mRNA_Ecto-sp13_S_contig9854.21496.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9854.21496.1
Unique NamemRNA_Ecto-sp13_S_contig9854.21496.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9854.21496.1 vs. uniprot
Match: A0A6H5KEX8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KEX8_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 2.500e-54
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 1
Query:    1 VSNFDERLHPLLKNLGVYESFDFVLTSRECGSEKPEPHMFLEALKRAGSSGGGDGDGRGVIVGDTFRTDVLGARSVGWDAVLITRGKD 264
            VSNFDERLHPLLKNLGVYESFDFVLTSRECGSEKPEPHMF EALKRAGSSGGGDGDGRGVIVGDTFRTDVLGARSVGWDAVLITRGKD
Sbjct:  201 VSNFDERLHPLLKNLGVYESFDFVLTSRECGSEKPEPHMFHEALKRAGSSGGGDGDGRGVIVGDTFRTDVLGARSVGWDAVLITRGKD 288          
BLAST of mRNA_Ecto-sp13_S_contig9854.21496.1 vs. uniprot
Match: A0A6V7I3G1_9HYME (Uncharacterized protein (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7I3G1_9HYME)

HSP 1 Score: 76.6 bits (187), Expect = 9.310e-16
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    1 VSNFDERLHPLLKNLGVYESFDFVLTSRECGSEKPEPHMFLEALKRAGSSGGGDGD-GRGVIVGDTFRTDVLGARSVGWDAVLITRG 258
            VSNFDERLH +LK+  +   F FVLTS E GSEKP   +F EALK    + G   +  + + VGD ++ D +GA++ GW++ L+T G
Sbjct:   38 VSNFDERLHSILKDTSLNNHFAFVLTSYEHGSEKPALSIFAEALKLGAEARGEMIEPSQAIHVGDNYKLDYVGAKNAGWNSFLMTHG 124          
BLAST of mRNA_Ecto-sp13_S_contig9854.21496.1 vs. uniprot
Match: A0A7S2STH1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STH1_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 9.350e-16
Identity = 42/83 (50.60%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    1 VSNFDERLHPLLKNLGVYESFDFVLTSRECGSEKPEPHMFLEALKRAGSSGGGDGDGRGVIVGDTFRTDVLGARSVGWDAVLI 249
            +SNFDERLH LL NLG+   FD VLTS+EC  EKP   +F  AL R G         R V +GDTF  DV GA   GW+A+ +
Sbjct:  242 ISNFDERLHKLLDNLGIAHYFDIVLTSKECCVEKPNSPIFDMALSRLGIYD----RSRAVHIGDTFDKDVAGAARAGWNAIFV 320          
BLAST of mRNA_Ecto-sp13_S_contig9854.21496.1 vs. uniprot
Match: A0A7C7CVE5_9BACT (HAD family hydrolase (Fragment) n=4 Tax=root TaxID=1 RepID=A0A7C7CVE5_9BACT)

HSP 1 Score: 77.8 bits (190), Expect = 1.220e-15
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    1 VSNFDERLHPLLKNLGVYESFDFVLTSRECGSEKPEPHMFLEALKRAGSSGGGDGDGRGVI-VGDTFRTDVLGARSVGWDAVLITRGK 261
            VSN+D RLH +LK+ G+ E FDF+L S E GS KP+  +F+EA++R+G       D   V  +GD    D+ GA SVG +A+LI R K
Sbjct:  132 VSNWDSRLHTILKSTGLAEYFDFILASAEVGSAKPDKKIFIEAIRRSGV------DSTEVCHIGDDLHADIQGANSVGIEAILIDRNK 213          
BLAST of mRNA_Ecto-sp13_S_contig9854.21496.1 vs. uniprot
Match: UPI00046CC868 (HAD-IA family hydrolase n=1 Tax=Deferrisoma camini TaxID=1035120 RepID=UPI00046CC868)

HSP 1 Score: 77.4 bits (189), Expect = 2.160e-15
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    1 VSNFDERLHPLLKNLGVYESFDFVLTSRECGSEKPEPHMFLEALKRAGSSGGGDGDGRGVIVGDTFRTDVLGARSVGWDAVLITRGKD 264
            VSN+D RLH +L+ LG+ + F FVL S E G+EKP+P +F EA +R G++       R + VGD +R DVLGAR+ G    L+ R  D
Sbjct:  134 VSNWDSRLHEILRGLGLRDRFRFVLVSAEFGAEKPDPAIFHEAARRLGTA-----PDRMLHVGDLYREDVLGARAAGMVGALVDRRGD 216          
BLAST of mRNA_Ecto-sp13_S_contig9854.21496.1 vs. uniprot
Match: A0A2P6N2V2_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N2V2_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 4.100e-15
Identity = 36/88 (40.91%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    1 VSNFDERLHPLLKNLGVYESFDFVLTSRECGSEKPEPHMFLEALKRAGSSGGGDGDGRGVIVGDTFRTDVLGARSVGWDAVLITRGKD 264
            ++N DER+H +L++LG++  FDFVL SRE G  KP+P ++ EA + +          + + VGD +  D LGA+ +G +A+L+TRG+D
Sbjct:  164 ITNTDERIHQVLESLGIHHLFDFVLCSREFGKRKPDPSIYTEACRLSKHH-----PSQVMHVGDHYEKDFLGAKGIGMEALLVTRGQD 246          
BLAST of mRNA_Ecto-sp13_S_contig9854.21496.1 vs. uniprot
Match: A0A8J5XU42_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XU42_DIALT)

HSP 1 Score: 77.8 bits (190), Expect = 4.790e-15
Identity = 44/83 (53.01%), Postives = 52/83 (62.65%), Query Frame = 1
Query:    1 VSNFDERLHPLLKNLGVYESFDFVLTSRECGSEKPEPHMFLEALKRAGSSGGGDGDGRGVIVGDTFRTDVLGARSVGWDAVLI 249
            +SNFD+RL  LL +LG+   FDFVLTSRE G EKP   +F  A +RAG +         V VGDTF TDVLGA   GW AV +
Sbjct:  164 ISNFDDRLPALLNSLGLGRYFDFVLTSREHGDEKPCRSIFERASERAGLATVDVSPRTCVHVGDTFGTDVLGASRAGWRAVFV 246          
BLAST of mRNA_Ecto-sp13_S_contig9854.21496.1 vs. uniprot
Match: A0A7S2PCP1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PCP1_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 4.950e-15
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 1
Query:    1 VSNFDERLHPLLKNLGVYESFDFVLTSRECGSEKPEPHMFLEALKRAGSSGGGDGDGRGVIVGDTFRTDVLGARSVGWDAVLI 249
            +SNFDERLH +L  +GV ++FDFVLTSRE GSEKP    F  A+ RAG +         + VGD F +DV+GA + GW +V I
Sbjct:  235 LSNFDERLHSILDQVGVADAFDFVLTSREIGSEKPNRSAFEVAMSRAGVAD----PSLCMHVGDGFDSDVVGASNAGWHSVWI 313          
BLAST of mRNA_Ecto-sp13_S_contig9854.21496.1 vs. uniprot
Match: A0A7Y5H731_9BACT (HAD-IA family hydrolase n=1 Tax=Candidatus Brocadiae bacterium TaxID=2517210 RepID=A0A7Y5H731_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 2.060e-14
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 1
Query:    1 VSNFDERLHPLLKNLGVYESFDFVLTSRECGSEKPEPHMFLEALKRAGSSGGGDGDGRGVIVGDTFRTDVLGARSVGWDAVLITRGK 261
            +SN D  +  +L+ LG+    +FV+ S+  G EKP+P +F  AL+R+G+       GR + VGD F  DVLGAR VG DAVL+  G+
Sbjct:  125 ISNSDGSVEAMLERLGMKSRLEFVIDSKVVGVEKPDPRIFRMALERSGAD-----PGRSIYVGDMFHIDVLGARGVGMDAVLLDPGQ 206          
BLAST of mRNA_Ecto-sp13_S_contig9854.21496.1 vs. uniprot
Match: A0A382E5F3_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382E5F3_9ZZZZ)

HSP 1 Score: 74.3 bits (181), Expect = 2.890e-14
Identity = 39/86 (45.35%), Postives = 55/86 (63.95%), Query Frame = 1
Query:    1 VSNFDERLHPLLKNLGVYESFDFVLTSRECGSEKPEPHMFLEALKRAGSSGGGDGDGRGVI-VGDTFRTDVLGARSVGWDAVLITR 255
            VSN+D RLH +L++  + + FDFVL S E GS KP+  +FLEA+K++G       D   +  +GD F  D+ GA+ VG DA+LI R
Sbjct:  132 VSNWDSRLHAILRSTDLKKYFDFVLASAEVGSAKPDKKIFLEAIKKSGI------DSTKICHIGDDFHADIQGAKGVGIDAILIDR 211          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9854.21496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KEX8_9PHAE2.500e-5498.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6V7I3G1_9HYME9.310e-1645.98Uncharacterized protein (Fragment) n=1 Tax=Bracon ... [more]
A0A7S2STH1_9STRA9.350e-1650.60Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7C7CVE5_9BACT1.220e-1546.59HAD family hydrolase (Fragment) n=4 Tax=root TaxID... [more]
UPI00046CC8682.160e-1546.59HAD-IA family hydrolase n=1 Tax=Deferrisoma camini... [more]
A0A2P6N2V2_9EUKA4.100e-1540.91Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A8J5XU42_DIALT4.790e-1553.01Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7S2PCP1_9STRA4.950e-1550.60Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7Y5H731_9BACT2.060e-1443.68HAD-IA family hydrolase n=1 Tax=Candidatus Brocadi... [more]
A0A382E5F3_9ZZZZ2.890e-1445.35Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9854contigEcto-sp13_S_contig9854:341..839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score180.3
Seed ortholog evalue4e-43
Seed eggNOG ortholog2880.D8LT61
Preferred nameHDHD3
Model size264
KEGG koko:K07025,ko:K11853
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042578,GO:0044237
Exons2
EggNOG free text desc.N-acylneuraminate-9-phosphatase activity
EggNOG OGsCOG1011@1,KOG3085@2759
Ec32 ortholog descriptionhaloacid dehalogenase-like hydrolase
Ec32 orthologEc-12_005370.1
EC3.4.19.12
Cds size264
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464247.57829-CDS-Ecto-sp13_S_contig9854:340..4231681464247.57829-CDS-Ecto-sp13_S_contig9854:340..423Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9854 341..423 +
1681464247.5937018-CDS-Ecto-sp13_S_contig9854:658..8391681464247.5937018-CDS-Ecto-sp13_S_contig9854:658..839Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9854 659..839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9854.21496.1prot_Ecto-sp13_S_contig9854.21496.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9854 341..839 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9854.21496.1

>prot_Ecto-sp13_S_contig9854.21496.1 ID=prot_Ecto-sp13_S_contig9854.21496.1|Name=mRNA_Ecto-sp13_S_contig9854.21496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=88bp
VSNFDERLHPLLKNLGVYESFDFVLTSRECGSEKPEPHMFLEALKRAGSS
GGGDGDGRGVIVGDTFRTDVLGARSVGWDAVLITRGKD
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mRNA from alignment at Ecto-sp13_S_contig9854:341..839+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9854.21496.1 ID=mRNA_Ecto-sp13_S_contig9854.21496.1|Name=mRNA_Ecto-sp13_S_contig9854.21496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=499bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9854:341..839+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTATCCAACTTTGACGAGCGCCTCCACCCGCTCCTTAAGAATCTCGGCGT GTATGAGTCCTTCGACTTCGTGCTCACATCGAGGTACAAAGCATTTGCTC GCAACGATAGCGCGATTTCAACACCCTGTTGGTTTCGGCGTGTGTTTTTT CATCAGGGTTGCTTGTGACTGTTTAATGGACACCGTGCGCGGCTTCATTG TGGGTATTTGGCGTTGCGTCTCGGTCGGTGCGCACTAACTTTCGCGCTGC ATGCGTTTTGCAGTCATTATGCCAAAGAAGCGCAAAATGCCTCGTGTTTA CAATTTTTTTTTTCTCAGGGAGTGTGGCTCGGAGAAACCCGAACCGCACA TGTTCCTAGAAGCTCTCAAGCGGGCGGGATCGAGCGGCGGCGGGGACGGT GACGGGAGGGGGGTGATCGTTGGCGATACCTTCAGGACCGATGTGCTGGG CGCGAGATCGGTTGGCTGGGACGCTGTGCTCATCACGAGGGGGAAAGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9854:341..839+

>mRNA_Ecto-sp13_S_contig9854.21496.1 ID=mRNA_Ecto-sp13_S_contig9854.21496.1|Name=mRNA_Ecto-sp13_S_contig9854.21496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9854:341..839+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTATCCAACTTTGACGAGCGCCTCCACCCGCTCCTTAAGAATCTCGGCGT
GTATGAGTCCTTCGACTTCGTGCTCACATCGAGGGAGTGTGGCTCGGAGA
AACCCGAACCGCACATGTTCCTAGAAGCTCTCAAGCGGGCGGGATCGAGC
GGCGGCGGGGACGGTGACGGGAGGGGGGTGATCGTTGGCGATACCTTCAG
GACCGATGTGCTGGGCGCGAGATCGGTTGGCTGGGACGCTGTGCTCATCA
CGAGGGGGAAAGAC
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