1MHM7_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MHM7_ALECA)

HSP 1 Score: 126 bits (316), Expect = 7.190e-31
Identity = 78/172 (45.35%), Postives = 102/172 (59.30%), Query Frame = 1
Query:    1 SFGKAFGAHGAVVVGSATLKEFLVNYARPLIYSTSLPLDSLACIRCAY-LMQASADDRRTRVLQLADRFQSLLSDADVSSWAGGTAPPPPLDAKDIPRHLSPIQSVLIAGNERCLLVADSLRALGFDVRAIRKPTVAEGTERLRITLHAYNTDEEVESLARHIRRLAANRGD 513
            +FGKA G HGA V+G   L+E+L+NYARPLIYSTSLP  SL  +RCAY LMQ  A  R+ ++ +L   F               +A  PP  A   P   SPIQ+V++ GN+ C+  A  L+  GF V  IR PTV  G+ERLRI LH +NT E+V++L   I  + A + D
Sbjct:  241 TFGKALGVHGAAVLGPQVLREYLINYARPLIYSTSLPTHSLVSVRCAYALMQREATQRQRQLQRLLAAFHRR------------SARLPPGRALASP---SPIQAVVVPGNDACVAAAQLLQRRGFAVLPIRSPTVPAGSERLRIILHCHNTCEQVDALMDAIEDVLAPKPD 397          
BLAST of mRNA_Ecto-sp13_S_contig9885.21525.1 vs. uniprot
Match: A0A7S2IS35_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2IS35_9DINO)

HSP 1 Score: 125 bits (314), Expect = 1.970e-30
Identity = 75/159 (47.17%), Postives = 96/159 (60.38%), Query Frame = 1
Query:    1 SFGKAFGAHGAVVVGSATLKEFLVNYARPLIYSTSLPLDSLACIRCAY-LMQASADDRRTRVLQLADRFQSLLSDADVSSWAGGTAPPPPLDAKDIPRHLSPIQSVLIAGNERCLLVADSLRALGFDVRAIRKPTVAEGTERLRITLHAYNTDEEVESL 474
            +FGK  G HGA VVG   + ++L+NYARPLIYSTSLP+ S+A IRCAY LM+ SA +R+  +  L + FQ+ L          G A   P          SPIQ +++ GN  C+  A  L+ LGF V  IR PTV  GTERLRI LH +N+ EEV +L
Sbjct:  246 TFGKGLGVHGAAVVGPRVVYDYLINYARPLIYSTSLPVHSVASIRCAYALMRRSAAERQAHLRGLIELFQTRLR-----LLPRGCALESP----------SPIQGIIVPGNAACVAAARRLQGLGFHVLPIRSPTVPAGTERLRIILHHHNSREEVGAL 389          
BLAST of mRNA_Ecto-sp13_S_contig9885.21525.1 vs. uniprot
Match: A0A5B8V4D3_9BACT (8-amino-7-oxononanoate synthase n=1 Tax=Panacibacter ginsenosidivorans TaxID=1813871 RepID=A0A5B8V4D3_9BACT)

HSP 1 Score: 124 bits (310), Expect = 2.840e-30
Identity = 69/163 (42.33%), Postives = 98/163 (60.12%), Query Frame = 1
Query:    1 SFGKAFGAHGAVVVGSATLKEFLVNYARPLIYSTSLPLDSLACIRCAYLMQASADDRRTRVLQLADRFQSLLSDADVSSWAGGTAPPPPLDAKDIPRHLSPIQSVLIAGNERCLLVADSLRALGFDVRAIRKPTVAEGTERLRITLHAYNTDEEVESLARHIR 489
            +FGKA G HGAVV+GS  LK++L+N+AR  IYSTSLP  S+ACI+ +Y +    ++ R  + ++ + FQ   +D     +   T                P+Q V+I GN+    +ADSL+A   DVRAI  PTV +G ERLRI LHA+NT EE++ L  H++
Sbjct:  221 TFGKAVGCHGAVVLGSQQLKDYLINFARSFIYSTSLPEHSIACIKASYTLFPLMNNERAHLKKMIEHFQQ--ADIGYKKFVSDT----------------PVQVVVIPGNDAVKNIADSLQANKLDVRAILYPTVPKGAERLRIVLHAFNTIEELDMLISHLK 365          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9885.21525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFH2_ECTSI5.500e-12791.98Putative 8-amino-7-oxononanoate synthase n=1 Tax=E... [more]
A0A6H5KGC3_9PHAE2.520e-12291.04Aminotran_1_2 domain-containing protein n=1 Tax=Ec... [more]
A0A835YWE3_9STRA3.160e-4555.69Pyridoxal phosphate-dependent transferase n=1 Tax=... [more]
A0A1Y2CK47_9FUNG1.200e-3447.24PLP-dependent transferase n=1 Tax=Rhizoclosmatium ... [more]
A0A7V5M321_9BACT3.850e-3346.34Aminotransferase class I/II-fold pyridoxal phospha... [more]
A0A0L0HFA7_SPIPD2.000e-3247.88Aminotran_1_2 domain-containing protein n=2 Tax=Sp... [more]
A0A1Q9CLZ4_SYMMI6.980e-3149.698-amino-7-oxononanoate synthase n=1 Tax=Symbiodini... [more]
A0A7S1MHM7_ALECA7.190e-3145.35Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A7S2IS35_9DINO1.970e-3047.17Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
A0A5B8V4D3_9BACT2.840e-3042.338-amino-7-oxononanoate synthase n=1 Tax=Panacibact... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9885contigEcto-sp13_S_contig9885:2..2686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score375.2
Seed ortholog evalue2.1e-101
Seed eggNOG ortholog2880.D8LFH2
Model size639
KEGG rclassRC00004,RC00039,RC02725
KEGG koko:K00652
KEGG ReactionR03210,R10124
KEGG Pathwayko00780,ko01100,map00780,map01100
KEGG ModuleM00123,M00573,M00577
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.glycine C-acetyltransferase activity
EggNOG OGsCOG0156@1,KOG1359@2759
EC2.3.1.47
Cds size639
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464249.615147-CDS-Ecto-sp13_S_contig9885:1..1201681464249.615147-CDS-Ecto-sp13_S_contig9885:1..120Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9885 2..120 +
1681464249.6348293-CDS-Ecto-sp13_S_contig9885:671..7611681464249.6348293-CDS-Ecto-sp13_S_contig9885:671..761Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9885 672..761 +
1681464249.6485846-CDS-Ecto-sp13_S_contig9885:1318..15711681464249.6485846-CDS-Ecto-sp13_S_contig9885:1318..1571Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9885 1319..1571 +
1681464249.6600156-CDS-Ecto-sp13_S_contig9885:2509..26861681464249.6600156-CDS-Ecto-sp13_S_contig9885:2509..2686Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9885 2510..2686 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9885.21525.1prot_Ecto-sp13_S_contig9885.21525.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9885 2..2686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9885.21525.1

>prot_Ecto-sp13_S_contig9885.21525.1 ID=prot_Ecto-sp13_S_contig9885.21525.1|Name=mRNA_Ecto-sp13_S_contig9885.21525.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=213bp
SFGKAFGAHGAVVVGSATLKEFLVNYARPLIYSTSLPLDSLACIRCAYLM
QASADDRRTRVLQLADRFQSLLSDADVSSWAGGTAPPPPLDAKDIPRHLS
PIQSVLIAGNERCLLVADSLRALGFDVRAIRKPTVAEGTERLRITLHAYN
TDEEVESLARHIRRLAANRGDSADEARARTSEEDEGGTRASGRDFTRDSI
VRLGESATRARL*
back to top

mRNA from alignment at Ecto-sp13_S_contig9885:2..2686+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9885.21525.1 ID=mRNA_Ecto-sp13_S_contig9885.21525.1|Name=mRNA_Ecto-sp13_S_contig9885.21525.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2685bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9885:2..2686+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTTCGGGAAGGCCTTCGGCGCTCACGGCGCGGTGGTGGTCGGCAGCGC AACGCTCAAGGAATTCTTGGTCAACTACGCTCGGCCGCTCATCTACTCCA CGTCTTTGCCACTAGATAGGTGAGAACACTGTAGGCGTTGTTTTCTTTAT GTTGTTGTTATGTGTGTCGTGCTTTGGTATTCCCGCGTACGGGCATGTGC CCGCAACAGCGCCAGCACAAGGACTTCGCGTAGAATTTGTTGTTATTTTG CAGGTTTTGGTGTTGCAAAAGTTACCACTTGTGATTCGCTTTCATTGGCG TTCGTTTGCTGGAGTTGGGGCATGACCCTCTGCGCGTTGAAAGGAGCGGG GAAGTTCGAGCTGATTTGGGCCGGACGCCGTTCAGACCACGACTGGTTTA CGGCACGACCTTTGTTGTCCACGCCCGAGCGGAGGCAGAACAGTCACAAG GATCTGGTGTTGCTTTTCGTGATTATATTTCTTCGACACCATATGGATAC CCGCCACCCCATCCGCCGGTGTGTCGACGTGCTCGATGTGTCAACTGCCT TGTCCGGAGCCGCCAAGCACCTGGCCGCTATGCGGTAGCTAGCTGTTGCT GATAGAGGAGGCCGACCCCCCCCCCCCGCCTCCCGTCCCTGTTACCCACT GCGTTTCCCCCTCCCGAAAGTTTGGCGTGCATCCGATGCGCGTACCTGAT GCAAGCGAGTGCCGACGACCGGCGAACAAGAGTTCTGCAGTTGGCGGATA GATTTCAAAGGTGAGCACAATTCTTTTGGTCCTGCGCTTCAAACACCCCT CCACGGAATCTTTGGGGGGGGGCACATCATGTTGGGACGTATATGTGACC CCCCCCGCCTGATATGTGCCCCCCCCCGCCCCGCTCTGCCGCTCTGCCAC ATGGATACTCCTAGATCAGAGGCGGACAGAGGGGCAGAGAGACAGTTGGC TCTGCGTACGTGTCTTCACCTGAAGCAGTAGGGGTCTCGAGTCAAGCTTC CTTCTCTTTTGATCTCCGACGGAGCGTTCTTTCTCTCCATCTAGTGGGGA CGTGGGGGGGATTATTTCGCTCGGCCCCATCCCATCGATCGGAGGCCGTA AGGCGGTGGGAGCGAGTTGACTGTCTTGAGAGCGAGCATACCCATCCCTG ACACACTCCTCTCACCTCCGACCCAGCAATCGCACACCCACCCGTAACCG CTTCCTCTCAACTCCGACCCACCCTTAGCGCACCCGTCCCCAAGCCCCCT CTCTCAGCTCCGCCTCACCGCCTACTGCTAACCCATTCCTCCCACCCTCC CCATTGGGAACGCGCAGCCTCCTTAGCGATGCCGACGTCAGCAGTTGGGC CGGCGGCACCGCTCCCCCACCCCCGTTGGACGCCAAGGACATCCCGCGCC ACCTGTCGCCGATCCAGTCCGTCCTGATCGCAGGAAACGAGAGGTGCTTG CTCGTGGCTGACTCTCTCCGTGCTTTGGGCTTCGACGTGCGGGCGATCCG GAAGCCCACTGTCGCGGAGGGGACGGAGCGGCTGAGGATCACGCTCCACG CGTACAACACTGATGAGGAGGTGGGTGGTCGCACTTGAGTTCACGATGCA GATGGAGTTCCTCGCTCCGTGCTTCTGGCTGCTGTAGGGTGCGCAAGATG CCACACCCAATGGTGGGCCGATTTTTAAAGCCACGGCGAAGAGGATGCCA AAAGTGATACGTTTCCGAAAGCTCTCGACTATTATAGACGAATCCAACGT CGCCATTTTGGTCATCGCTACTGTTTTTGCTGGGGAGGAAATCTGTGAAG GTGGCCTCAAATTGTCTCTTCGGGATGTTGCCACAGATTAGATAGAGCCA GTGGAACATGCTAAGACCAAAAACAAGTACAGAAGGCCCGCTGTCTCCTC TCTCTCTCTCTGCGACATCCCATGCTACTGTACATTTGCTCTTACCGGTG ATCGATACCGGGCCCTTTCGCATCACACATCCTACGATAAGCTGGAGCCA CAGCGAAAGCCTGGAGACCCCCTTCTCATATACGCCAAACAGATATGAGA CGGAGGTCTCCAGGCTCGTGCTGTGGCTCCAGTTTCTCGTGGGATGTGTG GCCCGAGAGGGCGCCCTGGTATCAATCACTGGTAAGAGAGGACGAGCAGA AACGGTAACGTGGGTTGTCGCAAGAGAGAGAGGGGGCAACTGGCCTGCTG CGCGTTCAGCGTGTTCCATTGGCTCTAATCTGTGGCAACACTCCGAAGGT ACGAAGGTCCCCGACGGGTTGCCTGACGTCATCATCCACGAGACAAGCTG AGTGTGACGTGCACAACTCGAGCTTAAACGATCTGCCCGGGGCGTGTGGC ATCTTATGCGACCCAAGGTAGCAGTAACTCGTCCCTCCTGACGTGCTCAA GTAGAAAATAGGAAAAGTGAAGAGCGCCCCGAGAGGCCGTGAACGTTCTT CCCCGCTTCGCTGTGGTCGTTTTGTTCGCGCCTTGTCGTTGGTTGGCCCA TTCGGCAGGTCGAGTCCCTGGCGCGGCACATCCGGCGGCTGGCAGCGAAC AGAGGCGATAGTGCCGACGAAGCTCGTGCGAGGACCTCGGAGGAAGATGA AGGGGGCACGAGGGCAAGCGGGAGGGATTTTACTAGAGATTCGATTGTGC GTCTGGGAGAGTCTGCTACTCGAGCTCGACTGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9885:2..2686+

>mRNA_Ecto-sp13_S_contig9885.21525.1 ID=mRNA_Ecto-sp13_S_contig9885.21525.1|Name=mRNA_Ecto-sp13_S_contig9885.21525.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=639bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9885:2..2686+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTTCGGGAAGGCCTTCGGCGCTCACGGCGCGGTGGTGGTCGGCAGCGC
AACGCTCAAGGAATTCTTGGTCAACTACGCTCGGCCGCTCATCTACTCCA
CGTCTTTGCCACTAGATAGTTTGGCGTGCATCCGATGCGCGTACCTGATG
CAAGCGAGTGCCGACGACCGGCGAACAAGAGTTCTGCAGTTGGCGGATAG
ATTTCAAAGCCTCCTTAGCGATGCCGACGTCAGCAGTTGGGCCGGCGGCA
CCGCTCCCCCACCCCCGTTGGACGCCAAGGACATCCCGCGCCACCTGTCG
CCGATCCAGTCCGTCCTGATCGCAGGAAACGAGAGGTGCTTGCTCGTGGC
TGACTCTCTCCGTGCTTTGGGCTTCGACGTGCGGGCGATCCGGAAGCCCA
CTGTCGCGGAGGGGACGGAGCGGCTGAGGATCACGCTCCACGCGTACAAC
ACTGATGAGGAGGTCGAGTCCCTGGCGCGGCACATCCGGCGGCTGGCAGC
GAACAGAGGCGATAGTGCCGACGAAGCTCGTGCGAGGACCTCGGAGGAAG
ATGAAGGGGGCACGAGGGCAAGCGGGAGGGATTTTACTAGAGATTCGATT
GTGCGTCTGGGAGAGTCTGCTACTCGAGCTCGACTGTGA
back to top