mRNA_Ecto-sp13_S_contig9853.21494.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9853.21494.1
Unique NamemRNA_Ecto-sp13_S_contig9853.21494.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9853.21494.1 vs. uniprot
Match: D8LD91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD91_ECTSI)

HSP 1 Score: 251 bits (641), Expect = 6.800e-80
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1
Query:    1 AVPIPAGEGSRGARILMRSEGTRHGMTFQEVPEDADLRATLKDGPYFYAELPGDVVGSRVRLIHRGGNIDARGNRRHVPLQFGRDVAAKLLSMPERAHWRDCSLPKAKEILQADIFKEAFK 363
            AVPIPAGEGSRGARILMRSEGTRHGMTFQEVPEDADLRATLKDGPYFYAELPGDVVGSRVRLIHRGGNIDARGNRRHVPLQFGRDVAAKLLSMPERAHWRDCSLPKAKEILQADIFKEAFK
Sbjct:  352 AVPIPAGEGSRGARILMRSEGTRHGMTFQEVPEDADLRATLKDGPYFYAELPGDVVGSRVRLIHRGGNIDARGNRRHVPLQFGRDVAAKLLSMPERAHWRDCSLPKAKEILQADIFKEAFK 472          
BLAST of mRNA_Ecto-sp13_S_contig9853.21494.1 vs. uniprot
Match: A0A836CFA8_9STRA (CwfJ C-terminus 1-domain-containing protein-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFA8_9STRA)

HSP 1 Score: 127 bits (320), Expect = 8.500e-32
Identity = 59/120 (49.17%), Postives = 81/120 (67.50%), Query Frame = 1
Query:    1 AVPIPAGEGSRGARILMRSEGTRHGMTFQEVPEDADLRATLKDGPYFYAELPGDVVGSRVRLIHRGGNIDARGNRRHVPLQFGRDVAAKLLSMPERAHWRDCSLPKAKEILQADIFKEAF 360
            A+P+P GE +RGAR++++++G R GM+F+EVP  ADLR  L+   Y YAE+PG+  GS +RL+H          R  +PLQF RD+AA+LL MP+RA W+ C L K KE   A+ FKE F
Sbjct:  701 AIPVPEGEAARGARMVLKADGLRFGMSFKEVPAGADLRQALQAKNYLYAEVPGEAPGSIIRLVHETSEALNDRGRPSIPLQFARDIAARLLLMPDRAQWKTCELSKDKETELAERFKEQF 820          
BLAST of mRNA_Ecto-sp13_S_contig9853.21494.1 vs. uniprot
Match: A0A7S0LPP7_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LPP7_9EUKA)

HSP 1 Score: 73.2 bits (178), Expect = 1.140e-12
Identity = 41/103 (39.81%), Postives = 56/103 (54.37%), Query Frame = 1
Query:    1 AVPIPAGEGSRGARILMRSEGTRHGMTFQEVPEDADLRATL-KDGPYFYAELPGDVVGSRVRLIHRGGNIDARGNRRHVPLQFGRDVAAKLLSMPERAHWRDC 306
            AVP+P       A+     EG +HG+ F+ +P D  L +TL +  P+ + ELP     S  RL+HR      R N +  PLQFGR+V A+LL  P RA W+ C
Sbjct:  380 AVPLPVDRAEL-AKATFEQEGAKHGIRFEVLPADTPLSSTLAQPEPFLHVELP-----SGERLLHR-----LRSNEKKHPLQFGREVLARLLGQPRRADWKVC 471          
BLAST of mRNA_Ecto-sp13_S_contig9853.21494.1 vs. uniprot
Match: A0A0J8B6N2_BETVV (Uncharacterized protein n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8B6N2_BETVV)

HSP 1 Score: 66.6 bits (161), Expect = 2.300e-10
Identity = 44/128 (34.38%), Postives = 63/128 (49.22%), Query Frame = 1
Query:    1 AVPIPAGEGSRGARILMRSEGTRHGMTFQEVPEDAD------LRATLKDGP-YFYAELPGDVVGSRVRLIHRGGNIDARGNRRHVPLQFGRDVAAKLLSMPERAHWRDCSLPKAKEILQADIFKEAFK 363
            AVPIP  + S  A+ +      + G  F+ +  D D      L+A  +    +FY EL    +         G  ID   N    P+QFGR+V A LL MP+RA WR+C L K +E+++ + FK  FK
Sbjct:  486 AVPIPQTKASS-AKSIFNLAAKKLGFDFETIKGDNDSEARELLKAKFEGASGFFYVELHDGTI--------LGHTIDENEN---FPVQFGREVMAGLLKMPDRADWRNCKLSKDEEVIKVEDFKSQFK 601          
BLAST of mRNA_Ecto-sp13_S_contig9853.21494.1 vs. uniprot
Match: A0A6P5FSW7_ANACO (zinc finger CCCH domain-containing protein 59 n=4 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5FSW7_ANACO)

HSP 1 Score: 65.1 bits (157), Expect = 7.960e-10
Identity = 46/129 (35.66%), Postives = 64/129 (49.61%), Query Frame = 1
Query:    1 AVPIPAGEGSRGARILMRSEGTRHGMTFQEVPEDAD------LRATLKDGP--YFYAELPGDVVGSRVRLIHRGGNIDARGNRRHVPLQFGRDVAAKLLSMPERAHWRDCSLPKAKEILQADIFKEAFK 363
            A+PIP  + S   +I   +   R G  F  +  D D      L  +  DG    FY ELP   +     L+HR   +D   +    P+QFGR+V A LL MP+RA WR+C + K  E++  D FKE F+
Sbjct:  485 AIPIPLSKASSVEKIFSLA-AKRTGFEFVVLNPDNDSTDGRKLLRSQFDGKSSLFYVELPEGKI-----LLHR---VD---DNEKFPVQFGREVLAGLLRMPDRADWRNCKVTKEDEMMMVDGFKEGFR 601          
BLAST of mRNA_Ecto-sp13_S_contig9853.21494.1 vs. uniprot
Match: A0A5J9TD57_9POAL (Uncharacterized protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9TD57_9POAL)

HSP 1 Score: 63.9 bits (154), Expect = 2.020e-9
Identity = 47/129 (36.43%), Postives = 61/129 (47.29%), Query Frame = 1
Query:    1 AVPIPAGEGSRGARILMRSEGTRHGMTFQEVPEDAD-------LRATLKD-GPYFYAELPGDVVGSRVRLIHRGGNIDARGNRRHVPLQFGRDVAAKLLSMPERAHWRDCSLPKAKEILQADIFKEAFK 363
            AVP+P+ +     +I   +   R G  F  V  D D       LR+   D    FY ELP   +     L+H+   ID        P QFGR+V A LLSM +RA WR+C L K +EI   D FK  F+
Sbjct:  481 AVPVPSSKADAVKKIFYLA-AKRLGFEFSVVNPDGDGTQGRDLLRSQCGDKSSLFYVELPEGRI-----LLHK---IDGAEK---FPAQFGREVLAGLLSMADRADWRNCKLSKEEEIQMVDDFKRGFR 597          
BLAST of mRNA_Ecto-sp13_S_contig9853.21494.1 vs. uniprot
Match: A0A3L6T6Z6_PANMI (Uncharacterized protein n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6T6Z6_PANMI)

HSP 1 Score: 63.5 bits (153), Expect = 2.180e-9
Identity = 46/128 (35.94%), Postives = 63/128 (49.22%), Query Frame = 1
Query:    1 AVPIPAGEGSRGARILMRSEGTRHGMTFQ-------EVPEDADLRATLKDGPYFYAELPGDVVGSRVRLIHRGGNIDARGNRRHVPLQFGRDVAAKLLSMPERAHWRDCSLPKAKEILQADIFKEAFK 363
            AVP+P  +     +I    E  R G  F        +V  ++ +  +      FY ELP   +     L+H   NID  GN +  P QFGR+V A LLSM +RA WR+C L K +EI   D FK+ F+
Sbjct:  206 AVPVPFPKADAVNKIF-HLEAKRMGFEFSVVNPGGAKVARESLISQSESKSSLFYVELPEGKI-----LLH---NID--GNEK-FPAQFGREVLAGLLSMADRADWRNCKLSKEEEIQMVDNFKQDFR 321          
BLAST of mRNA_Ecto-sp13_S_contig9853.21494.1 vs. uniprot
Match: A0A453KPX0_AEGTS (Uncharacterized protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453KPX0_AEGTS)

HSP 1 Score: 62.8 bits (151), Expect = 4.800e-9
Identity = 46/129 (35.66%), Postives = 62/129 (48.06%), Query Frame = 1
Query:    1 AVPIPAGEGSRGARILMRSEGTRHGMTFQEVPEDAD------LRATLKDGP--YFYAELPGDVVGSRVRLIHRGGNIDARGNRRHVPLQFGRDVAAKLLSMPERAHWRDCSLPKAKEILQADIFKEAFK 363
            AVP+P  + +   +I   +   R G  F  V  D D      L  +  DG    FY ELP   +     L+H    I   G +   P QFGR+V A LLSM +RA WR+C L K +E+   D FK+ F+
Sbjct:  291 AVPVPLSKATNVKKIFHLA-AQRLGFEFSVVNPDGDANQGRELLRSQYDGKSGLFYVELPDGTL-----LLH----IIDSGEK--FPAQFGREVLAGLLSMADRADWRNCKLSKEEEVKMVDDFKQGFR 407          
BLAST of mRNA_Ecto-sp13_S_contig9853.21494.1 vs. uniprot
Match: C3H59_ORYSJ (Zinc finger CCCH domain-containing protein 59 n=14 Tax=Oryzinae TaxID=1648021 RepID=C3H59_ORYSJ)

HSP 1 Score: 62.0 bits (149), Expect = 9.550e-9
Identity = 46/129 (35.66%), Postives = 61/129 (47.29%), Query Frame = 1
Query:    1 AVPIPAGEGSRGARILMRSEGTRHGMTFQEVPEDADL---RATLKD-----GPYFYAELPGDVVGSRVRLIHRGGNIDARGNRRHVPLQFGRDVAAKLLSMPERAHWRDCSLPKAKEILQADIFKEAFK 363
            AVP+P  + S   +I   +   R G  F  V  D D    R  L+         FY ELP   V     L+H    +D+       P QFGR+V A LLSM +RA WR+C + K +EI   D FK+ F+
Sbjct:  491 AVPVPLSKASSVKKIFHLA-AQRLGFEFSVVNPDGDANRARELLRSECDSKSSLFYVELPEGSV-----LLHL---VDSNEK---FPAQFGREVLAGLLSMADRADWRNCKVSKEEEIQMVDDFKQGFR 607          
BLAST of mRNA_Ecto-sp13_S_contig9853.21494.1 vs. uniprot
Match: A0A833RA64_9POAL (Zinc finger CCCH domain-containing protein 59 isoform X1 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833RA64_9POAL)

HSP 1 Score: 61.6 bits (148), Expect = 1.300e-8
Identity = 39/104 (37.50%), Postives = 58/104 (55.77%), Query Frame = 1
Query:   55 SEG--TRHGMTFQEVPEDADLRATLKDGPYFYAELPGDVVGSRVRLIHRGGNIDARGNRRHVPLQFGRDVAAKLLSMPERAHWRDCSLPKAKEILQADIFKEAF 360
            SEG  T +G+  +E+    D +++L     FY ELPG  +     L+H   ++D   +    P+QFGR+V A LL MP+RA WR C L K +E+   ++ K AF
Sbjct:  521 SEGDSTTNGIGRKELRSKFDGKSSL-----FYVELPGKKI-----LVH---SVD---DNEKFPVQFGREVLAGLLGMPDRADWRKCKLSKEEEMEMVNVLKPAF 608          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9853.21494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD91_ECTSI6.800e-80100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CFA8_9STRA8.500e-3249.17CwfJ C-terminus 1-domain-containing protein-like p... [more]
A0A7S0LPP7_9EUKA1.140e-1239.81Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A0J8B6N2_BETVV2.300e-1034.38Uncharacterized protein n=1 Tax=Beta vulgaris subs... [more]
A0A6P5FSW7_ANACO7.960e-1035.66zinc finger CCCH domain-containing protein 59 n=4 ... [more]
A0A5J9TD57_9POAL2.020e-936.43Uncharacterized protein n=1 Tax=Eragrostis curvula... [more]
A0A3L6T6Z6_PANMI2.180e-935.94Uncharacterized protein n=1 Tax=Panicum miliaceum ... [more]
A0A453KPX0_AEGTS4.800e-935.66Uncharacterized protein n=2 Tax=Aegilops tauschii ... [more]
C3H59_ORYSJ9.550e-935.66Zinc finger CCCH domain-containing protein 59 n=14... [more]
A0A833RA64_9POAL1.300e-837.50Zinc finger CCCH domain-containing protein 59 isof... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9853contigEcto-sp13_S_contig9853:165..2182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score249.6
Seed ortholog evalue7.4e-64
Seed eggNOG ortholog2880.D8LD91
Model size363
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
Exons3
EggNOG free text desc.DNA binding
EggNOG OGsKOG2476@1,KOG2476@2759
Ec32 ortholog descriptionCwf19-like protein, C-terminal domain-2
Ec32 orthologEc-25_002080.1
Cds size363
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464247.4381607-CDS-Ecto-sp13_S_contig9853:164..3321681464247.4381607-CDS-Ecto-sp13_S_contig9853:164..332Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9853 165..332 -
1681464247.4575164-CDS-Ecto-sp13_S_contig9853:918..10231681464247.4575164-CDS-Ecto-sp13_S_contig9853:918..1023Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9853 919..1023 -
1681464247.4695244-CDS-Ecto-sp13_S_contig9853:2092..21821681464247.4695244-CDS-Ecto-sp13_S_contig9853:2092..2182Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9853 2093..2182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9853.21494.1prot_Ecto-sp13_S_contig9853.21494.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9853 165..2182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9853.21494.1

>prot_Ecto-sp13_S_contig9853.21494.1 ID=prot_Ecto-sp13_S_contig9853.21494.1|Name=mRNA_Ecto-sp13_S_contig9853.21494.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
AVPIPAGEGSRGARILMRSEGTRHGMTFQEVPEDADLRATLKDGPYFYAE
LPGDVVGSRVRLIHRGGNIDARGNRRHVPLQFGRDVAAKLLSMPERAHWR
DCSLPKAKEILQADIFKEAFK
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mRNA from alignment at Ecto-sp13_S_contig9853:165..2182-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9853.21494.1 ID=mRNA_Ecto-sp13_S_contig9853.21494.1|Name=mRNA_Ecto-sp13_S_contig9853.21494.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2018bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9853:165..2182- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGTGCCGATTCCGGCTGGTGAGGGTTCTCGAGGAGCCCGGATACTCAT GCGCTCCGAAGGCACCAGGCACGGGATGACCTTTCAAGAGGTGAGTGGGA CGTTTCACGTATACCGTAGGTGACATGACACTAGAGACCACACCCCCTTG ATCGATTTTCACGGCTCGATTACTCCACGATGAAGAGGATGCGTAAATGA AACGATACGCTTACGAAAATCTCTCGGTGACACGGGTTCTACGCCCCCTT TATCGGCGCTGCCGCTCTTTCTTTTGGTGCGGAGTGACCGAGCTTTGAAA ACCGGTTCAGGGCGTGTGTTATCTTGTGTCGCCTACGGCAACTCAGTACA TCTGTCACGAACACGCTGGTGACAGCAGTGGGGGACGTTGTGTGACATGG TGTATTGGGCCGCCATTTTGACGCGCCGTTCAACAGCGTCGGCTGTCAAG AAAACAAGGGGATGCATTCAAGTCGTCCGTTGAGGTTGCCTGCGTACAAA ATCATTGTTTTTTTTATTATCGTGGATGATTTCCTAAAGTGAAATGTTTT CAAGCTGTTTTTTTTCTTTCCGCCGTGGAGTGTCAAGCCAATTCAGGTGT TGAGCGAAACACGATTGAGTTACATTCAACATTGTGAAGCGGTGTTCAAT GATTGAACCGGAAGATGAACCGCCCTTCCATTTTTTGTTCGTTTTTATTT GGTGTACTTGTCGAAGGAAACTGAGACAGTGTCCGACGTTTCTGGACGAG TGTGTTTTTTGTAAGAGCTACACAATCGTGTAAACATCCAAATAGTTCCA AAAACATGCGGCGGAAACAATTTCCTATTTCAATTTTCGAGCACTCAGTC GCTTGAGAAGGCGGGACGAATCACCACGACATGGCATTCCCGGGTCGAAA AAGGCGTGGCCCACAAGCAATGGTCATTTTTTGAAATACAACAGTACTCT CCCTCAGTTGCGAAAACCGCTGTATTTACGTATTTCCCGCTCAACAGCTC GCACAGCTAGCCTGCTCTTCTCTCGAAAATCCCAGCGAGCCTCAACTATC AAACTTACGAGTCAACAGACAGTCTTCCGTAGCGCGTAGAGCCGAGAAAG ACGAACCCTCATGTCCGTCCACCGTGCAACCGATCGATCAACACGGCCTT GTTTTCAAGGTACCGGAAGATGCTGACCTGAGAGCGACGCTGAAGGACGG GCCGTACTTCTACGCCGAGCTCCCGGGGGACGTTGTCGGCAGCAGGGTGC GGCTCATACACAGAGTTCCCGAGGTAAGAAGTGTCTTTTTCATTTTTAGA TGGGCTGCAGGCGCGAGCAGGGAGCTATCCCCCCCCCTCGGCCTTCGTCG AGACGGATACGAAACGGCGATTGTAAGGTAAAAGGTTTGGGTGTAACACG CATACCAAGCGGGAGGCTGGCTCTTGAGCGGTAGTCTTTTGAGTGATGGA AAATGCCGGAGACCTCCTCTTCCAGGCTACGGGAAGACAAAATTATACTA TTGCAGTAGTGGTCCCGGTGTAATGCCGGTGCGATTTCACCAACGTTTTT TCACCGCCGGCATTTTAAAGCGGGCAACCAGCATTTTATTAAGAGTGTGA AACGCCTTGAATGTTTCACCTGTGCCAGACGATTTCACCGCTATTGTAGC GAACAACCGGCATTTTATTCATAGTATGAAACGACTTGAATATTCCATCT GTGCCACACGATTTCACCGCTATTCTACCGGGCGACCGGCATTATATCGG GACCACTAGTATATACCCTCGACATGCGATACACGAAGCGCTTCTATTTT CGTTTGTGGGCGCACCGCCGCCGCCGCCTCCGCCGCCGCGGGTTTTCCAG GGAGGCAACATCGACGCTAGGGGAAACCGGCGTCACGTCCCCCTGCAGTT CGGGAGGGATGTGGCCGCGAAGCTGCTGAGCATGCCCGAGAGGGCCCACT GGAGGGACTGCTCGCTGCCGAAGGCTAAGGAGATCCTGCAGGCGGACATT TTCAAGGAGGCCTTCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9853:165..2182-

>mRNA_Ecto-sp13_S_contig9853.21494.1 ID=mRNA_Ecto-sp13_S_contig9853.21494.1|Name=mRNA_Ecto-sp13_S_contig9853.21494.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9853:165..2182- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGTGCCGATTCCGGCTGGTGAGGGTTCTCGAGGAGCCCGGATACTCAT
GCGCTCCGAAGGCACCAGGCACGGGATGACCTTTCAAGAGGTACCGGAAG
ATGCTGACCTGAGAGCGACGCTGAAGGACGGGCCGTACTTCTACGCCGAG
CTCCCGGGGGACGTTGTCGGCAGCAGGGTGCGGCTCATACACAGAGGAGG
CAACATCGACGCTAGGGGAAACCGGCGTCACGTCCCCCTGCAGTTCGGGA
GGGATGTGGCCGCGAAGCTGCTGAGCATGCCCGAGAGGGCCCACTGGAGG
GACTGCTCGCTGCCGAAGGCTAAGGAGATCCTGCAGGCGGACATTTTCAA
GGAGGCCTTCAAG
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