mRNA_Ecto-sp13_S_contig9862.21504.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig9862.21504.1
Unique Name	mRNA_Ecto-sp13_S_contig9862.21504.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig9862.21504.1 vs. uniprot
Match: A0A7S1U3I3_9STRA (Tubulin beta chain (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3I3_9STRA)

HSP 1 Score: 286 bits (733), Expect = 6.760e-96
Identity = 134/142 (94.37%), Postives = 139/142 (97.89%), Query Frame = 1

Query:    1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVR 426
            QIG+KFWEVISDEHG+DPTG YHGDSDLQLERIN Y+NEATGGRYVPRAILMDLEPGTMDSVR+GPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCD LQGFQLTHSMGGGTGAGMGTLLISK+R
Sbjct:   30 QIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSMGGGTGAGMGTLLISKIR 171

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BLAST of mRNA_Ecto-sp13_S_contig9862.21504.1 vs. uniprot
Match: TBB5_ECTVR (Tubulin beta-5 chain n=44 Tax=Eukaryota TaxID=2759 RepID=TBB5_ECTVR)

HSP 1 Score: 294 bits (753), Expect = 8.980e-96
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1

Query:    1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVR 426
            QIGSKFWEVISDEHGIDPTG YHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVR+GPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVR
Sbjct:   15 QIGSKFWEVISDEHGIDPTGSYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVR 156

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BLAST of mRNA_Ecto-sp13_S_contig9862.21504.1 vs. uniprot
Match: A0A6A0AGU3_HAELA (Tubulin beta chain (Fragment) n=3 Tax=Eukaryota TaxID=2759 RepID=A0A6A0AGU3_HAELA)

HSP 1 Score: 285 bits (728), Expect = 1.840e-95
Identity = 132/142 (92.96%), Postives = 139/142 (97.89%), Query Frame = 1

Query:    1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVR 426
            QIG+KFWEV+SDEHGIDPTG YHGDSDLQLERIN YFNEATGGRYVPRAILMDLEPGTMDSVRSGPFGQ+FRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCD LQGFQ+THS+GGGTG+GMGTLLISK+R
Sbjct:   15 QIGAKFWEVVSDEHGIDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRSGPFGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQVTHSLGGGTGSGMGTLLISKIR 156

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BLAST of mRNA_Ecto-sp13_S_contig9862.21504.1 vs. uniprot
Match: A0A7R9UP53_DIALT (Tubulin beta chain (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UP53_DIALT)

HSP 1 Score: 283 bits (725), Expect = 3.250e-95
Identity = 131/142 (92.25%), Postives = 139/142 (97.89%), Query Frame = 1

Query:    1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVR 426
            QIG+KFWEVISDEHG+DPTG YHGDSDLQLERIN YFNEATGGRYVPRAILMDLEPGTMDSVRSGPFGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELID+VLDVVRKEAESCD LQGFQ+THSMGGGTG+GMGTLLISK+R
Sbjct:   29 QIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAESCDCLQGFQITHSMGGGTGSGMGTLLISKIR 170

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BLAST of mRNA_Ecto-sp13_S_contig9862.21504.1 vs. uniprot
Match: A0A816GJ29_ADIRI (Tubulin beta chain n=2 Tax=Opisthokonta TaxID=33154 RepID=A0A816GJ29_ADIRI)

HSP 1 Score: 281 bits (719), Expect = 1.210e-94
Identity = 130/142 (91.55%), Postives = 138/142 (97.18%), Query Frame = 1

Query:    1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVR 426
            QIGSKFWEVISDEHGIDPTG YHGDSDLQLERIN YFNEA GG+YVPRA+L+DLEPGTMDSVRSGPFGQLFRPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVVRKEAESCD LQGFQLTHS+GGGTG+GMGTLLISK+R
Sbjct:   15 QIGSKFWEVISDEHGIDPTGTYHGDSDLQLERINVYFNEAAGGKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIR 156

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BLAST of mRNA_Ecto-sp13_S_contig9862.21504.1 vs. uniprot
Match: A0A7S1NSD1_9EUGL (Tubulin beta chain (Fragment) n=2 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NSD1_9EUGL)

HSP 1 Score: 282 bits (721), Expect = 1.280e-94
Identity = 130/142 (91.55%), Postives = 139/142 (97.89%), Query Frame = 1

Query:    1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVR 426
            QIGSKFWEV+SDEHG+DPTG Y+GDSDLQLERIN Y+NEATGGRYVPRAILMDLEPGTMDSVR+GPFGQ+FRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCD LQGFQ+THSMGGGTG+GMGTLLISK+R
Sbjct:   21 QIGSKFWEVVSDEHGVDPTGTYNGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQMTHSMGGGTGSGMGTLLISKIR 162

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BLAST of mRNA_Ecto-sp13_S_contig9862.21504.1 vs. uniprot
Match: A0A813CFH2_9DINO (Tubulin beta chain (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CFH2_9DINO)

HSP 1 Score: 281 bits (720), Expect = 2.160e-94
Identity = 131/142 (92.25%), Postives = 137/142 (96.48%), Query Frame = 1

Query:    1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVR 426
            QIG+KFWEVI+DEHGIDPTG YHGDSDLQLERIN YFNEATGGRYVPRA+LMDLEPGTMDSVR+GPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAE CD LQGFQL HS+GGGTGAGMGTLL+SKVR
Sbjct:   46 QIGAKFWEVIADEHGIDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQLCHSLGGGTGAGMGTLLVSKVR 187

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BLAST of mRNA_Ecto-sp13_S_contig9862.21504.1 vs. uniprot
Match: A0A078B8F6_STYLE (Tubulin beta chain n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078B8F6_STYLE)

HSP 1 Score: 281 bits (718), Expect = 2.270e-94
Identity = 130/142 (91.55%), Postives = 138/142 (97.18%), Query Frame = 1

Query:    1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVR 426
            QIG+KFWEVISDEHGIDPTG YHGDSDLQLERIN Y+NEATGGRYVPRA+LMDLEPGTMDSVR+GPFGQLFRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CD LQGFQ+THS+GGGTG+GMGTLLISKVR
Sbjct:   15 QIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKVR 156

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BLAST of mRNA_Ecto-sp13_S_contig9862.21504.1 vs. uniprot
Match: A0C5P2_PARTE (Tubulin beta chain n=2 Tax=Alveolata TaxID=33630 RepID=A0C5P2_PARTE)

HSP 1 Score: 283 bits (723), Expect = 2.660e-94
Identity = 132/142 (92.96%), Postives = 138/142 (97.18%), Query Frame = 1

Query:    1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVR 426
            QIG+KFWEVISDEHGIDPTG YHGDSDLQLERIN Y+NEATGGRYVPRAILMDLEPGTMDSVR+GPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAE CD LQGFQ+THS+GGGTG+GMGTLLISKVR
Sbjct:   15 QIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKVR 156

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BLAST of mRNA_Ecto-sp13_S_contig9862.21504.1 vs. uniprot
Match: A0A813BU98_9DINO (Tubulin beta chain n=5 Tax=Dinophyceae TaxID=2864 RepID=A0A813BU98_9DINO)

HSP 1 Score: 280 bits (717), Expect = 2.800e-94
Identity = 133/149 (89.26%), Postives = 138/149 (92.62%), Query Frame = 1

Query:    1 QIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVRRRGYRLG 447
            QIG+KFWEVI+DEHGIDPTG YHGDSDLQLERIN YFNEATGGRYVPRA+LMDLEPGTMDSVR+GPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAE CD LQGFQL HS+GGGTGAGMGTLLISKV     R G
Sbjct:   15 QIGAKFWEVIADEHGIDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQLCHSLGGGTGAGMGTLLISKVGAMQERAG 163

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig9862.21504.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig9862.21504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7S1U3I3_9STRA	6.760e-96	94.37	Tubulin beta chain (Fragment) n=2 Tax=Phaeomonas p...	[more]
TBB5_ECTVR	8.980e-96	98.59	Tubulin beta-5 chain n=44 Tax=Eukaryota TaxID=2759...	[more]
A0A6A0AGU3_HAELA	1.840e-95	92.96	Tubulin beta chain (Fragment) n=3 Tax=Eukaryota Ta...	[more]
A0A7R9UP53_DIALT	3.250e-95	92.25	Tubulin beta chain (Fragment) n=1 Tax=Diacronema l...	[more]
A0A816GJ29_ADIRI	1.210e-94	91.55	Tubulin beta chain n=2 Tax=Opisthokonta TaxID=3315...	[more]
A0A7S1NSD1_9EUGL	1.280e-94	91.55	Tubulin beta chain (Fragment) n=2 Tax=Eutreptiella...	[more]
A0A813CFH2_9DINO	2.160e-94	92.25	Tubulin beta chain (Fragment) n=1 Tax=Symbiodinium...	[more]
A0A078B8F6_STYLE	2.270e-94	91.55	Tubulin beta chain n=1 Tax=Stylonychia lemnae TaxI...	[more]
A0C5P2_PARTE	2.660e-94	92.96	Tubulin beta chain n=2 Tax=Alveolata TaxID=33630 R...	[more]
A0A813BU98_9DINO	2.800e-94	89.26	Tubulin beta chain n=5 Tax=Dinophyceae TaxID=2864 ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig9862	contig	Ecto-sp13_S_contig9862:4593..5184 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	186.8
Seed ortholog evalue	5.7e-45
Seed eggNOG ortholog	2880.D7FNQ3
Model size	592
KEGG ko	ko:K07375
KEGG Pathway	ko04145,ko04540,ko05130,map04145,map04540,map05130
Hectar predicted targeting category	other localisation
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044464
Exons	1
EggNOG free text desc.	structural constituent of cytoskeleton
EggNOG OGs	COG5023@1,KOG1375@2759
Cds size	348
COG Functional cat.	Z
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03036,ko04147,ko04812

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464248.1532693-UTR-Ecto-sp13_S_contig9862:4592..4745	1681464248.1532693-UTR-Ecto-sp13_S_contig9862:4592..4745	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig9862 4593..4745 +
1681464248.182153-UTR-Ecto-sp13_S_contig9862:5093..5184	1681464248.182153-UTR-Ecto-sp13_S_contig9862:5093..5184	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig9862 5094..5184 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464248.1673372-CDS-Ecto-sp13_S_contig9862:4745..5093	1681464248.1673372-CDS-Ecto-sp13_S_contig9862:4745..5093	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig9862 4746..5093 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig9862.21504.1	prot_Ecto-sp13_S_contig9862.21504.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig9862 4746..5093 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig9862:4593..5184+
coding sequence from alignment at Ecto-sp13_S_contig9862:4593..5184+

protein sequence of mRNA_Ecto-sp13_S_contig9862.21504.1

>prot_Ecto-sp13_S_contig9862.21504.1 ID=prot_Ecto-sp13_S_contig9862.21504.1|Name=mRNA_Ecto-sp13_S_contig9862.21504.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
MDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDS
VLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVRRRGYRLGCG
RAWCGCFCLDVYWVL*

mRNA from alignment at Ecto-sp13_S_contig9862:4593..5184+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig9862.21504.1 ID=mRNA_Ecto-sp13_S_contig9862.21504.1|Name=mRNA_Ecto-sp13_S_contig9862.21504.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=592bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9862:4593..5184+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATCGGTTCCAAGTTCTGGGAAGTGATCTCGGACGAGCACGGCATCGA
TCCCACCGGTGTCTACCATGGCGACTCCGACCTCCAGCTCGAGCGCATCA
ACTGCTACTTCAATGAGGCCACGGGAGGCCGCTACGTGCCCCGCGCCATC
CTCATGGACCTCGAGCCCGGGACGATGGACTCGGTGCGCTCGGGGCCCTT
CGGGCAGCTTTTCAGGCCCGACAACTTTGTGTTCGGCCAGACCGGCGCGG
GCAACAACTGGGCGAAGGGCCACTACACGGAGGGCGCGGAGCTGATCGAC
TCGGTGCTGGACGTCGTGCGAAAGGAGGCGGAGTCTTGCGACGCACTCCA
GGGCTTCCAGCTGACCCACTCGATGGGAGGCGGTACCGGAGCGGGTATGG
GAACCCTACTGATCTCCAAGGTGCGGCGGCGGGGGTACCGTTTAGGTTGT
GGACGGGCGTGGTGCGGTTGTTTTTGCCTGGATGTTTATTGGGTGCTTTG
ATTCGGTTGATGTTGGCGGCTCGCCGCTGATCTGTAGCAGCGCGTTGTGA
ATCCTACCGTGTTCATGGCGTATGTAGTTTGACGATGACGAC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9862:4593..5184+

>mRNA_Ecto-sp13_S_contig9862.21504.1 ID=mRNA_Ecto-sp13_S_contig9862.21504.1|Name=mRNA_Ecto-sp13_S_contig9862.21504.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9862:4593..5184+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCTCGAGCCCGGGACGATGGACTCGGTGCGCTCGGGGCCCTTCGG
GCAGCTTTTCAGGCCCGACAACTTTGTGTTCGGCCAGACCGGCGCGGGCA
ACAACTGGGCGAAGGGCCACTACACGGAGGGCGCGGAGCTGATCGACTCG
GTGCTGGACGTCGTGCGAAAGGAGGCGGAGTCTTGCGACGCACTCCAGGG
CTTCCAGCTGACCCACTCGATGGGAGGCGGTACCGGAGCGGGTATGGGAA
CCCTACTGATCTCCAAGGTGCGGCGGCGGGGGTACCGTTTAGGTTGTGGA
CGGGCGTGGTGCGGTTGTTTTTGCCTGGATGTTTATTGGGTGCTTTGA