mRNA_Ecto-sp13_S_contig9830.21477.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9830.21477.1
Unique NamemRNA_Ecto-sp13_S_contig9830.21477.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9830.21477.1 vs. uniprot
Match: A0A6H5KV29_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KV29_9PHAE)

HSP 1 Score: 287 bits (734), Expect = 4.380e-89
Identity = 143/161 (88.82%), Postives = 147/161 (91.30%), Query Frame = 1 
Query:   40 MPNGGKTRERVAGIAAPGDPVGLSAPSAKRSIGRLVERISLKLGNNNVMATAGAAAGRDGDGGGRRRQYVRTFEEEHPYKQPLLVKSFDGDVAAGRPTDLPGEFIGDQRRSDSWKTDDAAEQGRYDAAEARGYGLYSLHAVLGQGTFGRIHLASWRHRGGG 522
            MPNGG+ RERVAG AAPG  +GLS PSAKRSIGRLVERISLKLGNN+VM TAGAAA RDGDGGGRR QYVRTFE+EHP KQPLLVKSFDGDVAAGRP  LPGEFIGD RRSDSWK D AAEQGRYDAAEARGYGLYSLHAVLGQGTFGRIHLASWRHRGGG
Sbjct:    1 MPNGGRARERVAGTAAPGASLGLSTPSAKRSIGRLVERISLKLGNNDVMETAGAAAARDGDGGGRRGQYVRTFEDEHPCKQPLLVKSFDGDVAAGRPAGLPGEFIGDHRRSDSWKIDGAAEQGRYDAAEARGYGLYSLHAVLGQGTFGRIHLASWRHRGGG 161
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9830.21477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KV29_9PHAE4.380e-8988.82Protein kinase domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9830contigEcto-sp13_S_contig9830:816..3289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score309.3
Seed ortholog evalue1.4e-81
Seed eggNOG ortholog2880.D8LH93
Model size663
KEGG koko:K08793,ko:K13303
KEGG Pathwayko04068,ko04151,map04068,map04151
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0603@1,KOG0603@2759
Ec32 ortholog descriptioncAMP-dependent protein kinase catalytic subunit (PKA)-like
Ec32 orthologEc-24_001050.1
EC2.7.11.1
Cds size660
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464246.2074292-CDS-Ecto-sp13_S_contig9830:816..11791681464246.2074292-CDS-Ecto-sp13_S_contig9830:816..1179Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9830 817..1179 -
1681464246.2246025-CDS-Ecto-sp13_S_contig9830:2992..32891681464246.2246025-CDS-Ecto-sp13_S_contig9830:2992..3289Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9830 2993..3289 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9830.21477.1prot_Ecto-sp13_S_contig9830.21477.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9830 817..3289 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9830.21477.1

>prot_Ecto-sp13_S_contig9830.21477.1 ID=prot_Ecto-sp13_S_contig9830.21477.1|Name=mRNA_Ecto-sp13_S_contig9830.21477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=220bp
HISHTHTRCVTRSMPNGGKTRERVAGIAAPGDPVGLSAPSAKRSIGRLVE
RISLKLGNNNVMATAGAAAGRDGDGGGRRRQYVRTFEEEHPYKQPLLVKS
FDGDVAAGRPTDLPGEFIGDQRRSDSWKTDDAAEQGRYDAAEARGYGLYS
LHAVLGQGTFGRIHLASWRHRGGGLAAAASSSASLEDGPSSHGGGGGRAA
GAGGVGAGETRERRTTPRAR
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mRNA from alignment at Ecto-sp13_S_contig9830:816..3289-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9830.21477.1 ID=mRNA_Ecto-sp13_S_contig9830.21477.1|Name=mRNA_Ecto-sp13_S_contig9830.21477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2474bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9830:816..3289- (Ectocarpus species13 EcNAP12_S_4_19m)
CACATCTCGCACACGCACACGCGCTGTGTCACGCGTAGCATGCCCAACGG
CGGAAAAACACGCGAGAGAGTAGCTGGAATCGCCGCCCCGGGTGACCCAG
TAGGACTCTCGGCACCGTCGGCGAAAAGGTCGATTGGGCGCTTGGTTGAG
CGCATTTCTCTCAAGCTCGGGAACAACAACGTCATGGCGACAGCGGGTGC
TGCTGCTGGGAGAGATGGGGACGGAGGGGGGAGGAGGAGACAATACGTTA
GAACGTTCGAGGAAGAGCATCCTTACAAGCAGCCTCTTCTGGTGAAGGTG
AGCTCGTCTGCTCTGTCGTGTATCTTGCTTGCGTGTGTGTGTGCGGAAAT
TTCCTGAACACGTGCTTGGGCGTGGTGTGTTGGCGCCTTTTCGCCCGCAT
GGACCGTGACAGCAGTCCTTGACAGCAGTACAGCAGTCAATGTTGTAGTG
TACTGCTGTAGGCGAGCAGAGGGTTGTCCGGACTTGATGAGGTTTGATTG
GGATCTGTTTAACACGGAACATTGTCGGGGGACCTTCGCAGATGATCGAT
CCACACGTACACTCTGGGACACAATCGCCGCGCATTGTACTCCTACTACA
TGCACACAGCAGTGTGTTGATGTGGTGTCAAAATACCTTGCTCTTGCACA
GCATACAGCAAAGTGGGCCCTCCCGAATCAGGCGGTCTCAATGAGGCGGG
CGCTGTAAACAAGGCGGGTGTTGGCTGGCATGGACGGAATAGTCGAGTTG
TTCCACACATTGAATAGGCTGCTGCCCCATGTAAGGCTGAGGCGGTCATT
ATCAGCTGCCCCACCACCGCCTTACTCGGGACCACAGCTGTACTCTAAGG
GAATGCCATGAGAAACACGACCCTCCCCCTCCAGTGCTCCGCTCTCTCAA
GCGTACCCATCTCCTCCTGAGCCCCAACACTGCTGTTGTTGTTGAAGCAA
AAGGTGCAGCATCGTCTAGCGATTTTAGAGAACACCCCCAAACATGGAAG
ACCAATCCCGACACAATGAAAGACTCGCCAGGACTTAGCTGTTTTCGCTG
TCAAGGCTCAGTGATGCCGCCTTGTTGGACACGCTTAACATGTTGTAAGT
TTTGAGCGGTGGCAAAAATCGGGTACACCCGGTCCACACACGGCCATATT
CGGGTACCCCTACAAGACGCTGCTTGGAGCGACCGCATGTCACCATCTGA
TTGGCCGACGCCCACTCCTACCCGACCTCGACCGTCTTTCCATCGGGTGC
ACCCGATCTTGGCTACTCACCCCCCGTAGGGGTACCCGGTTTTTCTTTCC
CCTACCCGAAAATGGCTGAGCTGTTCGACCAAACCCCATGCACACAATCA
CGGGTCGGAAGCACAACACTAGCCCTCGTTTGTCGCCAATGAAATAGTTG
TGGGAGGGAGAGAGTGTTTATATTTTTTAAATGAGTTCCGTGTGTGTCGC
AGGTCGTGAGGGAGGTTTTCATCCAGCTCGTCTTCTCGATCATTTGCACA
GACCGCCTGCCGTTTCCCCCAAGGGAGACCTCCACCGCCGGCGGGGGGTC
TGCCTCCGCCCGAACGTCCGAATTCGAGGGCAGGGCGTTGCTGACGTGTA
CTTGTGTGCATGGGGTTTGGTCGAACAGGTCAGCCATTTTCGGATAGGGG
AAAGAAAAACCGGGTACCCCTACGGGGGGTGAGTAGCCAAGATCGGGTGC
ACCCGATGGAAAGACGGTCGAGGTCGGGTAGGAGTGGGCGTCGGCCAATC
AGATGGTGGCATGCGGTCGCTCCCAGCAGCGTCTTGTAGGGGTACCCGAA
TATGGCCGTGTGTGGACCGGGTGTACCCGATTTTGGCCACTGCAATTACG
TTTTCTCCTAAGTACAGCCACGTCGGACACAGCTCGTCTATTTCCTTCCT
CCCCGACGAACCACACGGGGAACGTGAACCTTTATTGGAAAACCCTTTTT
TCGTTGGCATTTGACAAGTCGGACCCTCTACGCTTCATCTCTCTCTCTCT
ACCGGCGTGTCATATTGCCTTGGTACAGCAGTATGCCTTCCTGCCGACGC
AACCACGCTGTCCTACAGTACCTTTCCTTGTCTCTCCTTTTCTTTAATAA
ACTATGATAGAGCTTCGACGGAGATGTCGCCGCCGGTCGTCCGACCGACC
TCCCCGGGGAGTTCATCGGAGATCAGAGGCGTTCCGACAGCTGGAAGACC
GACGACGCTGCCGAGCAGGGGCGCTACGACGCCGCCGAGGCGCGGGGGTA
CGGCCTCTACTCCCTCCACGCCGTCCTCGGGCAAGGAACCTTCGGCCGCA
TCCACCTCGCCTCCTGGCGGCACCGCGGGGGCGGGCTTGCCGCGGCAGCA
TCATCGTCCGCGTCGCTTGAGGACGGCCCATCGTCGCATGGTGGTGGTGG
TGGTCGTGCGGCTGGAGCAGGAGGGGTAGGCGCGGGAGAAACACGGGAGA
GAAGGACTACTCCACGTGCCAGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9830:816..3289-

>mRNA_Ecto-sp13_S_contig9830.21477.1 ID=mRNA_Ecto-sp13_S_contig9830.21477.1|Name=mRNA_Ecto-sp13_S_contig9830.21477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=660bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9830:816..3289- (Ectocarpus species13 EcNAP12_S_4_19m)
CACATCTCGCACACGCACACGCGCTGTGTCACGCGTAGCATGCCCAACGG
CGGAAAAACACGCGAGAGAGTAGCTGGAATCGCCGCCCCGGGTGACCCAG
TAGGACTCTCGGCACCGTCGGCGAAAAGGTCGATTGGGCGCTTGGTTGAG
CGCATTTCTCTCAAGCTCGGGAACAACAACGTCATGGCGACAGCGGGTGC
TGCTGCTGGGAGAGATGGGGACGGAGGGGGGAGGAGGAGACAATACGTTA
GAACGTTCGAGGAAGAGCATCCTTACAAGCAGCCTCTTCTGGTGAAGAGC
TTCGACGGAGATGTCGCCGCCGGTCGTCCGACCGACCTCCCCGGGGAGTT
CATCGGAGATCAGAGGCGTTCCGACAGCTGGAAGACCGACGACGCTGCCG
AGCAGGGGCGCTACGACGCCGCCGAGGCGCGGGGGTACGGCCTCTACTCC
CTCCACGCCGTCCTCGGGCAAGGAACCTTCGGCCGCATCCACCTCGCCTC
CTGGCGGCACCGCGGGGGCGGGCTTGCCGCGGCAGCATCATCGTCCGCGT
CGCTTGAGGACGGCCCATCGTCGCATGGTGGTGGTGGTGGTCGTGCGGCT
GGAGCAGGAGGGGTAGGCGCGGGAGAAACACGGGAGAGAAGGACTACTCC
ACGTGCCAGA
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