mRNA_Ecto-sp13_S_contig98482.21490.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig98482.21490.1
Unique NamemRNA_Ecto-sp13_S_contig98482.21490.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig98482.21490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig98482contigEcto-sp13_S_contig98482:86..378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size280
Hectar predicted targeting categoryother localisation
Exons2
Cds size207
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464247.185684-UTR-Ecto-sp13_S_contig98482:85..1561681464247.185684-UTR-Ecto-sp13_S_contig98482:85..156Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig98482 86..156 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464247.196418-CDS-Ecto-sp13_S_contig98482:156..3161681464247.196418-CDS-Ecto-sp13_S_contig98482:156..316Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98482 157..316 -
1681464247.206722-CDS-Ecto-sp13_S_contig98482:331..3781681464247.206722-CDS-Ecto-sp13_S_contig98482:331..378Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98482 332..378 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig98482.21490.1prot_Ecto-sp13_S_contig98482.21490.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig98482 157..378 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig98482.21490.1

>prot_Ecto-sp13_S_contig98482.21490.1 ID=prot_Ecto-sp13_S_contig98482.21490.1|Name=mRNA_Ecto-sp13_S_contig98482.21490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
QHGPAKPLSWWWWTRSQALPSSRNDQVRHACVRARTVASSIVPLSRNVQF
ADFCATRTLQACVFSLFF*
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mRNA from alignment at Ecto-sp13_S_contig98482:86..378-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig98482.21490.1 ID=mRNA_Ecto-sp13_S_contig98482.21490.1|Name=mRNA_Ecto-sp13_S_contig98482.21490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=293bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98482:86..378- (Ectocarpus species13 EcNAP12_S_4_19m)
CAACACGGACCAGCCAAGCCTCTCAGCTGGTGGTGGTGGACCAGGAGGTG
GTGGACCAGGAGCCAAGCACTTCCGTCGTCACGGAACGATCAGGTGAGAC
ACGCATGTGTACGCGCTCGTACAGTAGCAAGTAGTATTGTTCCACTGTCT
CGAAACGTGCAATTTGCGGACTTTTGCGCCACTCGCACACTCCAGGCTTG
TGTTTTTTCCCTTTTTTTTTGAGCCACACGTTCCCGGTACACATGTTTGA
GTTGTCATGCGCCACCCGCACACCTGACATCGTATATTTTGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig98482:86..378-

>mRNA_Ecto-sp13_S_contig98482.21490.1 ID=mRNA_Ecto-sp13_S_contig98482.21490.1|Name=mRNA_Ecto-sp13_S_contig98482.21490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98482:86..378- (Ectocarpus species13 EcNAP12_S_4_19m)
CAACACGGACCAGCCAAGCCTCTCAGCTGGTGGTGGTGGACCAGGAGCCA
AGCACTTCCGTCGTCACGGAACGATCAGGTGAGACACGCATGTGTACGCG
CTCGTACAGTAGCAAGTAGTATTGTTCCACTGTCTCGAAACGTGCAATTT
GCGGACTTTTGCGCCACTCGCACACTCCAGGCTTGTGTTTTTTCCCTTTT
TTTTTGA
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