mRNA_Ecto-sp13_S_contig98.21453.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig98.21453.1
Unique NamemRNA_Ecto-sp13_S_contig98.21453.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig98.21453.1 vs. uniprot
Match: A0A6H5K487_9PHAE (SPDS protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K487_9PHAE)

HSP 1 Score: 590 bits (1520), Expect = 1.040e-212
Identity = 288/293 (98.29%), Postives = 293/293 (100.00%), Query Frame = 1
Query:   46 MSIKDGWFSETEVLWPGQKFSLEVKEVLFHERSDFQDVLVFDSVHYGKVLVLDGVIQLTERDECSYQEMLTHIPCFAQGDPKKVLIVGGGDGGVLREVARHPGVETIHMCEIDSMVCEVSKRFEFCTASAFGDSRLKLVHEDAAEFVKKEGNSGYDVIIVDSSDPVGPAETLFQPSFYQNMKQALAPMGVIATQGECLWLHLPLITTVLRACAEMFGSVDYAFTTVPSYPSGQIGFVLASVEERDLSTPASTPNAAMTEVLRYYSPEVHQAAFVLPVFAEKEIAGVRRRSSKE 924
            MSIKDGWFSETEVLWPGQKFSLEVKEVLFHERSDFQDVLVFDSVHYGKVLVLDGVIQLTERDECSYQEMLTHIPCFAQGDPKKVLIVGGGDGGVLREVARHPGVETIHMCEIDS+VCEVS+RFEFCTASAFGD+RLKLVHEDAAEFVKKEGNSGYDVIIVDSSDPVGPAETLFQPSFYQNMKQALAPMGVIATQGECLWLHLPLITTVLRACAE+FGSVDYAFTTVPSYPSGQIGFVLASVEERDLSTPASTPNAAMTEVLRYYSPEVH+AAFVLPVFAEKEIAGVRRRSSKE
Sbjct:    1 MSIKDGWFSETEVLWPGQKFSLEVKEVLFHERSDFQDVLVFDSVHYGKVLVLDGVIQLTERDECSYQEMLTHIPCFAQGDPKKVLIVGGGDGGVLREVARHPGVETIHMCEIDSVVCEVSRRFEFCTASAFGDARLKLVHEDAAEFVKKEGNSGYDVIIVDSSDPVGPAETLFQPSFYQNMKQALAPMGVIATQGECLWLHLPLITTVLRACAEIFGSVDYAFTTVPSYPSGQIGFVLASVEERDLSTPASTPNAAMTEVLRYYSPEVHRAAFVLPVFAEKEIAGVRRRSSKE 293          
BLAST of mRNA_Ecto-sp13_S_contig98.21453.1 vs. uniprot
Match: A0A835ZDK7_9STRA (Spermidine/spermine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDK7_9STRA)

HSP 1 Score: 452 bits (1163), Expect = 2.350e-158
Identity = 215/291 (73.88%), Postives = 250/291 (85.91%), Query Frame = 1
Query:   46 MSIKDGWFSETEVLWPGQKFSLEVKEVLFHERSDFQDVLVFDSVHYGKVLVLDGVIQLTERDECSYQEMLTHIPCFAQGDPKKVLIVGGGDGGVLREVARHPGVETIHMCEIDSMVCEVSKRFEFCTASAFGDSRLKLVHEDAAEFVKKEGNSGYDVIIVDSSDPVGPAETLFQPSFYQNMKQALAPMGVIATQGECLWLHLPLITTVLRACAEMFGSVDYAFTTVPSYPSGQIGFVLASVEERDLSTPASTPNAAMTEVLRYYSPEVHQAAFVLPVFAEKEIAGVRRRSS 918
            MSI +GWFSE E +WPGQKFSL+V++VLFHE+SDFQDVLVF S  YGKVLVLDGVIQ+TERDE +YQEMLTHIPCFA   PK+VLIVGGGDGG+LREVARH  VE I MCEID MVC+VSK+FEF TA+AFGD RL+LVHEDAAEFVK+EGN  YDVIIVDSSDPVGPAETLF+P F+ +MK AL+P G++ATQGECLWLHL LI  VL +CA  F S++YAFTT+P+YPSGQIGFV+ S  ERDLSTPA  P+AAM + LRYYSP VH++AFVLP FAE+E++ VR+R S
Sbjct:    1 MSITNGWFSEVEAMWPGQKFSLQVEKVLFHEKSDFQDVLVFQSATYGKVLVLDGVIQVTERDEFAYQEMLTHIPCFAHPHPKRVLIVGGGDGGILREVARHACVENIDMCEIDPMVCDVSKKFEFSTATAFGDPRLRLVHEDAAEFVKREGNGQYDVIIVDSSDPVGPAETLFKPEFFLSMKNALSPGGIVATQGECLWLHLKLIRGVLESCASTFTSLEYAFTTMPTYPSGQIGFVVGSTAERDLSTPAREPDAAMAQDLRYYSPAVHRSAFVLPAFAEREVSAVRKRFS 291          
BLAST of mRNA_Ecto-sp13_S_contig98.21453.1 vs. uniprot
Match: H3GAD3_PHYRM (PABS domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=H3GAD3_PHYRM)

HSP 1 Score: 373 bits (958), Expect = 3.580e-127
Identity = 174/291 (59.79%), Postives = 232/291 (79.73%), Query Frame = 1
Query:   46 MSIKDGWFSETEVLWPGQKFSLEVKEVLFHERSDFQDVLVFDSVHYGKVLVLDGVIQLTERDECSYQEMLTHIPCFAQGDPKKVLIVGGGDGGVLREVARHPGVETIHMCEIDSMVCEVSKRF-EFCTASAFGDSRLKLVHEDAAEFVKKEGNSGYDVIIVDSSDPVGPAETLFQPSFYQNMKQALAPMGVIATQGECLWLHLPLITTVLRACAEMFGSVDYAFTTVPSYPSGQIGFVLASVEERD--LSTPASTPNAAMTEVLRYYSPEVHQAAFVLPVFAEKEIAGVRR 909
            MS +  WFSETE +WPGQKFSL+++EVLF  +SDFQDVLVF S  YG VLVLDGVIQLTERDE +YQEM+TH+P FA   PK+VLIVGGGDGGVLREV +H  V+ + MCEID+MVC+VSK+F +   A+AF D R+ L+H DAA ++++  +  +DV+IVDSSDPVGPAE L++  FY+NMK +L+P GVI TQGECLWLHL LI  V++ C  +F +V+Y++TT+P+YPSGQIGF++ S+++ +  L+ P  TP+A M + LRYY+P++H+A+FVLP FAE++I  VR+
Sbjct:    1 MSTEKQWFSETEAMWPGQKFSLQMEEVLFQGKSDFQDVLVFKSATYGNVLVLDGVIQLTERDEFAYQEMITHLPMFAHKQPKRVLIVGGGDGGVLREVTKHDCVQEVVMCEIDAMVCDVSKQFFKDTVATAFDDPRVTLLHADAAVYLRENTSDKFDVVIVDSSDPVGPAEVLYRAEFYENMKNSLSPDGVICTQGECLWLHLDLIVEVMQRCQNLFPTVNYSYTTIPTYPSGQIGFIMCSLDDSEGVLAKPKRTPDAKMEQTLRYYNPKIHEASFVLPSFAERKIVAVRK 291          
BLAST of mRNA_Ecto-sp13_S_contig98.21453.1 vs. uniprot
Match: A0A3M6VRP9_9STRA (PABS domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VRP9_9STRA)

HSP 1 Score: 370 bits (950), Expect = 6.770e-126
Identity = 172/285 (60.35%), Postives = 227/285 (79.65%), Query Frame = 1
Query:   64 WFSETEVLWPGQKFSLEVKEVLFHERSDFQDVLVFDSVHYGKVLVLDGVIQLTERDECSYQEMLTHIPCFAQGDPKKVLIVGGGDGGVLREVARHPGVETIHMCEIDSMVCEVSKRF-EFCTASAFGDSRLKLVHEDAAEFVKKEGNSGYDVIIVDSSDPVGPAETLFQPSFYQNMKQALAPMGVIATQGECLWLHLPLITTVLRACAEMFGSVDYAFTTVPSYPSGQIGFVLASVEERD--LSTPASTPNAAMTEVLRYYSPEVHQAAFVLPVFAEKEIAGVRR 909
            WFSETE +WPGQKFS+E+++VLF  +SDFQDVLVF S  YG VLVLDGVIQLTERDE +YQEM+TH+P FA   PK+VLIVGGGDGGVLREV +H  V+ + MCEIDSMVC+VSK+F +   A+AF D R+ L+H DAA ++++  N  +DV+IVDSSDPVGPAE L++  FY+NMK++L+P G+I TQGECLWLHL LI  V+  C  +F SV+Y++TT+P+YPSGQIGF++ S+++ +  L  P   P+A M + LRYY+P++H+A+FVLP FAE++I  VR+
Sbjct:   11 WFSETEAMWPGQKFSIEIEQVLFKGKSDFQDVLVFKSATYGNVLVLDGVIQLTERDEFAYQEMITHLPMFAHKQPKRVLIVGGGDGGVLREVTKHDCVQEVVMCEIDSMVCDVSKKFFKDTVATAFDDPRVTLLHADAAVYLRENRNDKFDVVIVDSSDPVGPAEVLYRAEFYENMKKSLSPDGIICTQGECLWLHLDLIVDVMTRCQNLFSSVNYSYTTIPTYPSGQIGFIMCSLDDSEGVLIKPKRLPDAKMEQTLRYYNPKIHEASFVLPNFAERKITTVRK 295          
BLAST of mRNA_Ecto-sp13_S_contig98.21453.1 vs. uniprot
Match: A0A225VS69_9STRA (Spermidine synthase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VS69_9STRA)

HSP 1 Score: 369 bits (947), Expect = 1.680e-125
Identity = 174/291 (59.79%), Postives = 231/291 (79.38%), Query Frame = 1
Query:   46 MSIKDGWFSETEVLWPGQKFSLEVKEVLFHERSDFQDVLVFDSVHYGKVLVLDGVIQLTERDECSYQEMLTHIPCFAQGDPKKVLIVGGGDGGVLREVARHPGVETIHMCEIDSMVCEVSKRFEFCT-ASAFGDSRLKLVHEDAAEFVKKEGNSGYDVIIVDSSDPVGPAETLFQPSFYQNMKQALAPMGVIATQGECLWLHLPLITTVLRACAEMFGSVDYAFTTVPSYPSGQIGFVLASVEERD--LSTPASTPNAAMTEVLRYYSPEVHQAAFVLPVFAEKEIAGVRR 909
            M+ +  WFSETE +WPGQKFSLE++EVLF  +SDFQDVLVF S  YG VLVLDGVIQ+TERDE +YQEM+ H+P FA   PK+VL+VGGGDGGV+RE+ +H  VE I  CEIDSMVC+VSKRF   T A+AF D R+KL+H DAA ++++  +  +DV+IVDSSDPVGPAE L++  FY++MK++L+P GVIATQGECLWLHL LI  V++ C  +F +VDY++TT+P+YPSGQIGF++ S+ + +  L+ P  +P+A M + LRYYS ++H+A+FVLP FAE++IA  R+
Sbjct:    1 MATEKQWFSETEAMWPGQKFSLEIEEVLFQGKSDFQDVLVFKSATYGNVLVLDGVIQVTERDEFAYQEMIAHLPLFAHKQPKRVLVVGGGDGGVVREIVKHECVEEIVWCEIDSMVCDVSKRFFKDTLATAFDDPRVKLLHADAAIYLRENTSDKFDVVIVDSSDPVGPAEVLYRAEFYESMKKSLSPDGVIATQGECLWLHLDLIVDVMQRCQNLFPTVDYSYTTIPTYPSGQIGFIMCSLNKSEGGLAKPKRSPDAKMEQTLRYYSSKIHEASFVLPSFAERKIATARK 291          
BLAST of mRNA_Ecto-sp13_S_contig98.21453.1 vs. uniprot
Match: A0A6V1NMD1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NMD1_HETAK)

HSP 1 Score: 369 bits (947), Expect = 7.410e-125
Identity = 182/293 (62.12%), Postives = 225/293 (76.79%), Query Frame = 1
Query:   52 IKDGWFSETEVLWPGQKFSLEVKEVLFHERSDFQDVLVFDSVHYGKVLVLDGVIQLTERDECSYQEMLTHIPCFAQGDPKKVLIVGGGDGGVLREVARHPGVETIHMCEIDSMVCEVSKR-FEFCTASAFGDSRLKLVHEDAAEFVKKEGNSGYDVIIVDSSDPVGPAETLFQPSFYQNMKQALAPMGVIATQGECLWLHLPLITTVLRACAEMFGSVDYAFTTVPSYPSGQIGFVLASVEERD--LSTPASTPNAAMTEVLRYYSPEVHQAAFVLPVFAEKEIAGVRRRSSK 921
            +K+GWFSE+EV+WPGQKFSL+V+EV+FH++SD+QDVLVF S  YG VLVLDGVIQLTERDE +YQEM+TH+P FA  +PKKVLI+GGGDGGVLREV +HP VE I MCEID +V + +K  F   TA+A+ D RL LV  DAAE++++EG+  YDVI+ DSSDPVGPAE+LFQP+FY+ M  AL P G+  TQGEC WLHL LI  V+ ACA +F  V+Y +TT+P+YPSGQIGFVL S   +D  L++P   P A M   LRYY P VH+AAFVLP FA    A V+R  +K
Sbjct:   24 VKNGWFSESEVMWPGQKFSLQVEEVVFHQKSDYQDVLVFKSSTYGMVLVLDGVIQLTERDEFAYQEMITHLPMFAHPNPKKVLIIGGGDGGVLREVVKHPTVEKIDMCEIDDVVIQCAKDYFGESTATAYADPRLNLVQGDAAEYIRREGHERYDVIVCDSSDPVGPAESLFQPAFYEAMANALEPGGITCTQGECQWLHLELIEKVVAACASLFNQVEYGYTTIPTYPSGQIGFVLCSNNPQDGALTSPRRAPPAGMA--LRYYRPAVHRAAFVLPAFAH---AAVQRARAK 311          
BLAST of mRNA_Ecto-sp13_S_contig98.21453.1 vs. uniprot
Match: A0A662X3P4_9STRA (PABS domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X3P4_9STRA)

HSP 1 Score: 366 bits (940), Expect = 1.950e-124
Identity = 173/291 (59.45%), Postives = 227/291 (78.01%), Query Frame = 1
Query:   46 MSIKDGWFSETEVLWPGQKFSLEVKEVLFHERSDFQDVLVFDSVHYGKVLVLDGVIQLTERDECSYQEMLTHIPCFAQGDPKKVLIVGGGDGGVLREVARHPGVETIHMCEIDSMVCEVSKR-FEFCTASAFGDSRLKLVHEDAAEFVKKEGNSGYDVIIVDSSDPVGPAETLFQPSFYQNMKQALAPMGVIATQGECLWLHLPLITTVLRACAEMFGSVDYAFTTVPSYPSGQIGFVLASVEERD--LSTPASTPNAAMTEVLRYYSPEVHQAAFVLPVFAEKEIAGVRR 909
            M+ +  WFSETE +WPGQKFSLE++ VLF  +S+FQDVLVF S  YG VLVLDGVIQLTERDE +YQEM+ H+P FA   PK+VLIVGGGDGGVLREV +H  VE + MCEID MVC+VSK+ F    A+AF D RL L+H DAA ++++     +DV+IVDSSDPVGPAE L++  FYQ+MK +LAP G++ TQGECLWLHL LI  V+  C  +F +++Y++TT+P+YPSGQIGF++ S++E +  L+TP  TP+A M + LRYY+ ++H+A+FVLP FAE++IA VR+
Sbjct:    1 MAAEKQWFSETEAMWPGQKFSLEMETVLFQGKSNFQDVLVFKSATYGHVLVLDGVIQLTERDEFAYQEMIAHLPLFAHAQPKRVLIVGGGDGGVLREVTKHACVEKVVMCEIDPMVCDVSKKYFGETMATAFEDPRLTLIHADAAVYLRENTEEKFDVMIVDSSDPVGPAEVLYRAEFYQSMKDSLAPNGIVCTQGECLWLHLDLIVDVMSRCQSIFPTINYSYTTIPTYPSGQIGFIMCSLDESEGALATPKRTPDAKMEQTLRYYNAKIHEASFVLPNFAERKIATVRK 291          
BLAST of mRNA_Ecto-sp13_S_contig98.21453.1 vs. uniprot
Match: D0NH98_PHYIT (Spermidine synthase, putative n=12 Tax=Phytophthora TaxID=4783 RepID=D0NH98_PHYIT)

HSP 1 Score: 366 bits (939), Expect = 3.180e-124
Identity = 173/292 (59.25%), Postives = 229/292 (78.42%), Query Frame = 1
Query:   43 TMSIKDGWFSETEVLWPGQKFSLEVKEVLFHERSDFQDVLVFDSVHYGKVLVLDGVIQLTERDECSYQEMLTHIPCFAQGDPKKVLIVGGGDGGVLREVARHPGVETIHMCEIDSMVCEVSKR-FEFCTASAFGDSRLKLVHEDAAEFVKKEGNSGYDVIIVDSSDPVGPAETLFQPSFYQNMKQALAPMGVIATQGECLWLHLPLITTVLRACAEMFGSVDYAFTTVPSYPSGQIGFVLASVEERD--LSTPASTPNAAMTEVLRYYSPEVHQAAFVLPVFAEKEIAGVRR 909
            T + +  WFSETE +WPGQK SLEV+E LF  +SDFQDVLVF S  YG VLVLDGVIQLTERDE +YQEM++H+P F+   PK+VL+VGGGDGGVLREV +H  VE I MCEIDSMVC VSK+ F+   A+AF D R+KL+H DAA ++++     +DV+IVDSSDPVGPAE L++  FY++MK +L+P G+I TQGECLWLHL LI  V++ C  +F +V+Y++TT+P+YPSGQIGF++ S+++ +  L+ P  TP+A M E LRYY+ ++H+A+FVLP FAE++IA VR+
Sbjct:    4 TTTNEKQWFSETEAMWPGQKLSLEVEEELFRGKSDFQDVLVFKSATYGHVLVLDGVIQLTERDEFAYQEMISHLPMFSHKQPKRVLVVGGGDGGVLREVTKHDCVEEIVMCEIDSMVCNVSKKYFKDTVATAFDDPRVKLLHADAAVYLRENTTEKFDVVIVDSSDPVGPAEVLYRAEFYESMKNSLSPDGIICTQGECLWLHLDLIVDVMQRCQNLFPTVNYSYTTIPTYPSGQIGFIMCSLDKSEGVLAKPKRTPDAKMEETLRYYTSQIHEASFVLPSFAERKIATVRK 295          
BLAST of mRNA_Ecto-sp13_S_contig98.21453.1 vs. uniprot
Match: A0A0P1ACQ1_PLAHL (Spermidine synthase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACQ1_PLAHL)

HSP 1 Score: 365 bits (938), Expect = 4.060e-124
Identity = 176/283 (62.19%), Postives = 225/283 (79.51%), Query Frame = 1
Query:   64 WFSETEVLWPGQKFSLEVKEVLFHERSDFQDVLVFDSVHYGKVLVLDGVIQLTERDECSYQEMLTHIPCFAQGDPKKVLIVGGGDGGVLREVARHPGVETIHMCEIDSMVCEVSKRFEFCT-ASAFGDSRLKLVHEDAAEFVKKEGNSGYDVIIVDSSDPVGPAETLFQPSFYQNMKQALAPMGVIATQGECLWLHLPLITTVLRACAEMFGSVDYAFTTVPSYPSGQIGFVLASVEERDLSTPASTPNAAMTEVLRYYSPEVHQAAFVLPVFAEKEIAGVRR 909
            WFSETE +WPGQKF+L+V++VLF  +SDFQDVLVF S  YG VLVLDGVIQLTERDE +YQEM+TH+P FA   PK+VLIVGGGDGGVLREV +H  VE I MCEIDSMVC+VSK+F   T A+AF D R+ L+H DAA ++ +   + +DV+IVDSSDPVGPAE L++  FYQ+MK AL+P GVI TQGECLWLHL LI  V++ C  +F +V+YA++T+P+YPSGQIGF++ S   + +  P  TP+A M++ LRYYS ++H+A+FVLP FAE++IA VR+
Sbjct:   11 WFSETEAMWPGQKFALQVEKVLFQGKSDFQDVLVFKSTTYGNVLVLDGVIQLTERDEFAYQEMITHLPMFAHKQPKRVLIVGGGDGGVLREVIKHDCVEEIIMCEIDSMVCDVSKKFFTETVATAFNDPRVTLLHADAALYLHENTTNKFDVVIVDSSDPVGPAEVLYKAEFYQSMKNALSPDGVICTQGECLWLHLDLIVDVMQRCQSLFSTVNYAYSTIPTYPSGQIGFIMCS-SGQSVDKPKRTPDAKMSKTLRYYSAKIHEASFVLPGFAEQKIATVRK 292          
BLAST of mRNA_Ecto-sp13_S_contig98.21453.1 vs. uniprot
Match: K3WTM8_GLOUD (PABS domain-containing protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WTM8_GLOUD)

HSP 1 Score: 365 bits (938), Expect = 5.170e-124
Identity = 179/285 (62.81%), Postives = 215/285 (75.44%), Query Frame = 1
Query:   64 WFSETEVLWPGQKFSLEVKEVLFHERSDFQDVLVFDSVHYGKVLVLDGVIQLTERDECSYQEMLTHIPCFAQGDPKKVLIVGGGDGGVLREVARHPGVETIHMCEIDSMVCEVSKRFEFCT-ASAFGDSRLKLVHEDAAEFVKKEGNSGYDVIIVDSSDPVGPAETLFQPSFYQNMKQALAPMGVIATQGECLWLHLPLITTVLRACAEMFGSVDYAFTTVPSYPSGQIGFVLASVEERD--LSTPASTPNAAMTEVLRYYSPEVHQAAFVLPVFAEKEIAGVRR 909
            WFSETE LWPGQKF LE++EVLF  +SDFQDVLVF S  YG VLVLDGVIQ TERDE SYQEM+TH+P FA   PK VLIVGGGDGGVLREV +H  VE I  CEID MVCEVSK+F   T A++F D R  L+H DAA +++      +DVIIVDSSDPVGPAE LF+  FY+NMK++LAP G++ TQGECLWLHL LI  VL  C   F ++ YAFTT+P+YPSGQIGF++ S++E    L  P   P A + E LRYY+ +VH+AAFVLP FAE++I+ VR+
Sbjct:   11 WFSETEALWPGQKFCLEMEEVLFQGKSDFQDVLVFKSATYGNVLVLDGVIQCTERDEFSYQEMITHLPMFAHAQPKNVLIVGGGDGGVLREVVKHDSVEKIVFCEIDPMVCEVSKKFFKNTLATSFDDPRCTLIHADAAAYLRNNTTEKFDVIIVDSSDPVGPAEVLFRAEFYENMKKSLAPGGIVCTQGECLWLHLDLIVEVLGRCQNYFPTIQYAFTTIPTYPSGQIGFIVCSLDESKDALVKPKRAPTAEVQETLRYYNSKVHEAAFVLPQFAERKISTVRK 295          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig98.21453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K487_9PHAE1.040e-21298.29SPDS protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A835ZDK7_9STRA2.350e-15873.88Spermidine/spermine synthase n=1 Tax=Tribonema min... [more]
H3GAD3_PHYRM3.580e-12759.79PABS domain-containing protein n=10 Tax=Phytophtho... [more]
A0A3M6VRP9_9STRA6.770e-12660.35PABS domain-containing protein n=1 Tax=Peronospora... [more]
A0A225VS69_9STRA1.680e-12559.79Spermidine synthase n=1 Tax=Phytophthora megakarya... [more]
A0A6V1NMD1_HETAK7.410e-12562.12Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A662X3P4_9STRA1.950e-12459.45PABS domain-containing protein n=2 Tax=Nothophytop... [more]
D0NH98_PHYIT3.180e-12459.25Spermidine synthase, putative n=12 Tax=Phytophthor... [more]
A0A0P1ACQ1_PLAHL4.060e-12462.19Spermidine synthase n=1 Tax=Plasmopara halstedii T... [more]
K3WTM8_GLOUD5.170e-12462.81PABS domain-containing protein n=2 Tax=Pythiaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig98contigEcto-sp13_S_contig98:15670..21149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score591.3
Seed ortholog evalue2.7e-166
Seed eggNOG ortholog2880.D7FKW3
Preferred nameSRM
Model size927
KEGG rclassRC00003,RC00021,RC00053,RC00060,RC00215,RC00225
KEGG koko:K00293,ko:K00797,ko:K00802,ko:K05353
KEGG ReactionR01153,R01920,R02315,R02869,R08359
KEGG Pathwayko00270,ko00300,ko00310,ko00330,ko00410,ko00480,ko00960,ko01100,ko01110,ko01130,ko01230,map00270,map00300,map00310,map00330,map00410,map00480,map00960,map01100,map01110,map01130,map01230
KEGG ModuleM00030,M00032,M00034,M00133
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004766,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006575,GO:0006576,GO:0006595,GO:0006596,GO:0006597,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008215,GO:0008216,GO:0008295,GO:0009058,GO:0009108,GO:0009110,GO:0009308,GO:0009309,GO:0009653,GO:0009987,GO:0010033,GO:0015939,GO:0015940,GO:0016020,GO:0016053,GO:0016740,GO:0016765,GO:0016768,GO:0017144,GO:0019752,GO:0030587,GO:0031150,GO:0031154,GO:0031288,GO:0032502,GO:0032787,GO:0034097,GO:0034641,GO:0036360,GO:0042221,GO:0042364,GO:0042398,GO:0042401,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046983,GO:0048856,GO:0050896,GO:0051186,GO:0051188,GO:0051703,GO:0051704,GO:0051716,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071944,GO:0072330,GO:0090702,GO:0097164,GO:0099120,GO:1901564,GO:1901566,GO:1901576,GO:1990823,GO:1990830
Exons7
EggNOG free text desc.spermidine synthase activity
EggNOG OGsCOG0421@1,KOG1562@2759
Ec32 ortholog descriptionspermidine/spermine synthase
Ec32 orthologEc-17_001590.1
EC1.5.1.10,2.1.1.53,2.5.1.16,2.5.1.22
Cds size927
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig98.21453.1prot_Ecto-sp13_S_contig98.21453.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig98 15670..21149 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464243.9368436-CDS-Ecto-sp13_S_contig98:15669..158181681464243.9368436-CDS-Ecto-sp13_S_contig98:15669..15818Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98 15670..15818 -
1681464243.951274-CDS-Ecto-sp13_S_contig98:15951..161471681464243.951274-CDS-Ecto-sp13_S_contig98:15951..16147Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98 15952..16147 -
1681464243.9662657-CDS-Ecto-sp13_S_contig98:16624..167111681464243.9662657-CDS-Ecto-sp13_S_contig98:16624..16711Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98 16625..16711 -
1681464243.9881167-CDS-Ecto-sp13_S_contig98:17027..171231681464243.9881167-CDS-Ecto-sp13_S_contig98:17027..17123Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98 17028..17123 -
1681464244.0017529-CDS-Ecto-sp13_S_contig98:17411..175161681464244.0017529-CDS-Ecto-sp13_S_contig98:17411..17516Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98 17412..17516 -
1681464244.0113626-CDS-Ecto-sp13_S_contig98:19049..192291681464244.0113626-CDS-Ecto-sp13_S_contig98:19049..19229Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98 19050..19229 -
1681464244.0217304-CDS-Ecto-sp13_S_contig98:21035..211491681464244.0217304-CDS-Ecto-sp13_S_contig98:21035..21149Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98 21036..21149 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig98.21453.1

>prot_Ecto-sp13_S_contig98.21453.1 ID=prot_Ecto-sp13_S_contig98.21453.1|Name=mRNA_Ecto-sp13_S_contig98.21453.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=309bp
FHHYRAAPYSYPAQTMSIKDGWFSETEVLWPGQKFSLEVKEVLFHERSDF
QDVLVFDSVHYGKVLVLDGVIQLTERDECSYQEMLTHIPCFAQGDPKKVL
IVGGGDGGVLREVARHPGVETIHMCEIDSMVCEVSKRFEFCTASAFGDSR
LKLVHEDAAEFVKKEGNSGYDVIIVDSSDPVGPAETLFQPSFYQNMKQAL
APMGVIATQGECLWLHLPLITTVLRACAEMFGSVDYAFTTVPSYPSGQIG
FVLASVEERDLSTPASTPNAAMTEVLRYYSPEVHQAAFVLPVFAEKEIAG
VRRRSSKE*
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mRNA from alignment at Ecto-sp13_S_contig98:15670..21149-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig98.21453.1 ID=mRNA_Ecto-sp13_S_contig98.21453.1|Name=mRNA_Ecto-sp13_S_contig98.21453.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5480bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98:15670..21149- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTCACCACTACCGAGCTGCTCCCTATTCATACCCGGCACAGACCATGAG TATCAAGGATGGATGGTTCTCTGAGACGGAGGTACTGTGGCCCGGGCAAA AATTTTCTCTAGAGGTGAGAGAGGCTGCACGTGTGTGTTTTTGACCGGCG CTATTCATAAATTAGACGAAAGCAGTCCATTATAGCCTATAAGCACATCT CATAACGGGCGAGAGGGTACACGCCCCGACACTCGCTTCATCGCAGCGTG TGTAGCTCCAGAGTGCTGTGGTATGTTGAGTTCACTCCCGGGCTTTCTTC CTTGACGCTCGTTTCAACAAATGATGCATTCGTGCGTACCACTCCGGATC GACCGCATTTCACGAGAATGACTTGTTCATGGTAGCTGGCCATCTTGCTC TTTTTACAGTCACCTCCAGACGCCAATACCGCACCAGCTTGGTGTCTGCG TTTGGTGTTACTTACGGAAGATTGTTTTGCAATGCATCCTGACGATGACT CCACCCCTCGTCTATTAACGTCTCAAGCAATCCTCTTGTTGTACGGCAAA GCGCCACCCCTAGTACAATATTTTGCGCAAGGCTTGTGGCTTCCGGCCGC ACCAATACCGAGCGGTACGAAGTATTTGTATTGCAAGTTCTTAGGGTAGC CAGGTACCATGAATACGCTACTTCGACAACGATTCCCCGTGTTGGATAAC CATCTTGTCTTCTGATGTAGATGGTGTTCCATTGACAGTACTGGAGAGAA TGGATTTTATATCGCCCAGTTTTGAAAACAAACGCAAGAGCACTCCAAGC AAATAGAAAATGGACAAACGAGACCAGGAAGGCATAGCGAAAAACAATAA TCGTTGATTCTCGCACAGGGCGGCAGTAAAGGCGGTTAAAACTCAAAACA TACATTTCACGCGTCTACCGCCAGAGGCCCCCTTTGAAATCAAGATAAAA ATGTACACGAGCCTAAATTCAAGTCAACGGAGCCAAACGGAAGGCTCCCA ACAACGGTTGTTTGGAGGGTTAGCTACTTCTGACAACCCGCGGTGCAGGG GTTTACGGTCAGTGGCGGCTAGGGCGGCTGTGACAAATGTTGGATTCCGC TTGGTTCCGGCGCAGATTTCGGACTGTTTTCAGAGGCTGCTGCGACCTTC GATCTTTCAGCTCCAGTGCGGCAAACCTGAACGTGCGAGCACGCACGACG ACTTTTCATGGTGCCCCATACTGATGACGGTAGAAACCCAAAGCGAACCC TAACCCGAAGGATGTTTTCTAAATTATATTGGATGAAAGTATGAGAAAAG AGCCAGCGTCAAAATCCTTTTGTCTGGACCCCCAAAAGTGTTTTCCGTTG ATAAATGTTGTTTGTCAGTGCTGTCTATACCGCTCCCGTAGCCCCATTAC TTGTAGGACCCTTGCAGACGGCGGGACAGACAGCGTGCTTCAAACACATG GGCTTTCGCGGTAATTCTCGCGTAGAACTTAATGAACACCATGGAATTAC TATATCGAGTAAGCTTCAACCTACTTGGTCCACATGGTGTATGCTCTGTT CTTCCTCAAGCTGCACACGTTGGTGGATCGTACCCCCGTGTTTGGACGCC GTTCGTATCCAGGCCCCAGCAGTTTACATGCTGAGAACGTGTTCTCATGG TCTTCTTACATGTTGAAAAATTGAGCCCTGCCTGAATTTCATAACTACCA AGGTTTAAAGGTGGTTTGCAGAGCTATCTGCATAGCAGGAACGTGCACCG TAGTCGATTCAGGCAATCGAAGTATATTTGATGTTTTCAACCATTCGAAA GGGAACTCGAAAGACCGCGGCGACACCCTGGATAGGTTGAGATACTTTTG CGACTTCGCGAATAAATACCGCCCTCTCCCTTGGCGACAATGATGGCGGC CTCCTCGTTTTGCTTCACAGGTGAAGGAGGTGCTATTCCATGAGCGATCC GACTTTCAAGACGTGCTGGTGTTTGATTCAGTGCACTATGGTAAAGTGCT CGTCTTGGATGGGGTGATCCAGCTCACTGAACGAGACGAGTGCTCGTATC AAGAGATGCTCACCCATATTCCGTGCTTCGCGCAAGGCGACCCCAAGAAG GTATTACAATCGCTTATTGAGCAGTATCGAGCTTCAGTGTTCCTGCTCAT ACGCTACACTCCGTCGTCAAGGGCGACAAAAGACTCTGGAACTCGTTACT ACTGTCCTGATGGACCCACGGGGTCAGGACTAAGGGCTTTCCTCCTAGTG AAATGTAATGAAACCGAGCAACAGAAGAAACTGAGGCACTGTCTATTTGG CACATACAATCCTAGGAAACCAACATCAAACCCCTGATTTTGTTGACCCT ACGGTTGCCCTCAATTGATCTCTACTCGCTCATTACAGCTGCAGATCTGC GCGCGGTCCCAATCACATATTTTTGGTCGGTCCTATTGAGCGGCGCACTT GTGGGAATTAATCCATCATAACGAGAGGCCCCCGACATTCTCCAAACACG ACAGGGATAAGATTATCTGAAATGCATGCGACACCTGCGTTGCAGCCCAT GGAAAATGAAAAAATTATGCTGACAAAAATATACTGGGTACCTCCACAAT TAACCGGAACCCCTTTGAAATTTTGCTGCTCAGCCCACCCCAGGTCACCC TGTTAGCCACCACTGGTACTACTGGCACAGACCGCAGATCTAAATGAAAC TGGCAGACCAGTCCAACATAGTTCCAACCTACGTCCGCAAGCAGTTTTCA CGCCGTGATTTTGCGTTTAGCTCGAGATTTGCTTCATGCCGATCGGTTGC TGTTGCGAACGTCCTGTTTTTCAGCTCTCTTCGTGGCAAACTTCCGCAGG CCGTCGCGGTCCGAAAACGGGACTACGTCCTTCGTGACTTTGCCCCACGG CAAAAGGATAGCCACAGAACTCAATGCAAAAATCTAGAACTTTGGATCAG CATCATTTCGCCCTCCACGGGTGTGCAAAGGTCACCTAGAATCGACACCT AACTGCCTCTAAACACGAGTAGTTGGCAGCGGCGCAAGGAGCGCGTGAAA AGAAAACGGCCACGTCTCCATTTTGATGTCGTCACCGAGACTCTGGCCAG ACTTTGCAACGCTGTCGCGGTCCAGGAAGTACATGAAAATCACTCGCGTT AGGGGCCCGTGTAGTTTGGGCACTACAGATTGCAATGCCGTGATCTAGAA TTTTGGATTGGCACTACAGCTAGAGTTGTTCCAAAAAAAACACAAACCCT ACAGAAAAAAAGAGTACAGGGGGCACCGTGCTATCGTGTCTGTTGTCAGG AACAAGAAAAAAAGGCCCTTTTTCGCCCTTTTTTCCACGGGCTGCAACGC ACGTTGCAGAGGTTTGTTTGTAACGGTCTCCACCGTGGGCGATTGCAGTA CTTGATCTTCGAGGCTTTGGTTGACCGCCGCTGTGCAGCTAGCTGGCGCG TCACAGCTTCCCTCCTTCACGCTTTTCTCGCCCACCCCCACCCCTGCTAT ATTCGAACACAATGGATCCTATCATCCAGGAGGTTCCTAGTTGGTCCAAG AAAAGCAATCTCTGCTTGCTCGATTTCTCACGAAACACAACACGTATTCT GCCAATCCATCATTCTGTACATTTCACCGCCAGGTTCTCATCGTGGGAGG CGGGGACGGCGGTGTACTTCGGGAGGTAGCCCGCCACCCCGGAGTGGAAA CAATTCACATGTGCGAGATCGACTCCATGGTGTGTGAGGTGCGAACTGAT GAGTCCACGTGTTTTCGTCGATGACCCGTGCTGAAACATCCGTGGATGAA ATACTGGTATATCGCGCAGTCCGCCCGCGAGCGGGTTAGTAGGTACTTGG GACATGAGGGATTGAGTCTGTGTGTTACGGCACTATGAACTGGGCCTGGC AGGGTTAGGGGCACCGTTCTTAACCGCTGAGAAATGTGATGACGACCTTC ACCCTTAGCAGCAGTTGTGTCCTTGCTGTTGCTGTGCCACACCTGGGCCC GCTGTGACGTTTCGGTCTACATGAAGGTGTCCAAGCGTTTCGAATTTTGC ACGGCGTCTGCCTTCGGCGATTCGCGCCTCAAGCTTGTGCACGAAGATGC CGCAGAATTTGTCAAGAAAGAGGTGAGGTTCGAAGCACGAGTTGAACATC GAAAATGGGGTATCAGATTTCATTGACAGTGACGCCAACGAATTCCTGTA CCCGAGATATCTCGTCCTCTTCCAGGAGGGTCACCCTCAGATCGTTACTG TAGAGTGGTCTTGCAGTTGCATCAACACTGTATTCCAGCATGGTGTCGCC ACCAACCTTCGGCCGGCTGACGTCTCGGGCGGATATAGTTTACCATGCCT CTTCAGTGTAGTGTTCATTTTTGGGTACACCACGTGTGCAATACTCGAAA ACCCTTGCTCGAATTCCTCTTGTCCGTGCTTCCTACAGGGTAACAGCGGG TATGACGTTATCATCGTGGATTCATCCGACCCTGTCGGTCCTGCGGAAAC CCTCTTCCAACCGAGTTTTTACCAAGTGAGAATTGCTCGTGAGACGAGAC AAGTGATGACATGTCGTGTAAGCAAGACTCTGGAAAACGTGGCGTACGTG TACCAAGAGAAAATATCCGTGCACGCGAAGCACGAAAACAGCGAGCACCC GTTCTACTACTCCTTGTACCTGGCATTGGATGCTTGCCATGTACATGACG GCCCTTCTTGCCATGTAGTAGCCCACGACTTTTATCTAAACAGCAAAGTG CAGGAAACCTCTTGAACACGGCACAATCTTTGTTCGTCGACGGCATCAAA ACGGGGCTCTGCCGCGTATCTGGTAACACCGCGACTTCCACTGCCAGCGA TAACTTGCTCGAGGGTGTCGCTTGGAGATTTATATCCTCGTTCGTAGTGG CATACGCTTGAAATACAAGGCAGATATGTCACATTTGATCAGCCGTGCTC GTGTTGTGTGTTAACAAGCTATTCGCGTTCGACTACCCCTACCGCAATCT AGAACATGAAGCAGGCTCTGGCGCCCATGGGGGTCATCGCAACGCAAGGG GAATGCCTGTGGCTGCACCTGCCGCTGATCACCACCGTTTTACGTGCATG TGCTGAGATGTTTGGCTCTGTGGACTATGCTTTCACAACGGTGCCCTCGT ACCCATCTGGACAGATCGGATTCGTTCTTGCAAGTGTGGAAGAGCGAGGT GAGGGGTAGATATGTCGCAAGGACCTTGCTCGTGCTGGAGCCGCACATCT GGATTCGCATGCGTAGGTGCAACACCGAGCCCGCACGCGGTGGACAACAC AGAAATAACACGACCAACCTTTGTCTCGCAGATTTATCGACGCCGGCATC TACTCCCAATGCTGCGATGACGGAAGTGCTGAGATACTACAGCCCGGAGG TTCACCAGGCCGCCTTCGTTCTTCCCGTCTTCGCAGAAAAAGAAATAGCA GGCGTCAGACGGCGTTCTTCCAAAGAATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig98:15670..21149-

>mRNA_Ecto-sp13_S_contig98.21453.1 ID=mRNA_Ecto-sp13_S_contig98.21453.1|Name=mRNA_Ecto-sp13_S_contig98.21453.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=927bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98:15670..21149- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTCACCACTACCGAGCTGCTCCCTATTCATACCCGGCACAGACCATGAG
TATCAAGGATGGATGGTTCTCTGAGACGGAGGTACTGTGGCCCGGGCAAA
AATTTTCTCTAGAGGTGAAGGAGGTGCTATTCCATGAGCGATCCGACTTT
CAAGACGTGCTGGTGTTTGATTCAGTGCACTATGGTAAAGTGCTCGTCTT
GGATGGGGTGATCCAGCTCACTGAACGAGACGAGTGCTCGTATCAAGAGA
TGCTCACCCATATTCCGTGCTTCGCGCAAGGCGACCCCAAGAAGGTTCTC
ATCGTGGGAGGCGGGGACGGCGGTGTACTTCGGGAGGTAGCCCGCCACCC
CGGAGTGGAAACAATTCACATGTGCGAGATCGACTCCATGGTGTGTGAGG
TGTCCAAGCGTTTCGAATTTTGCACGGCGTCTGCCTTCGGCGATTCGCGC
CTCAAGCTTGTGCACGAAGATGCCGCAGAATTTGTCAAGAAAGAGGGTAA
CAGCGGGTATGACGTTATCATCGTGGATTCATCCGACCCTGTCGGTCCTG
CGGAAACCCTCTTCCAACCGAGTTTTTACCAAAACATGAAGCAGGCTCTG
GCGCCCATGGGGGTCATCGCAACGCAAGGGGAATGCCTGTGGCTGCACCT
GCCGCTGATCACCACCGTTTTACGTGCATGTGCTGAGATGTTTGGCTCTG
TGGACTATGCTTTCACAACGGTGCCCTCGTACCCATCTGGACAGATCGGA
TTCGTTCTTGCAAGTGTGGAAGAGCGAGATTTATCGACGCCGGCATCTAC
TCCCAATGCTGCGATGACGGAAGTGCTGAGATACTACAGCCCGGAGGTTC
ACCAGGCCGCCTTCGTTCTTCCCGTCTTCGCAGAAAAAGAAATAGCAGGC
GTCAGACGGCGTTCTTCCAAAGAATAA
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