mRNA_Ecto-sp13_S_contig9834.21480.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9834.21480.1
Unique NamemRNA_Ecto-sp13_S_contig9834.21480.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9834.21480.1 vs. uniprot
Match: D8LHD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD3_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 1.260e-25
Identity = 65/119 (54.62%), Postives = 71/119 (59.66%), Query Frame = 1 
Query:  271 TEELERIWAFYRNESDKCASKPKISGRPRHFHLPSTPAPPEAGW--RGLHLKTFLPPQRAAPVLVTRAAXXXXXXXXXXXXXXXXXXXXXRRR-LSWMTQTCSTAARSFRMVGCCVRPL 618
            TEE +R+WAFYRNES KCASK  +SG PRHF   ST       W  RG HLKTFLPP+R  P +V RAA                     RRR LSWMTQTCS A RSF + GCCVRPL
Sbjct:   27 TEEQDRMWAFYRNESGKCASK--LSGSPRHFDGGST-----GSWTGRGAHLKTFLPPRRTEPAVVIRAAVAATRTAAVVVALTALAFPRGRRRRLSWMTQTCSVAVRSFPLSGCCVRPL 138
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BLAST of mRNA_Ecto-sp13_S_contig9834.21480.1 vs. uniprot
Match: D8LHD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD0_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.420e-10
Identity = 39/56 (69.64%), Postives = 42/56 (75.00%), Query Frame = 2 
Query:  242 MMMSDSRATGQRSWSGFGPSIGTRVTNAPPSPRFPGVHDTSTSLRRQLHRKRGGGG 409
            M  SDSRA GQRS SG GPSIGTRV +APPS   P +HD ST+ R QLHRKRGG G
Sbjct:    2 MNTSDSRAIGQRSRSGCGPSIGTRVASAPPS--SPALHDASTTQRHQLHRKRGGMG 55
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BLAST of mRNA_Ecto-sp13_S_contig9834.21480.1 vs. uniprot
Match: D8LHJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ2_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 5.590e-7
Identity = 47/77 (61.04%), Postives = 51/77 (66.23%), Query Frame = 3 
Query:  396 GVEGVAPEDLSSTAA-GGTGVGHQGXXXXXXXXXXXXXXXXPGVFTTKKTTLLDDPDLQYSS-PVVSNGGVLRPTPQ 620
            G  G  PED SS AA GG+GVG++GXXXXXX          PG       +LLDDPDLQYSS PVVS GGVLRPTPQ
Sbjct:  193 GGMGGVPEDFSSAAAAGGSGVGYEGXXXXXXAVGDG-----PGGTAATTASLLDDPDLQYSSSPVVSTGGVLRPTPQ 264
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9834.21480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LHD3_ECTSI1.260e-2554.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LHD0_ECTSI1.420e-1069.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LHJ2_ECTSI5.590e-761.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9834contigEcto-sp13_S_contig9834:596..5234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score62.0
Seed ortholog evalue2.5e-07
Seed eggNOG ortholog2880.D8LHJ2
Model size740
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.phosphate ion transport
EggNOG OGsCOG5409@1,KOG1162@2759
Cds size405
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464246.4473696-UTR-Ecto-sp13_S_contig9834:595..6101681464246.4473696-UTR-Ecto-sp13_S_contig9834:595..610Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9834 596..610 -
1681464246.477156-UTR-Ecto-sp13_S_contig9834:3473..35171681464246.477156-UTR-Ecto-sp13_S_contig9834:3473..3517Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9834 3474..3517 -
1681464246.4862194-UTR-Ecto-sp13_S_contig9834:4958..52341681464246.4862194-UTR-Ecto-sp13_S_contig9834:4958..5234Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9834 4959..5234 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464246.4582298-CDS-Ecto-sp13_S_contig9834:610..7151681464246.4582298-CDS-Ecto-sp13_S_contig9834:610..715Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9834 611..715 -
1681464246.4678853-CDS-Ecto-sp13_S_contig9834:3173..34731681464246.4678853-CDS-Ecto-sp13_S_contig9834:3173..3473Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9834 3174..3473 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9834.21480.1prot_Ecto-sp13_S_contig9834.21480.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9834 611..3473 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9834.21480.1

>prot_Ecto-sp13_S_contig9834.21480.1 ID=prot_Ecto-sp13_S_contig9834.21480.1|Name=mRNA_Ecto-sp13_S_contig9834.21480.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp
MRLQAQDFRASTTLPPPFDASSTGSGVEGVAPEDLSSTAAGGTGVGHQGG
GGGNKGSSSGGGGDGPGVFTTKKTTLLDDPDLQYSSPVVSNGGVLRPTPQ
VSSSRAADPAVMMPASSPAVAEQRGSRNQEPIAM*
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mRNA from alignment at Ecto-sp13_S_contig9834:596..5234-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9834.21480.1 ID=mRNA_Ecto-sp13_S_contig9834.21480.1|Name=mRNA_Ecto-sp13_S_contig9834.21480.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4639bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9834:596..5234- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCGCCGCGTGGTTGAGGTTGTAAGGACCTTGCTTCAACAGCACCAGCAC
CAGCACCAGCAGCACCAGCACATGATGAATCCCCCCGCATATCTGGGGGT
CGATCCACCAACTCACCAACGGCGACGGGCCACCGTTGTAGCCGCGCTTG
CTGTGCACGATCGCGGTGCATCCGAAGCACAGAGAGCTTGGGGAACCTCG
GTGGTTTCTGTGGCTGGGGGAGGATCGAGTTTAGCGTGACGATGATGATG
AGCGACAGCAGGGCGACAGGACAGAGGTGAGTAGCATCAGTTGCATCGTC
TTAAAAACCTCCTCTAATTACCGCTGTCACTACGGGTGATGCTAGACTGA
TGGTCGATGGGTGATAGCCCCCCCCTGCGCATCTAGCTACCGTCCGGAGA
GAGGAGGAACCTGGGACAACGTTGTCGCAACCCAATGAACTACTCTGTGC
AGGGCTATTGAAGTCCAAGTATACATGCACCGCCGCATGTTCTCGATAAG
GATGCCCAAAGTTTTTCGTTTTGCACGTTGAGCAAGGTTGATAACTGTCT
GTTCGACAACAACAAAAAACTGCAAGTACGATCTTCCGCAAGGTTGCACT
GTAAAGACTTCAACACATCCCGTTCGACTGTGGTCATATCTCGAATGGGT
AGTCTTTCTGTGTTTGTATTTATGTTTCCTAATACGTTAGCCTACGTGTA
GCTGCCATTCGGAACAACAACGACACGTTGCCAAAACTTCCTCAATCCAT
CCTTGTGCAAGGGTTCTCAAATTCGAAGTTTAATTACACATGTGTTCCCC
GAACAAACCGGCGAGTTTGGCGGGGTCACCATCACACGGCTCTTTCCGTG
GGACCGAAGCCGTTTGAGGACCCCGCTTTTGCAGCTGCTGTTGCGGTAGA
GCCAGCGCGATAGCTTGTCCCGCCCGCCGCACAATCCCGTCACGTGTTGT
AGAAGTTCTCGTTTCGCGCTTCCGCCTGCTTCGACACTTTGTGTGCTCTA
GTGTGCGGTATTCGACCCCGAAAAGTTCCCTTCGTCGTAACGTGGTACTA
CTACAGCGACGCCCACGTCTGCTCCTACGCGTGCAATCTACTGTAGTCTT
GTGAAAGTTGTCACCAGCAAAGGAGGATGACGGGTGGAAAGGAGCATGTT
TCTTGCGTCCCTAAGTGGGTGTATCCATGAGGTTGGCGCTTTGGCGTGCA
ACAAGCAAGGCACAACGGCGTACGAACGAGGACCACCTTCAATTGATCAG
CAACAATATTCGCGCTGACAACGAAAATGATGTACCGTATATGACACAAG
ATAACACCCCCCTAGGCCGATTTTCAAAGCTCGATTACTCCACGAGGAAG
AGAATGCACAAACGAAACGATACGTTTTCGGAGAGCTCTCGACCAGACGG
CTTCAACGCCGCCGTTTTCGGCGCTGTGACTCTCTCTCCTGTTGAGACGT
CGAGCTTTGAAATTCGGCTCAGGGGGGGTGATTTCTTGTGTCGTATACGG
TACTGCCTGTTCTTGACAGGAACTCAATGGAGCTCCTGAGTCACACATGA
AATTCATACCAAGCGCATGGCACAAATGTTGAGCCTTTTCTCGCACGGAA
GTACAGACAGCCAATGTCCCGCCTCTCCAACATCAACTGTGCGAGATACC
CTCACCTCCACATGGGTAACCCCAACCGCCACGGTGACGCCTCCTGCGCC
TCCCCCCGCCCACACAGGAGCTGGAGCGGATTTGGGCCTTCTATCGGAAC
GAGAGTGACAAATGCGCCTCCAAGCCCAAGATTTCCGGGCGTCCACGACA
CTTCCACCTCCCTTCGACGCCAGCTCCACCGGAAGCGGGGTGGAGGGGGT
TGCACCTGAAGACCTTTCTTCCACCGCAGCGGGCGGCACCGGTGTTGGTC
ACCAGGGCGGCGGTGGCGGCAACAAGGGCAGCAGCAGTGGTGGCGGCGGC
GACGGCCCTGGCGTTTTCACGACGAAGAAGACGACTCTCCTGGATGACCC
AGACCTGCAGTACAGCAGCCCGGTCGTTTCGAATGGTGGGGTGCTGCGTC
CGACCCCTCAGGTGGGATTGGGTTGGACTGTGTGTTGGATGTCTTCTGTT
GAGGAGGTTGGACGATAGTAGGGTACAGCCTCCACGTGACGGGTGTGCCT
GCGAAAAGGAATTAAAATAAGTAGTGTGTGTGTATGTGTTTTTCTTGCTT
GTTCCACACAATCGCGTCTACACGAGGACCGACGGTGTTTGCCTATCCTC
TCCGTCCTCCCGCGTCCACACTTCTGCCCTAGCATACATTGGCGTGGGTA
CCCCCCCTCTCCCGCTCGCGCTCGTCTCAAGGAAAAGGTTCCTGTGCGAA
GTGCTGTCGATCAGCTGGCTATTTTGGACCGTTTCGCCACGCCGGGGGCG
AGGTTGTGTAGGGTTGGGTTACGTAGGGAAGGTTGGGGTTTTGGGGTCGT
GTTGGGTCCACCGGTCGGTCGGTCGGCCGGTCGATCTATTGGTCGGTCGA
TCGGGCGGCCAGATTCGTACGGACTTCTTCATGGTAGCTCGGCTCCTGTG
CGTCACTTCTATCTACATGTTTGTGGCAGAGTGTTTTTGCGCGTTGGTGT
GTGACTCTTTCTTTAGAAGGGCTTGATTGGGCCGTGTTGGTTACAAGTGC
CGCCTATTTGCGCAATCGGTTCACGTGCGATCAGGCCGGTTTCCGGGGTT
GTTTTCTTGCTCTGGTGTTGGGTTCGTCTTCACCCCAACCGTGTCGGGTT
GGGCTGGGTTGGGTTGAGTTGGGTTGGGGTTGGACCGCCTTCTTCGATCA
CGCCGCCGTCGCTCTGTCTATTGTCGGCGTCGTTGCCCTTGTATATATAG
GTCAGAGAACCTGTCTCATTACCTCGTGCCTCAGCATCCAGAGAACGGGG
AGGGATGGACGTCAGTTGGCGATGCCAACGAGAACGGAGAGGCGCCATCA
CTGAAGCACCTGCAACAAAAAATTCAGGCTCAAAAAAAGACAAATTCAAA
AAGTCGACAGGTGCTCAGCAGCCAAGAAGTCTACATAAAACCCACAAGTA
CAGCAGTCGATGACGGGGTCTACCCCCACAGAAGTGTAAAGAAGAAACTA
GCCTATGGCGAAATGAGGGTAGTACCCCCTGTATTCTGTACCGCAGACAA
CAAATTTGTTCTGCGGAGAGCAGTAAGAGATCGTTTGACTGGAATTTGGT
TGTATGCATGGTATAACCTCGTCGGTGCAACGCCAGGAGCCGACCCCCGA
CAACTTTCGTCTTACACGTTGACGAGATGTTTCAAGTAGACGGGAATAAT
CATACGCGGAAGAAATTGTGCAGCTAGAGCGCCACGTTGGCTTTGCCATC
AACCTGCAAATGCCTACAAAGCGAGATGAGAAGGAAGCCGCTATGCGGCG
TTCAACGCTCCTTTTCTATCTCTCCCATCCTTCTTCAAACTTGCTGTATC
GTACCGAGAAAACGAACGACTGAACCAGCCTATCGTCGGCGCAATCCCCA
TTCATGGAGGACAGGACTATCCTCACACACAAAACACTCAAGAGAGATAC
CATGTGCCCATGAAGGACAGGCCTATCCTCTTAAATAACACACAGAAACA
GCCATGAGGAACAGTATGGAGCAGGCGGCCCGTCCATGCCCACTCACTGC
TGTGAGCAGTCCTCCTTTTGCATGCTTACAGAGACGAGCCTATCGATGGA
GAAACGAACCTCGACTGTAGCAAGACGTTCTCACCGACGTGGCGTCTGTC
AACAGTCACCCTCTTCCCGGACGTTCAACCGCCTCACTACTAATTTTGCA
CATGCACAAACAGACGCCGATGTTTACCAACATCAGCAGCAAGTCAGTGT
CCTTCCAGTTTTCTCGCAAGATACTTCGTTGCTGTTGCCATGATACACTG
GGGAATCATTTCTACATCCGCATGTACATGTAAGAGACAACCCTACCCCT
TTCTTTCCTCCAATGTACCCTCCTCTCCTCTCGAATTTCTGTGCACTCCC
AACCGCACGTTCAATAACGTTTTCACGGAGGGCAACCACCATCTCACTCT
GCGCCGAGCCACCGCATCCGTCGTGCATGCCACTTGGCAGTAACAAAGCC
CAAACCACGACCGTCCCAAAGCCTTGTGCCTCCGAAACCCCCTTTTCTCC
ACACACGACAAACACACGAATCAACGCACGCGCGGAACGCAAGGAACGGT
GCCCTCCTGTTTACCCCGGGCGAGCACACACATATCCTCCCGTTCAATGG
AACAGCGATGCCAGGGGAACGTCGCCGACGCCGCTGGATGTCTGGATGTA
CTGAAGATGGTTTATGCAGCAACCAACCGTGATTAATTTGGCGCGGTGCA
TTTTAAAACAGGACGCATTTGCGTCCCCACCAAAACCACGGGTCGTCCTC
TACATACACCCACCAAGTACGTGATCGCCAGCATCAAAGGCGCAAACGCT
CTCCTGCTCGTCACGTGTCTCCTTACATACCATCCCTGCCTGATCCTTTC
CTAAATGCTAAAAAACAAGGTCTCCTCCTCACGCGCCGCCGATCCTGCCG
TCATGATGCCAGCGAGTAGTCCAGCCGTTGCTGAACAGCGTGGAAGTCGC
AATCAAGAGCCTATAGCCATGTAGGGTGCGCGATCTAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9834:596..5234-

>mRNA_Ecto-sp13_S_contig9834.21480.1 ID=mRNA_Ecto-sp13_S_contig9834.21480.1|Name=mRNA_Ecto-sp13_S_contig9834.21480.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9834:596..5234- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCCTCCAAGCCCAAGATTTCCGGGCGTCCACGACACTTCCACCTCC
CTTCGACGCCAGCTCCACCGGAAGCGGGGTGGAGGGGGTTGCACCTGAAG
ACCTTTCTTCCACCGCAGCGGGCGGCACCGGTGTTGGTCACCAGGGCGGC
GGTGGCGGCAACAAGGGCAGCAGCAGTGGTGGCGGCGGCGACGGCCCTGG
CGTTTTCACGACGAAGAAGACGACTCTCCTGGATGACCCAGACCTGCAGT
ACAGCAGCCCGGTCGTTTCGAATGGTGGGGTGCTGCGTCCGACCCCTCAG
GTCTCCTCCTCACGCGCCGCCGATCCTGCCGTCATGATGCCAGCGAGTAG
TCCAGCCGTTGCTGAACAGCGTGGAAGTCGCAATCAAGAGCCTATAGCCA
TGTAG
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