mRNA_Ecto-sp13_S_contig9851.21492.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig9851.21492.1
Unique Name	mRNA_Ecto-sp13_S_contig9851.21492.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig9851.21492.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 6.800e-70
Identity = 110/141 (78.01%), Postives = 120/141 (85.11%), Query Frame = -2

Query:    7 LGGLVNEHGDLTRGINYRSRTAWACVRRYGHELFDRPNAPFRLKIRLLPAETMEALLYCCMTWPPRQHQCRTLRTIHHRLLVRVIGYQREKGTYRQRFYAQTLKRVGCQSVETTVRQRRLLFAGALVRQPGGRLPKRVMLG 429
            LGGLVNEHGDLTR INYRSR AWAC+RRYG ELFDRP APFRLKIRLL AE MEALLY CMTW P     +TLR+IHHRLL+RVIGY+R+K TYRQ  YAQTL+RV C+SVE T+RQRRLLFAGAL RQP GRLPKR+M G
Sbjct:   81 LGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLRRVECESVEPTIRQRRLLFAGALARQPDGRLPKRLMFG 221

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BLAST of mRNA_Ecto-sp13_S_contig9851.21492.1 vs. uniprot
Match: A0A6H5LCI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCI9_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 1.640e-69
Identity = 111/141 (78.72%), Postives = 119/141 (84.40%), Query Frame = -2

Query:    7 LGGLVNEHGDLTRGINYRSRTAWACVRRYGHELFDRPNAPFRLKIRLLPAETMEALLYCCMTWPPRQHQCRTLRTIHHRLLVRVIGYQREKGTYRQRFYAQTLKRVGCQSVETTVRQRRLLFAGALVRQPGGRLPKRVMLG 429
            LGGLVNEHGDLTR INYRSR AWAC+RRYG ELFDRPNAPFRLKIRLL AE MEALLY CMTW P     +TLR+IHHRLL+RVIGY+R+K TYRQ  YAQTLKRV CQSVE T+RQRRLL AGAL  QP GRLPKR+M G
Sbjct:  117 LGGLVNEHGDLTREINYRSRGAWACLRRYGWELFDRPNAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVQCQSVEATIRQRRLLIAGALATQPDGRLPKRLMFG 257

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BLAST of mRNA_Ecto-sp13_S_contig9851.21492.1 vs. uniprot
Match: A0A6H5KN66_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN66_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 1.710e-69
Identity = 117/141 (82.98%), Postives = 124/141 (87.94%), Query Frame = -2

Query:    7 LGGLVNEHGDLTRGINYRSRTAWACVRRYGHELFDRPNAPFRLKIRLLPAETMEALLYCCMTWPPRQHQCRTLRTIHHRLLVRVIGYQREKGTYRQRFYAQTLKRVGCQSVETTVRQRRLLFAGALVRQPGGRLPKRVMLG 429
            LGGLVNEHGDLTR INYR++ AWACVRRYG ELFDRP APFRLK RLL AE MEALLY CMTW PRQ Q RTLRTIHHRLL+RV+GYQR K TYRQ  YAQTLKRVGCQSVE+T+RQRRLLFAGAL RQP GRLPKR+MLG
Sbjct:  646 LGGLVNEHGDLTREINYRNKAAWACVRRYGQELFDRPRAPFRLKTRLLQAEAMEALLYGCMTWAPRQDQYRTLRTIHHRLLLRVVGYQRMKCTYRQLSYAQTLKRVGCQSVESTIRQRRLLFAGALARQPDGRLPKRLMLG 786

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BLAST of mRNA_Ecto-sp13_S_contig9851.21492.1 vs. uniprot
Match: A0A6H5KQ16_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ16_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 8.620e-69
Identity = 108/141 (76.60%), Postives = 119/141 (84.40%), Query Frame = -2

Query:    7 LGGLVNEHGDLTRGINYRSRTAWACVRRYGHELFDRPNAPFRLKIRLLPAETMEALLYCCMTWPPRQHQCRTLRTIHHRLLVRVIGYQREKGTYRQRFYAQTLKRVGCQSVETTVRQRRLLFAGALVRQPGGRLPKRVMLG 429
            LGGLVNEHGDLTR INYRSR AWAC+RRYG ELFDRP APFRLKIRLL AE MEALLY CMTW P     +TLR+IHHRLL+RV+GY+R+K TYRQ  +AQTLKRV CQSV  T+RQRR+LFAGAL RQP GRLPKR+M G
Sbjct:   81 LGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVVGYKRKKDTYRQLGHAQTLKRVECQSVAATIRQRRILFAGALTRQPDGRLPKRLMFG 221

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BLAST of mRNA_Ecto-sp13_S_contig9851.21492.1 vs. uniprot
Match: A0A6H5KBN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBN1_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 9.210e-68
Identity = 108/141 (76.60%), Postives = 116/141 (82.27%), Query Frame = -2

Query:    7 LGGLVNEHGDLTRGINYRSRTAWACVRRYGHELFDRPNAPFRLKIRLLPAETMEALLYCCMTWPPRQHQCRTLRTIHHRLLVRVIGYQREKGTYRQRFYAQTLKRVGCQSVETTVRQRRLLFAGALVRQPGGRLPKRVMLG 429
            LGGLVNEHGDLTR INYRSR AWAC+RRY  ELFDRP APFRLKI L  AE MEALLY CMTW P     +TLR+IHHRLL+RVIGY R++ TYRQ  Y QTLKRVGCQSVE T+RQRRLLFAGA  RQP GRLPKR+MLG
Sbjct:  116 LGGLVNEHGDLTREINYRSRGAWACLRRYDRELFDRPKAPFRLKIHLRQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYMRKEDTYRQLSYPQTLKRVGCQSVEATIRQRRLLFAGAFARQPDGRLPKRLMLG 256

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BLAST of mRNA_Ecto-sp13_S_contig9851.21492.1 vs. uniprot
Match: A0A6H5JBT6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT6_9PHAE)

HSP 1 Score: 221 bits (562), Expect = 9.640e-68
Identity = 110/141 (78.01%), Postives = 119/141 (84.40%), Query Frame = -2

Query:    7 LGGLVNEHGDLTRGINYRSRTAWACVRRYGHELFDRPNAPFRLKIRLLPAETMEALLYCCMTWPPRQHQCRTLRTIHHRLLVRVIGYQREKGTYRQRFYAQTLKRVGCQSVETTVRQRRLLFAGALVRQPGGRLPKRVMLG 429
            LGGLVNEHGDLTR  NYRSR AWAC+RRYG ELFDRP APFRLKIRLL AE M+ALLY CMTW P     +TLR+IHHRLL+RVIGY+R+K TYRQ  YAQTLKRV CQSVE T+RQRRLLFAGAL RQP GRLPKR+M G
Sbjct:  225 LGGLVNEHGDLTRENNYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMDALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFG 365

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BLAST of mRNA_Ecto-sp13_S_contig9851.21492.1 vs. uniprot
Match: A0A6H5JS19_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS19_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 1.680e-67
Identity = 109/129 (84.50%), Postives = 115/129 (89.15%), Query Frame = -2

Query:    7 RGINYRSRTAWACVRRYGHELFDRPNAPFRLKIRLLPAETMEALLYCCMTWPPRQHQCRTLRTIHHRLLVRVIGYQREKGTYRQRFYAQTLKRVGCQSVETTVRQRRLLFAGALVRQPGGRLPKRVMLG 393
            R INY+SR AWAC+RRYG +LFD+PNAPFRLK RLL AE MEALLY CMTW PRQ Q RTLRTIHHRLL+RVIGYQREKGTYRQ  YAQTLKRVGCQSVETT+RQRRLLFAGAL RQP GRLPKRVMLG
Sbjct:  281 REINYQSRAAWACIRRYGQDLFDKPNAPFRLKTRLLQAEAMEALLYGCMTWAPRQDQYRTLRTIHHRLLLRVIGYQREKGTYRQLSYAQTLKRVGCQSVETTIRQRRLLFAGALARQPDGRLPKRVMLG 409

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BLAST of mRNA_Ecto-sp13_S_contig9851.21492.1 vs. uniprot
Match: A0A6H5JPL3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL3_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 1.040e-66
Identity = 111/140 (79.29%), Postives = 117/140 (83.57%), Query Frame = -2

Query:    7 GGLVNEHGDLTRGINYRSRTAWACVRRYGHELFDRPNAPFRLKIRLLPAETMEALLYCCMTWPPRQHQCRTLRTIHHRLLVRVIGYQREKGTYRQRFYAQTLKRVGCQSVETTVRQRRLLFAGALVRQPGGRLPKRVMLG 426
            GGLVNEHGDLT+ INYRS  AWACVRRYG ELF RP APFRLK RLL AE M+A+LY CMTW PR  QCRTLRTIHHRLL+R IGYQR KGTYRQ  YA+TLKRVGCQ VE T+RQR LLFAGAL RQP GRLPKRVM G
Sbjct:  391 GGLVNEHGDLTQNINYRSGAAWACVRRYGQELFHRPRAPFRLKTRLLQAEAMKAMLYGCMTWAPRPDQCRTLRTIHHRLLLRDIGYQRNKGTYRQLPYAETLKRVGCQRVENTIRQRCLLFAGALARQPDGRLPKRVMPG 530

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BLAST of mRNA_Ecto-sp13_S_contig9851.21492.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 2.830e-66
Identity = 104/141 (73.76%), Postives = 118/141 (83.69%), Query Frame = -2

Query:    7 LGGLVNEHGDLTRGINYRSRTAWACVRRYGHELFDRPNAPFRLKIRLLPAETMEALLYCCMTWPPRQHQCRTLRTIHHRLLVRVIGYQREKGTYRQRFYAQTLKRVGCQSVETTVRQRRLLFAGALVRQPGGRLPKRVMLG 429
            LGGLVNE GDLTR IN+RS+ AWAC++RY  ELFDRP APFRLK RLL AE +EALLY CMTW PR++    L+T HHRLL+RVIGY+R++GTYRQ  YAQ LKRVGCQSVE TVRQRRLLFAGA+ RQP GRLPKR+M G
Sbjct:   60 LGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFG 200

[Close]

BLAST of mRNA_Ecto-sp13_S_contig9851.21492.1 vs. uniprot
Match: A0A6H5L6U6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U6_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 4.110e-66
Identity = 115/168 (68.45%), Postives = 127/168 (75.60%), Query Frame = -2

Query:    7 AAPHAATADHRGSRAEVGMPRRFNSGTLGGLVNEHGDLTRGINYRSRTAWACVRRYGHELFDRPNAPFRLKIRLLPAETMEALLYCCMTWPPRQHQCRTLRTIHHRLLVRVIGYQREKGTYRQRFYAQTLKRVGCQSVETTVRQRRLLFAGALVRQPGGRLPKRVMLG 510
            AAP   T +  G         R+    LGGLVNEHGDLTR I++RSR AWAC+RRYG ELFDRP APFRLKIRLL AE MEALLY CMTW P     +TLR+IHHRLL+RVIGY+R+K TYRQ  YAQTLKRV CQSVE T+RQRRLL AGAL RQ  GRLPKR+MLG
Sbjct:   58 AAPPPLTIEAAGQNYAQTTEFRY----LGGLVNEHGDLTREISHRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLLAGALARQSDGRLPKRLMLG 221

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig9851.21492.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig9851.21492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JAH7_9PHAE	6.800e-70	78.01	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5LCI9_9PHAE	1.640e-69	78.72	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KN66_9PHAE	1.710e-69	82.98	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KQ16_9PHAE	8.620e-69	76.60	Reverse transcriptase domain-containing protein (F...	[more]
A0A6H5KBN1_9PHAE	9.210e-68	76.60	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JBT6_9PHAE	9.640e-68	78.01	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JS19_9PHAE	1.680e-67	84.50	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JPL3_9PHAE	1.040e-66	79.29	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JLH5_9PHAE	2.830e-66	73.76	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L6U6_9PHAE	4.110e-66	68.45	Reverse transcriptase domain-containing protein n=...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig9851	contig	Ecto-sp13_S_contig9851:4399..4984 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	0
Model size	586
Hectar predicted targeting category	other localisation
Exons	1
Cds size	429

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464247.3445911-CDS-Ecto-sp13_S_contig9851:4398..4827	1681464247.3445911-CDS-Ecto-sp13_S_contig9851:4398..4827	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig9851 4399..4827 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464247.3551893-UTR-Ecto-sp13_S_contig9851:4827..4984	1681464247.3551893-UTR-Ecto-sp13_S_contig9851:4827..4984	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig9851 4828..4984 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig9851.21492.1	prot_Ecto-sp13_S_contig9851.21492.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig9851 4399..4827 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig9851:4399..4984+
coding sequence from alignment at Ecto-sp13_S_contig9851:4399..4984+

protein sequence of mRNA_Ecto-sp13_S_contig9851.21492.1

>prot_Ecto-sp13_S_contig9851.21492.1 ID=prot_Ecto-sp13_S_contig9851.21492.1|Name=mRNA_Ecto-sp13_S_contig9851.21492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=143bp
QIAEHHPLRESSAWLPYQRSREQQAPLPDSGFHALAPYPLQGLGVETLPV
GAFLALVTDNSHEQSVVYRPQRPALVLTWGPCHAAVQQCLHRLGREQANL
ESERCVRPVEELMTISPDACPRCSAPVIDPSGEVAMFVDEAT*

mRNA from alignment at Ecto-sp13_S_contig9851:4399..4984+

Legend: CDSpolypeptideUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig9851.21492.1 ID=mRNA_Ecto-sp13_S_contig9851.21492.1|Name=mRNA_Ecto-sp13_S_contig9851.21492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=586bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9851:4399..4984+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATAGCCGAGCATCACCCGCTTCGGGAGTCGTCCGCCTGGCTGCCTTA
CCAGCGCTCCCGCGAACAGCAGGCGCCGTTGCCGGACAGTGGTTTCCACG
CTCTGGCACCCTACCCTCTTCAGGGTCTGGGCGTAGAAACGCTGCCGGTA
GGTGCCTTTCTCGCGTTGGTAACCGATAACTCGCACGAGCAGTCGGTGGT
GTATCGTCCGCAACGTCCGGCATTGGTGTTGACGTGGGGGCCATGTCATG
CAGCAGTACAGCAGTGCCTCCATCGTCTCGGCCGGGAGCAGGCGAATCTT
GAGTCGGAACGGTGCGTTCGGCCTGTCGAAGAGCTCATGACCATATCTCC
TGACGCATGCCCACGCTGTTCTGCTCCGGTAATTGATCCCTCGGGTGAGG
TCGCCATGTTCGTTGACGAGGCCACCTAGGGTACCGGAATTGAATCGTCT
GGGCATACCTACCTCTGCCCTGCTGCCTCGATGATCAGCGGTGGCGGCGT
GGGGGGCGGCGGTGTTGCAGTACAGCAGTATTATATTAGACAACCGGGGG
CGGTTGAGCAGCAAGTGTGAAGAGAGAAGCCAGTGC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9851:4399..4984+

>mRNA_Ecto-sp13_S_contig9851.21492.1 ID=mRNA_Ecto-sp13_S_contig9851.21492.1|Name=mRNA_Ecto-sp13_S_contig9851.21492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9851:4399..4984+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATAGCCGAGCATCACCCGCTTCGGGAGTCGTCCGCCTGGCTGCCTTA
CCAGCGCTCCCGCGAACAGCAGGCGCCGTTGCCGGACAGTGGTTTCCACG
CTCTGGCACCCTACCCTCTTCAGGGTCTGGGCGTAGAAACGCTGCCGGTA
GGTGCCTTTCTCGCGTTGGTAACCGATAACTCGCACGAGCAGTCGGTGGT
GTATCGTCCGCAACGTCCGGCATTGGTGTTGACGTGGGGGCCATGTCATG
CAGCAGTACAGCAGTGCCTCCATCGTCTCGGCCGGGAGCAGGCGAATCTT
GAGTCGGAACGGTGCGTTCGGCCTGTCGAAGAGCTCATGACCATATCTCC
TGACGCATGCCCACGCTGTTCTGCTCCGGTAATTGATCCCTCGGGTGAGG
TCGCCATGTTCGTTGACGAGGCCACCTAG