mRNA_Ecto-sp13_S_contig984.21486.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig984.21486.1
Unique NamemRNA_Ecto-sp13_S_contig984.21486.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig984.21486.1 vs. uniprot
Match: A0A6H5K5D8_9PHAE (UDENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5D8_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 1.040e-49
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 1 
Query:    1 RQPXXXXXXKDVSREGTLDEHPLFEALYVVSVEEDASNKEGDGGAATPCSSVEAYQRASRQCPPRVIWRFPSSGETAVREEDVLKFCFPDKEAIKPSR 294
            RQPXXXXXXKDVSREGTLDEHPLFEALYVVSVEEDASN+ GDGGAA P SSVEAYQRASRQCPPRVIWRFPSSGETAVREEDVLKFCFPD+EAIKPSR
Sbjct:    4 RQPXXXXXXKDVSREGTLDEHPLFEALYVVSVEEDASNRGGDGGAAAPSSSVEAYQRASRQCPPRVIWRFPSSGETAVREEDVLKFCFPDREAIKPSR 101
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig984.21486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K5D8_9PHAE1.040e-4994.90UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig984contigEcto-sp13_S_contig984:15976..18331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size294
Hectar predicted targeting categoryother localisation
Exons2
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464246.9644496-CDS-Ecto-sp13_S_contig984:15975..160631681464246.9644496-CDS-Ecto-sp13_S_contig984:15975..16063Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig984 15976..16063 -
1681464246.9753554-CDS-Ecto-sp13_S_contig984:18125..183311681464246.9753554-CDS-Ecto-sp13_S_contig984:18125..18331Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig984 18126..18331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig984.21486.1prot_Ecto-sp13_S_contig984.21486.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig984 15976..18331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig984.21486.1

>prot_Ecto-sp13_S_contig984.21486.1 ID=prot_Ecto-sp13_S_contig984.21486.1|Name=mRNA_Ecto-sp13_S_contig984.21486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=98bp
RQPPPPPPPKDVSREGTLDEHPLFEALYVVSVEEDASNKEGDGGAATPCS
SVEAYQRASRQCPPRVIWRFPSSGETAVREEDVLKFCFPDKEAIKPSR
back to top

mRNA from alignment at Ecto-sp13_S_contig984:15976..18331-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig984.21486.1 ID=mRNA_Ecto-sp13_S_contig984.21486.1|Name=mRNA_Ecto-sp13_S_contig984.21486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2356bp|location=Sequence derived from alignment at Ecto-sp13_S_contig984:15976..18331- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGCAGCCTCCGCCTCCACCTCCGCCGAAGGATGTTAGCAGGGAGGGGAC
GCTAGACGAGCATCCCCTGTTCGAGGCGTTGTACGTGGTTTCCGTTGAGG
AGGACGCTTCGAACAAAGAGGGGGATGGTGGCGCCGCAACCCCGTGTTCC
AGCGTGGAGGCGTACCAGCGTGCCAGCCGACAGTGCCCGCCCAGGGTGAT
CTGGAGGTAAGTTTTTTTCTGTTTCATACAGACGGAAGAGATTGCTGAAC
TCTTGTCGCATTAAACTTCGAAGGCAACGTATCGCAGGAGGGGAGGGTAG
AGAGGGGCCCCTCAGTGTGACCACGGGTTGGAGTAACCGGCACTAAAATA
GGGCTGTGAGCGCTGATTTAAGCGAAGAGAAAAAAAAACACTTCTACGAG
GAGAAGTATTGGGTAGTTGCGTCTGCGTCAGTTGGACCGGCATTAGAAGG
CACTGAGCAGGGATCAGAGTGGGTTTGAATGTGAAAACAACACAAGCAAT
TTTTGTCCAAACGTTATTTTTCAAAAATTGAGAAGATTCAGCAGTATTTT
GTATAGCCGATAACCCCTGTTGCTGCCGCTGTTTCTATCGAGACAAGCGC
CCACGGTGGGGCTAGTGCAGTTGGGGGTTTGTTTCTGGTGCTCGGCGGGT
GTTGTTTTTTATTGGTAGTGTTGCTGAAGGTACTAGTAGTCGTTGTGATG
TTTCTGTGGTGATGGTGGTTTTCGTACTGTCGACACGGATGTCGCTGCTG
TTGCTGCTCCTGCTGCGGCTACAGCTGCGGGGTTTCTAGCGAGCTCGCAG
AAAGATGCCGAGGTCGGCGCGCATCCACTTTGGTGGTACTGTTACTCGGC
GGGTGTTGCGTTGGTGGTGTTGCTGGTGCTGGTGGTGCTAGTGGTCGTCG
TGATGCTTCTGTGGTGATGGTGTTTCTGGTGCTATCGACGCCGGTGCCGC
TACGGTAGAGGGCCCTCAGTAGTGCCGGAATGGAACAGACCAGACCACCG
GCACTATAAGAGGGAACGACACTTTTCAGAACAGGTATTGATAGCTTTTA
GTACAGGTTGTGGACACTCGTGCCCAGAAGGTTTAGCTTCCACTATACCG
GGCGTAGACAGTATTCAACCGCGACTACTGAGGGCCCTCTACTGTACTGC
TGCTGCTGCTGCTGCCGCTGCTGCTGCTGTGGCTGCGGCTGCTGCTGCTG
CTGTTGCTGCGGCTGCGGCGGCGGCTGCGGCGGTGGCGGCGGCGGCTGCG
GCTTTGGCTGCTACTGCTGCTGCGGCTGCGGCTGCTACTCCTGCTGCGAC
TGCTGCTGCTGCTGCTGCTGCTATTGGTTTCATCTTGTCGACCGTCCTTA
CCTCTTCGCCGGGTCTGCGAAACAAACCCTCCCGCCAGAACGGCGGCAAT
CTACGTAGGGTAGGCTGCACCACATCGCCTTTCTAGCCAGCACAGGGAAA
GAACTCTAGGTTGACGAAGCTGTCCCGTGACTACACTACAGTCAGTGTCC
CCAAGAATATCAGTAGCCGTGGCAGGGCTTTTGGTTTTCAGTACACGTGT
TGGATGAAGAGTAAAATCGGGGAAGTTGGGTTGGGGGTAGGGTTCGGGAA
TAAGGTCTGCGTACCCCCTCCCTGTTCTTTTTCGTCATGAACTTATCGTC
TCGCGAAGGCGGTCCCCAAACATGGCGGTGGTGGTGCAGCCGAAAATGAC
CGCCTGATATGGGGCAGACGCCGAATTCAATGTGTCGACAACTTGATTAT
TCAGTCTCCGCCAGCCAATTTCACCCGTCTCATGTAGGGCGACTGCCGTA
TGCAGACCGCCTTGTTCGGGAACCCCCACTACACTGCTGTTCAGCTGTTT
CGTCCCGTGTATTGTAGACGTACCGTCATAGTACGAAGCATAACCGTGTT
TCTATAGAAGCCGAAATTAAACCATTAACGATTTAACTTCGGCTTCTACA
TACCGTCCCGTGAAGATGTGCTCCCCCTCCTTATTTTCTAGTGTAACTGT
GTAGGTACTCCCCGCTGTATCGTACCTCATTTCGTCTTATTTTTTTGCGT
TTTTTGGGGCGGGTTGAAAATCTGTTGTCTTAGCTCTCTTGGGCCCCTCT
ACCTCTTTTTCTAGGAAAACTTTGTAGATATATTGCTCCATGTATCGTGT
ACCTTATTTTGTCATATTTTGTTGTTTTCGTGCATAAGTTCTCTATTTTT
TCTACGTTACCTCATTTCGTCATATTTGTCTTTTCGTATTTGAATTCTCT
CATTTTTTTTTCCCCCAGGTTTCCATCATCCGGCGAGACTGCGGTGAGGG
AGGAGGACGTGCTCAAGTTTTGCTTTCCTGACAAGGAAGCCATCAAGCCT
TCCAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig984:15976..18331-

>mRNA_Ecto-sp13_S_contig984.21486.1 ID=mRNA_Ecto-sp13_S_contig984.21486.1|Name=mRNA_Ecto-sp13_S_contig984.21486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig984:15976..18331- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGCAGCCTCCGCCTCCACCTCCGCCGAAGGATGTTAGCAGGGAGGGGAC
GCTAGACGAGCATCCCCTGTTCGAGGCGTTGTACGTGGTTTCCGTTGAGG
AGGACGCTTCGAACAAAGAGGGGGATGGTGGCGCCGCAACCCCGTGTTCC
AGCGTGGAGGCGTACCAGCGTGCCAGCCGACAGTGCCCGCCCAGGGTGAT
CTGGAGGTTTCCATCATCCGGCGAGACTGCGGTGAGGGAGGAGGACGTGC
TCAAGTTTTGCTTTCCTGACAAGGAAGCCATCAAGCCTTCCAGG
back to top