mRNA_Ecto-sp13_S_contig9813.21467.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9813.21467.1
Unique NamemRNA_Ecto-sp13_S_contig9813.21467.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9813.21467.1 vs. uniprot
Match: A0A6H5JD34_9PHAE (AAA domain-containing protein n=3 Tax=PX clade TaxID=569578 RepID=A0A6H5JD34_9PHAE)

HSP 1 Score: 416 bits (1070), Expect = 7.760e-144
Identity = 215/218 (98.62%), Postives = 215/218 (98.62%), Query Frame = 1 
Query:    1 MAAASSGRDLGVHSYYQGKIDEMELVVRDRTQNLERLKAQRNELNAKVRLLREELHHLQESGSYVGEVVKAMGKKKVLVKVNPEGKYVVDIDKDIDVNKCTPNTRVALRNDSYVLHKILPTKVDPLVSLMKVEKVPDSTYDMIGGLEKQIREIKEVIELPIKHPELFESLGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGE 654
            MAAASSGRDLGVHSYYQGKIDEMELVVRDRTQNLERLKAQRNELNAKVRLLREELHHLQESGSYVGEVVKAMGKKKVLVKVNPEGKYVVDIDKDIDVNKCTPNTRVALRNDSYVLHKILPTKVDPLVSLMKVEKVPDSTYDMIGGLEKQIREIKEVIELPIKHPELFESLG   PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGE
Sbjct:   25 MAAASSGRDLGVHSYYQGKIDEMELVVRDRTQNLERLKAQRNELNAKVRLLREELHHLQESGSYVGEVVKAMGKKKVLVKVNPEGKYVVDIDKDIDVNKCTPNTRVALRNDSYVLHKILPTKVDPLVSLMKVEKVPDSTYDMIGGLEKQIREIKEVIELPIKHPELFESLG---PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGE 239
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9813.21467.1 vs. uniprot
Match: A0A7S2XYY8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYY8_9STRA)

HSP 1 Score: 389 bits (998), Expect = 1.000e-134
Identity = 193/211 (91.47%), Postives = 205/211 (97.16%), Query Frame = 1 
Query:   22 RDLGVHSYYQGKIDEMELVVRDRTQNLERLKAQRNELNAKVRLLREELHHLQESGSYVGEVVKAMGKKKVLVKVNPEGKYVVDIDKDIDVNKCTPNTRVALRNDSYVLHKILPTKVDPLVSLMKVEKVPDSTYDMIGGLEKQIREIKEVIELPIKHPELFESLGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGE 654
            +D G+HSYYQ K+DE+E+VVR++T NL+RLKAQRNELNAKVRLLREELHHLQE GSYVGEVVK MGKKKVLVKV PEGKYVVD+DKDID+NKCTPNTRVALRNDSYVLHKILPTKVDPLVSLMKVEKVPDS+YDMIGGL+KQIREIKEVIELPIKHPELFESLGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGE
Sbjct:   36 KDAGIHSYYQSKLDELEIVVREKTNNLQRLKAQRNELNAKVRLLREELHHLQEPGSYVGEVVKPMGKKKVLVKVPPEGKYVVDLDKDIDMNKCTPNTRVALRNDSYVLHKILPTKVDPLVSLMKVEKVPDSSYDMIGGLDKQIREIKEVIELPIKHPELFESLGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGE 246
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9813.21467.1 vs. uniprot
Match: A0A4D9CPY1_9STRA (AAA domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CPY1_9STRA)

HSP 1 Score: 384 bits (985), Expect = 4.520e-131
Identity = 191/212 (90.09%), Postives = 202/212 (95.28%), Query Frame = 1 
Query:   19 GRDLGVHSYYQGKIDEMELVVRDRTQNLERLKAQRNELNAKVRLLREELHHLQESGSYVGEVVKAMGKKKVLVKVNPEGKYVVDIDKDIDVNKCTPNTRVALRNDSYVLHKILPTKVDPLVSLMKVEKVPDSTYDMIGGLEKQIREIKEVIELPIKHPELFESLGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGE 654
            G D GV SYY  KIDE+E+VVR+RTQNL+RLKAQRNE NAKVRLLREELHHLQE GSYVGEVVKAMGK KVLVKVNPEGKYVVD+DKD+D+NKCTPNTRVALRNDSY LHKILPTKVDPLVSLMKVE VPDSTYDMIGGL+KQ+REIKEVIELPIKHPELFE+LGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG+ELVQKYIGE
Sbjct:   18 GEDKGVRSYYLSKIDELEVVVRERTQNLQRLKAQRNEWNAKVRLLREELHHLQEPGSYVGEVVKAMGKTKVLVKVNPEGKYVVDLDKDVDINKCTPNTRVALRNDSYTLHKILPTKVDPLVSLMKVEAVPDSTYDMIGGLDKQVREIKEVIELPIKHPELFEALGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGE 229
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9813.21467.1 vs. uniprot
Match: A0A6V1RDP8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RDP8_HETAK)

HSP 1 Score: 381 bits (978), Expect = 5.970e-130
Identity = 187/218 (85.78%), Postives = 205/218 (94.04%), Query Frame = 1 
Query:    1 MAAASSGRDLGVHSYYQGKIDEMELVVRDRTQNLERLKAQRNELNAKVRLLREELHHLQESGSYVGEVVKAMGKKKVLVKVNPEGKYVVDIDKDIDVNKCTPNTRVALRNDSYVLHKILPTKVDPLVSLMKVEKVPDSTYDMIGGLEKQIREIKEVIELPIKHPELFESLGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGE 654
            M       ++G+ +YYQ KIDE+E+ +R++T NL+RL+AQRNELNAKVRLLREEL+HLQE GSYVGEVVKAMGK KVLVKVNPEGKYVVDIDKDID+NKCTPNTRVALRNDSYVLHKILPTKVDPLVSLMKVEKVPDSTYDM+GGL+KQIREIKEVIELPIKHPELF+SLGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTF+RVSG+ELVQKYIGE
Sbjct:   15 MEVDGEKEEVGIQTYYQSKIDELEITIREKTNNLQRLQAQRNELNAKVRLLREELYHLQEPGSYVGEVVKAMGKDKVLVKVNPEGKYVVDIDKDIDINKCTPNTRVALRNDSYVLHKILPTKVDPLVSLMKVEKVPDSTYDMVGGLDKQIREIKEVIELPIKHPELFDSLGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFVRVSGAELVQKYIGE 232
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9813.21467.1 vs. uniprot
Match: A0A7S2W1P0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W1P0_9STRA)

HSP 1 Score: 380 bits (975), Expect = 1.110e-129
Identity = 189/213 (88.73%), Postives = 201/213 (94.37%), Query Frame = 1 
Query:   16 SGRDLGVHSYYQGKIDEMELVVRDRTQNLERLKAQRNELNAKVRLLREELHHLQESGSYVGEVVKAMGKKKVLVKVNPEGKYVVDIDKDIDVNKCTPNTRVALRNDSYVLHKILPTKVDPLVSLMKVEKVPDSTYDMIGGLEKQIREIKEVIELPIKHPELFESLGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGE 654
            +G   G+ SYYQ KIDE+EL+VRD+ +NL RL AQRNELNA+VRLLREELHHLQE GSYVGEVVKAMGK KVLVKVNPEGKYVVD+DKDID+NKC PNTRVALRNDSY LHKILPTKVDPLVSLMKVEKVPDSTYDM+GGL+KQIREIKEVIELPIKHPELFESLGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG+ELVQKYIGE
Sbjct:    8 AGEAAGLQSYYQSKIDELELIVRDKAKNLARLTAQRNELNARVRLLREELHHLQEPGSYVGEVVKAMGKTKVLVKVNPEGKYVVDLDKDIDINKCLPNTRVALRNDSYALHKILPTKVDPLVSLMKVEKVPDSTYDMVGGLDKQIREIKEVIELPIKHPELFESLGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGE 220
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9813.21467.1 vs. uniprot
Match: H3G4Y1_PHYRM (AAA domain-containing protein n=4 Tax=Peronosporaceae TaxID=4777 RepID=H3G4Y1_PHYRM)

HSP 1 Score: 365 bits (938), Expect = 3.000e-125
Identity = 185/218 (84.86%), Postives = 199/218 (91.28%), Query Frame = 1 
Query:    1 MAAASSGRDLGVHSYYQGKIDEMELVVRDRTQNLERLKAQRNELNAKVRLLREELHHLQESGSYVGEVVKAMGKKKVLVKVNPEGKYVVDIDKDIDVNKCTPNTRVALRNDSYVLHKILPTKVDPLVSLMKVEKVPDSTYDMIGGLEKQIREIKEVIELPIKHPELFESLGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGE 654
            +A  S+    G+ SYY+ KI+ +EL VRD TQNL RL+AQRNELN+KVRLLREEL  LQE GSYVGEVVK MGK KVLVKVNPEGKYVVD+DK ID+ KCTPNTRVALRNDSYVLHKILPTKVDPLVSLMKVEKVPDSTYDMIGGL+KQIREIKEVIELPIKHPELF++LGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG+ELVQKYIGE
Sbjct:    4 VAMTSADDSAGLTSYYEQKIEHLELTVRDETQNLRRLQAQRNELNSKVRLLREELQLLQEPGSYVGEVVKQMGKSKVLVKVNPEGKYVVDVDKTIDITKCTPNTRVALRNDSYVLHKILPTKVDPLVSLMKVEKVPDSTYDMIGGLDKQIREIKEVIELPIKHPELFDALGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGE 221
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9813.21467.1 vs. uniprot
Match: K3WH84_GLOUD (AAA domain-containing protein n=11 Tax=Oomycota TaxID=4762 RepID=K3WH84_GLOUD)

HSP 1 Score: 366 bits (940), Expect = 2.430e-124
Identity = 186/216 (86.11%), Postives = 199/216 (92.13%), Query Frame = 1 
Query:    7 AASSGRDLGVHSYYQGKIDEMELVVRDRTQNLERLKAQRNELNAKVRLLREELHHLQESGSYVGEVVKAMGKKKVLVKVNPEGKYVVDIDKDIDVNKCTPNTRVALRNDSYVLHKILPTKVDPLVSLMKVEKVPDSTYDMIGGLEKQIREIKEVIELPIKHPELFESLGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGE 654
            A S   + G+ SYYQ KI+ +EL VRD+TQNL RL+AQRNELN+KVRLLREEL  LQE GSYVGEVVK MGK KVLVKVNPEGKYVVD+DK ID+ KC+PNTRVALRNDSYVLHKILPTKVDPLVSLMKVEKVPDSTYDMIGGL+KQIREIKEVIELPIKHPELFE+LGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG+ELVQKYIGE
Sbjct:    8 AKSGSANAGLTSYYQQKIEHLELTVRDKTQNLRRLQAQRNELNSKVRLLREELQLLQEPGSYVGEVVKQMGKTKVLVKVNPEGKYVVDVDKAIDITKCSPNTRVALRNDSYVLHKILPTKVDPLVSLMKVEKVPDSTYDMIGGLDKQIREIKEVIELPIKHPELFEALGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGE 223
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9813.21467.1 vs. uniprot
Match: A0A7R9UFA4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFA4_9STRA)

HSP 1 Score: 363 bits (933), Expect = 2.900e-123
Identity = 180/209 (86.12%), Postives = 197/209 (94.26%), Query Frame = 1 
Query:   28 LGVHSYYQGKIDEMELVVRDRTQNLERLKAQRNELNAKVRLLREELHHLQESGSYVGEVVKAMGKKKVLVKVNPEGKYVVDIDKDIDVNKCTPNTRVALRNDSYVLHKILPTKVDPLVSLMKVEKVPDSTYDMIGGLEKQIREIKEVIELPIKHPELFESLGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGE 654
            LG+ SYYQ +IDE+E++VR++T+NL RLKAQRNELNAKVR LR+EL+HLQE GSYVGEVVK MG+ KVLVKVNP+GKYVVD+DKDID+  CT  TRVALRNDSY +HKILPTK+DPLVSLMKVEKVPDSTYDMIGGL+KQIREIKEVIELPIKHPELFESLGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGE
Sbjct:   15 LGIESYYQSRIDELEILVREKTKNLRRLKAQRNELNAKVRQLRDELYHLQEPGSYVGEVVKQMGRGKVLVKVNPDGKYVVDVDKDIDIKLCTSTTRVALRNDSYQIHKILPTKIDPLVSLMKVEKVPDSTYDMIGGLDKQIREIKEVIELPIKHPELFESLGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGE 223
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9813.21467.1 vs. uniprot
Match: A0A3R6Y5U9_9STRA (AAA domain-containing protein n=13 Tax=Saprolegniaceae TaxID=4764 RepID=A0A3R6Y5U9_9STRA)

HSP 1 Score: 361 bits (926), Expect = 2.580e-122
Identity = 184/218 (84.40%), Postives = 198/218 (90.83%), Query Frame = 1 
Query:    1 MAAASSGRDLGVHSYYQGKIDEMELVVRDRTQNLERLKAQRNELNAKVRLLREELHHLQESGSYVGEVVKAMGKKKVLVKVNPEGKYVVDIDKDIDVNKCTPNTRVALRNDSYVLHKILPTKVDPLVSLMKVEKVPDSTYDMIGGLEKQIREIKEVIELPIKHPELFESLGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGE 654
            M   + G + G+ SYY+ KI+ +EL VRD+T NL RL+AQRNELN+KVRLLREEL  LQE GSYVGEVVK MGK KVLVKVNPEGKYVVD+DK ID+ KCTPNTRVALRNDSYVLHKILPTKVDPLVSLMKVEKVPDSTYDMIGGL+KQIREIKEVIELPIKHPELF +LGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG+ELVQKYIGE
Sbjct:    1 MTGITDGSE-GLTSYYRQKIEHLELTVRDKTMNLRRLQAQRNELNSKVRLLREELQLLQEPGSYVGEVVKQMGKSKVLVKVNPEGKYVVDVDKAIDITKCTPNTRVALRNDSYVLHKILPTKVDPLVSLMKVEKVPDSTYDMIGGLDKQIREIKEVIELPIKHPELFNALGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGE 217
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9813.21467.1 vs. uniprot
Match: A0A7S2CFJ7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CFJ7_9STRA)

HSP 1 Score: 361 bits (926), Expect = 4.960e-122
Identity = 178/211 (84.36%), Postives = 198/211 (93.84%), Query Frame = 1 
Query:   22 RDLGVHSYYQGKIDEMELVVRDRTQNLERLKAQRNELNAKVRLLREELHHLQESGSYVGEVVKAMGKKKVLVKVNPEGKYVVDIDKDIDVNKCTPNTRVALRNDSYVLHKILPTKVDPLVSLMKVEKVPDSTYDMIGGLEKQIREIKEVIELPIKHPELFESLGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGE 654
            +++G++S+YQ KIDE+E+V R++ QNL R+ AQRNELNA+VRLLREELH+LQE GSYVGEVVK MGK K+LVKVNPEGKYVVD+   ID+ KCTPNTRVALRNDSY LHKILPTKVDPLVSLMKVEKVPDSTYDM+GGL+KQIREIKEVIELPIKHPELF+SLGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG+ELVQKYIGE
Sbjct:   25 KEIGLNSFYQSKIDELEIVAREKVQNLARITAQRNELNARVRLLREELHYLQEPGSYVGEVVKPMGKTKILVKVNPEGKYVVDLGAGIDMAKCTPNTRVALRNDSYSLHKILPTKVDPLVSLMKVEKVPDSTYDMVGGLDKQIREIKEVIELPIKHPELFDSLGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGE 235
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9813.21467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JD34_9PHAE7.760e-14498.62AAA domain-containing protein n=3 Tax=PX clade Tax... [more]
A0A7S2XYY8_9STRA1.000e-13491.47Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A4D9CPY1_9STRA4.520e-13190.09AAA domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A6V1RDP8_HETAK5.970e-13085.78Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2W1P0_9STRA1.110e-12988.73Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
H3G4Y1_PHYRM3.000e-12584.86AAA domain-containing protein n=4 Tax=Peronosporac... [more]
K3WH84_GLOUD2.430e-12486.11AAA domain-containing protein n=11 Tax=Oomycota Ta... [more]
A0A7R9UFA4_9STRA2.900e-12386.12Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A3R6Y5U9_9STRA2.580e-12284.40AAA domain-containing protein n=13 Tax=Saprolegnia... [more]
A0A7S2CFJ7_9STRA4.960e-12284.36Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9813contigEcto-sp13_S_contig9813:347..2980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score428.7
Seed ortholog evalue1.6e-117
Seed eggNOG ortholog2880.D8LKV9
Preferred namePSMC5
Model size654
KEGG koko:K03066
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000428,GO:0000502,GO:0001664,GO:0003674,GO:0003824,GO:0004175,GO:0004176,GO:0005102,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0005737,GO:0005829,GO:0005838,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006401,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007088,GO:0007346,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008540,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010646,GO:0010941,GO:0010965,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016075,GO:0016234,GO:0016462,GO:0016579,GO:0016591,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017025,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019904,GO:0019941,GO:0022607,GO:0022624,GO:0023051,GO:0030071,GO:0030162,GO:0030163,GO:0030433,GO:0030554,GO:0030880,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031334,GO:0031410,GO:0031531,GO:0031595,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032270,GO:0032436,GO:0032553,GO:0032555,GO:0032559,GO:0032784,GO:0032786,GO:0032806,GO:0032968,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033554,GO:0034243,GO:0034515,GO:0034622,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0034976,GO:0035639,GO:0036094,GO:0036211,GO:0036402,GO:0036503,GO:0042176,GO:0042221,GO:0042623,GO:0042802,GO:0043067,GO:0043069,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043248,GO:0043254,GO:0043412,GO:0043433,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044456,GO:0044464,GO:0044798,GO:0045202,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045892,GO:0045893,GO:0045898,GO:0045899,GO:0045931,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050804,GO:0050896,GO:0051090,GO:0051091,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051427,GO:0051428,GO:0051603,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0055029,GO:0060255,GO:0060260,GO:0060261,GO:0060548,GO:0061136,GO:0061695,GO:0062033,GO:0065003,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0070651,GO:0070682,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090068,GO:0090083,GO:0090261,GO:0090304,GO:0090575,GO:0097159,GO:0097367,GO:0097708,GO:0098794,GO:0099170,GO:0099177,GO:0099574,GO:0099576,GO:0140096,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1902554,GO:1902679,GO:1902680,GO:1902911,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903506,GO:1903507,GO:1903508,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990234,GO:2000112,GO:2000113,GO:2000142,GO:2000144,GO:2001141,GO:2001252
Exons4
EggNOG free text desc.proteasome-activating ATPase activity
EggNOG OGsCOG0554@1,KOG0728@2759
Cds size654
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03051
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464245.1676493-CDS-Ecto-sp13_S_contig9813:346..4781681464245.1676493-CDS-Ecto-sp13_S_contig9813:346..478Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9813 347..478 -
1681464245.1836507-CDS-Ecto-sp13_S_contig9813:799..9551681464245.1836507-CDS-Ecto-sp13_S_contig9813:799..955Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9813 800..955 -
1681464245.193181-CDS-Ecto-sp13_S_contig9813:1601..17391681464245.193181-CDS-Ecto-sp13_S_contig9813:1601..1739Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9813 1602..1739 -
1681464245.2032745-CDS-Ecto-sp13_S_contig9813:2752..29801681464245.2032745-CDS-Ecto-sp13_S_contig9813:2752..2980Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9813 2753..2980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9813.21467.1prot_Ecto-sp13_S_contig9813.21467.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9813 347..2980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9813.21467.1

>prot_Ecto-sp13_S_contig9813.21467.1 ID=prot_Ecto-sp13_S_contig9813.21467.1|Name=mRNA_Ecto-sp13_S_contig9813.21467.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=218bp
MAAASSGRDLGVHSYYQGKIDEMELVVRDRTQNLERLKAQRNELNAKVRL
LREELHHLQESGSYVGEVVKAMGKKKVLVKVNPEGKYVVDIDKDIDVNKC
TPNTRVALRNDSYVLHKILPTKVDPLVSLMKVEKVPDSTYDMIGGLEKQI
REIKEVIELPIKHPELFESLGVAQPKGVLLYGPPGTGKTLLARAVAHHTD
CTFIRVSGSELVQKYIGE
back to top

mRNA from alignment at Ecto-sp13_S_contig9813:347..2980-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9813.21467.1 ID=mRNA_Ecto-sp13_S_contig9813.21467.1|Name=mRNA_Ecto-sp13_S_contig9813.21467.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2634bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9813:347..2980- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGCAGCTTCTTCCGGGCGAGATCTCGGGGTGCACTCGTACTACCA
GGGAAAAATCGACGAGATGGAGCTGGTGGTGAGGGATCGGACACAGAACC
TCGAGCGGCTCAAGGCGCAACGCAACGAGCTGAACGCCAAGGTTCGGCTG
TTGCGAGAGGAGCTGCACCACCTTCAGGAGTCGGGATCGTACGTGGGGGA
GGTGGTGAAGGCCATGGGGAAGAAGAAGGTGCGAAGTGTGCACGCTCTAC
ACGCTGATTTTATGACACGTTCCGATGTTTTTGCTTGTGTGCATCTCTCG
CTCTCCCGTTCTCCTTGGAATAAGCTTCTGAGAACGAAGGTGCGTGGAGG
GAGGTATCTCAACAACAGCAGCAGCTCCAGTTGCTGCGGTCTCTACATAC
CCAACGACGTATTGTGGCGTAGCGTTACGTGCCGACGTTCGGAAGTTGCA
CCCTATGCACACACACCGACCGTGTGGGCCATCATCGCGTCGTGGGTGTC
TGCCATTGTGCAACGCTTCTACCCATGGCAGTACTGCTGTTGTCTGTCAT
CCAACAAGGCACTGCTGCTGTTATTGTCCCGCACTCCGCCGCTGACAACC
CTCGACACTCAAACTCAAACACGCACCGACGACAGAAGGTGCCGTCCTTC
CATGATACGGTTAAGGTCTTCTGAAGTGGTCAACCGACACGGCTCCCTCA
ATCCACCCACGCACCACCTGATCTGCAGGAAATTAGCGGTCAATGATGCA
CACCGACGTACTTCTTAGTAGTTCCTTTTGCGGAGTGAGTTCCCCGTCGG
CAGGCAATTCGTTGGCGAGACAGGTTCTTCTCAAGCGTTTCCGCAATATT
TGTGCGCGATCAGGCGGGTGCTTTTCTGGAACGCCAGCTCTACGATATGT
ACATACGAAGAAGCGGAATGACACCACGGGCGGTCACGCTCTGGGATGTG
ATGTCAACCTGTTTTGTTTTCGCACGCCCCAACACATGAACTCCCTTAGC
CCACTCCCGGTTTAACATTTCGTTGTTTCCACGAATCTCGAGTTTGCCAG
AAAGTTGGCACCTTCCGAAGACCGAACACGTGGTTGCTGAAGGTAGGGGC
CAGGCGAGAGCTTAGCTGCAAGAGATGCCCATGCGGAAGCTGCTGCTGCC
GTGAAGCTAAGCACGTCCTGTGTCACGCTGTGTGTAGTAGCTACCGTATT
GCCGACTCCTAAATGCAAACTGCACCCTGGACTTGATGCAGGTCCTGGTG
AAGGTGAATCCCGAGGGAAAGTACGTGGTGGACATCGACAAAGACATCGA
TGTCAACAAGTGCACGCCCAACACGCGCGTCGCTCTGCGCAACGACTCGT
ACGTCCTCCACAAGATTTTGCCGACAAAGGTACGCCGGGAGGGAGTATTG
TGAGAGTTGCTGTACTAGTAATTGTGCCGCGTAACACAGGCTGTCCGTCG
TCCGTTTTGGGAAAAGAGTCGAGATGGCTCTGCTTGTATATCGCACAAGG
GACTGCCATGATTACGGCACTCGCGTGGTTGTTCGATGTCGTCTGGGGTA
GTTCTGGGCGAGATGTGCCAGCGGCGACTCTCACTCAGGCTGCGCCTGGA
CCCACCCCGACACTTTGATCTGTAACATTGGATCGGACGGCACTGCTTGC
TGTACTGTAAGCGTATTTTTCTCTGCGCCATTGAAACCAGAGCAACACCG
CGAAACAATCGTTGTCGTGGTGCAATAAAGTACGAGCTTTTTTTGTCGAT
GGCTCGTCATGGGTTTGGCTGCATCACCAATCCTTACCACCGCGCGAGGC
AATGTCTACTTCGGTTCGACGGTGTTGCTAACAATCCCGCACCCTGCAGC
AGGAGGAGTTGTTTCCGACTCATTTGTTTGATTATCGTCGTTCTTGATGT
ACCCTTGCTTGGCGCAGTCCCTATCCTCCACTGTCACACTTCAGTACCTA
TTGTTGTCGAATTGATGTCCACGTTTTCTGGATACATGCACCTTCGTCCT
GCTGTATCTTCGTTTGTCCTTCCAGGTGGACCCGCTGGTGAGCCTGATGA
AGGTGGAGAAGGTGCCAGACTCAACCTACGACATGATCGGTGGGCTGGAA
AAGCAGATCAGGGAGATCAAGGAAGTAATCGAGCTACCAATCAAGCATCC
GGAGCTGTTCGAGTCGCTGGGCGTCGCTCAGGTAACCACGGATCTAGCAC
CCCATACCAGTCGACTCCGGCCACGTTGGATATTTTACCTGCAAGGCCTT
GACAATGTTGCCCGCCCGTATGTAGTGGCGAAGGGTCATCATGGCTAGCA
ACACGTTATTCTCGTGGTAGCATCACTGCCAATGGTCACAAGGTAGACTG
ACAAGCAACATCCCCGCCCCACATGTCCCCCGAGCTCGCAAATGTCTCCT
TGCGGTTTGCGCGATGCTCTTGCCGCGGCGACTCTTGAAGAAGACGCGGC
CAAAGCTGGGAACGCTCATCCTCCCCAACCGCCGTTTTCCCTCGTCGTGC
AGCCCAAGGGCGTCCTCTTGTATGGACCCCCTGGGACGGGGAAGACGCTT
CTGGCACGGGCCGTGGCACATCACACCGACTGCACCTTCATCCGCGTGTC
GGGGTCGGAGCTGGTGCAGAAGTACATTGGAGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9813:347..2980-

>mRNA_Ecto-sp13_S_contig9813.21467.1 ID=mRNA_Ecto-sp13_S_contig9813.21467.1|Name=mRNA_Ecto-sp13_S_contig9813.21467.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=654bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9813:347..2980- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGCAGCTTCTTCCGGGCGAGATCTCGGGGTGCACTCGTACTACCA
GGGAAAAATCGACGAGATGGAGCTGGTGGTGAGGGATCGGACACAGAACC
TCGAGCGGCTCAAGGCGCAACGCAACGAGCTGAACGCCAAGGTTCGGCTG
TTGCGAGAGGAGCTGCACCACCTTCAGGAGTCGGGATCGTACGTGGGGGA
GGTGGTGAAGGCCATGGGGAAGAAGAAGGTCCTGGTGAAGGTGAATCCCG
AGGGAAAGTACGTGGTGGACATCGACAAAGACATCGATGTCAACAAGTGC
ACGCCCAACACGCGCGTCGCTCTGCGCAACGACTCGTACGTCCTCCACAA
GATTTTGCCGACAAAGGTGGACCCGCTGGTGAGCCTGATGAAGGTGGAGA
AGGTGCCAGACTCAACCTACGACATGATCGGTGGGCTGGAAAAGCAGATC
AGGGAGATCAAGGAAGTAATCGAGCTACCAATCAAGCATCCGGAGCTGTT
CGAGTCGCTGGGCGTCGCTCAGCCCAAGGGCGTCCTCTTGTATGGACCCC
CTGGGACGGGGAAGACGCTTCTGGCACGGGCCGTGGCACATCACACCGAC
TGCACCTTCATCCGCGTGTCGGGGTCGGAGCTGGTGCAGAAGTACATTGG
AGAG
back to top