mRNA_Ecto-sp13_S_contig98.21451.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig98.21451.1
Unique NamemRNA_Ecto-sp13_S_contig98.21451.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig98.21451.1 vs. uniprot
Match: D7FKW5_ECTSI (SAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKW5_ECTSI)

HSP 1 Score: 535 bits (1378), Expect = 8.510e-187
Identity = 313/353 (88.67%), Postives = 322/353 (91.22%), Query Frame = 1 
Query:    1 MESLGALTYRELQAFAKRHGVKANGSRVDLIQRLSDTHGGDDDTPVEDNTQPGSDERPDTDXXXXXXXXXXXXXXGTTLGVSGTDADNLVTLDRPHGACVQSQYDSDPDKSQQGKSDSQALVTDTPA--------DVAER-----VYATIKETRTTGETPQKTKVKLPVAGRFERAHQNLFASQASIERYGKTPKKSAPARENVPLSKTKASASKARVFAPTPVRPVVSGSAAKSSVKRGLTVASKPCTLVVQRSTKKPTQVKEFRLSSNQTGKREAFTFKPYTGPLRPIVPANNSSFSIGHALKKGSTPVGPKGIKATLASGEAQKARKAARVESSKAQRDKKLAEARFGRA 1020
            MESLG LTYRELQAFAKRHGVKANGSRVDLIQRLSDTHGGDDDTPVEDNTQPGSDERPDTDXXXXXXXXXXXXXXGTTLGV  TDADNL TLD+PHG CVQSQ+DSDPDKSQQGKSDSQ LVTDTPA        DVAER     V AT+KETRTTGETPQKTKVKLPVAGRFERAHQNLFASQASIERYGKTPKKSAPA+EN PLSKTKA AS A+VFAPTPVRPV SGSAAKSSVKRGLTVASKPCTLVVQRSTKKPTQVKEFRLSSNQTGKRE FTFKPYTGPLRPIVPANNSSF+IGHA KKGS PV  KGIKATLASG+AQKARK A VESSKAQRD+KLA+ARFGRA
Sbjct:    1 MESLGTLTYRELQAFAKRHGVKANGSRVDLIQRLSDTHGGDDDTPVEDNTQPGSDERPDTDXXXXXXXXXXXXXXGTTLGVPDTDADNLATLDKPHGTCVQSQHDSDPDKSQQGKSDSQVLVTDTPAEPEPCAGEDVAERRKSERVSATMKETRTTGETPQKTKVKLPVAGRFERAHQNLFASQASIERYGKTPKKSAPAKENAPLSKTKAFASTAKVFAPTPVRPVPSGSAAKSSVKRGLTVASKPCTLVVQRSTKKPTQVKEFRLSSNQTGKRETFTFKPYTGPLRPIVPANNSSFNIGHAPKKGSNPVRAKGIKATLASGKAQKARKEAHVESSKAQRDRKLADARFGRA 353
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BLAST of mRNA_Ecto-sp13_S_contig98.21451.1 vs. uniprot
Match: A0A6H5K5M9_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M9_9PHAE)

HSP 1 Score: 511 bits (1316), Expect = 2.130e-177
Identity = 306/352 (86.93%), Postives = 315/352 (89.49%), Query Frame = 1 
Query:    1 MESLGALTYRELQAFAKRHGVKANGSRVDLIQRLSDTHGGDDDTPVEDNTQPGSDERPDTDXXXXXXXXXXXXXXGTTLGVSGTDADNLVTLDRPHGACVQSQYDSDPDKSQQGKSDSQALVTDTPA--------DVAERV----YATIKETRTTGETPQKTKVKLPVAGRFERAHQNLFASQASIERYGKTPKKSAPARENVPLSKTKASASKARVFAPTPVRPVVSGSAAKSSVKRGLTVASKPCTLVVQRSTKKPTQVKEFRLSSNQTGKREAFTFKPYTGPLRPIVPANNSSFSIGHALKKGSTPVGPKGIKATLASGEAQKARKAARVESSKAQRDKKLAEARFGRA 1020
            MESLG+LTYRELQAFAKRHGVKANGSRVDLIQRL DTHGGDDDTPVEDNTQPGSD+RPDT XXXXXXXXXXXXXXGTTLGVS TDADNLVT DRPHGA VQSQ DSD DKSQQGKSDSQALVTDTPA        DVAER     YATIKETRTTG TPQKTKVKLPVAGRFERAHQ+LFASQASIERYGKTPKKSAPA+ NVPLSKTKASA KA+VFA TPVRPV SGS AKSSVKRGLTVAS PCTLVVQRSTKKPTQVKEFRLSSNQTGKRE FTFKPYTGPLRPIV ANN SF+IGHA KKGS PV PKGIKATLASG+ QKAR+ A VESSKAQRD+KLAEAR GRA
Sbjct:    1 MESLGSLTYRELQAFAKRHGVKANGSRVDLIQRLCDTHGGDDDTPVEDNTQPGSDDRPDTXXXXXXXXXXXXXXXGTTLGVSDTDADNLVTRDRPHGAFVQSQNDSDLDKSQQGKSDSQALVTDTPAEPQPRAVGDVAERCKSGNYATIKETRTTGGTPQKTKVKLPVAGRFERAHQSLFASQASIERYGKTPKKSAPAKGNVPLSKTKASAPKAKVFASTPVRPVDSGSGAKSSVKRGLTVASMPCTLVVQRSTKKPTQVKEFRLSSNQTGKRETFTFKPYTGPLRPIVSANNYSFNIGHAPKKGSNPVRPKGIKATLASGKGQKARREAHVESSKAQRDRKLAEARCGRA 352
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig98.21451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKW5_ECTSI8.510e-18788.67SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K5M9_9PHAE2.130e-17786.93SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig98contigEcto-sp13_S_contig98:5729..9249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1529
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionSAP domain
Ec32 orthologEc-17_001610.1
Cds size1023
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig98.21451.1prot_Ecto-sp13_S_contig98.21451.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig98 6235..9249 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464243.710354-UTR-Ecto-sp13_S_contig98:5728..62341681464243.710354-UTR-Ecto-sp13_S_contig98:5728..6234Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig98 5729..6234 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464243.7202697-CDS-Ecto-sp13_S_contig98:6234..64191681464243.7202697-CDS-Ecto-sp13_S_contig98:6234..6419Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98 6235..6419 -
1681464243.7352102-CDS-Ecto-sp13_S_contig98:6711..68051681464243.7352102-CDS-Ecto-sp13_S_contig98:6711..6805Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98 6712..6805 -
1681464243.7508485-CDS-Ecto-sp13_S_contig98:7107..72981681464243.7508485-CDS-Ecto-sp13_S_contig98:7107..7298Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98 7108..7298 -
1681464243.7650251-CDS-Ecto-sp13_S_contig98:7442..75811681464243.7650251-CDS-Ecto-sp13_S_contig98:7442..7581Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98 7443..7581 -
1681464243.783509-CDS-Ecto-sp13_S_contig98:8614..89261681464243.783509-CDS-Ecto-sp13_S_contig98:8614..8926Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98 8615..8926 -
1681464243.7996223-CDS-Ecto-sp13_S_contig98:9147..92491681464243.7996223-CDS-Ecto-sp13_S_contig98:9147..9249Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98 9148..9249 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig98.21451.1

>prot_Ecto-sp13_S_contig98.21451.1 ID=prot_Ecto-sp13_S_contig98.21451.1|Name=mRNA_Ecto-sp13_S_contig98.21451.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=341bp
MESLGALTYRELQAFAKRHGVKANGSRVDLIQRLSDTHGGDDDTPVEDNT
QPGSDERPDTDNDKPVENITQPGSDGTTLGVSGTDADNLVTLDRPHGACV
QSQYDSDPDKSQQGKSDSQALVTDTPADVAERVYATIKETRTTGETPQKT
KVKLPVAGRFERAHQNLFASQASIERYGKTPKKSAPARENVPLSKTKASA
SKARVFAPTPVRPVVSGSAAKSSVKRGLTVASKPCTLVVQRSTKKPTQVK
EFRLSSNQTGKREAFTFKPYTGPLRPIVPANNSSFSIGHALKKGSTPVGP
KGIKATLASGEAQKARKAARVESSKAQRDKKLAEARFGRA*
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mRNA from alignment at Ecto-sp13_S_contig98:5729..9249-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig98.21451.1 ID=mRNA_Ecto-sp13_S_contig98.21451.1|Name=mRNA_Ecto-sp13_S_contig98.21451.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3521bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98:5729..9249- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGTCGCTTGGAGCACTCACCTATCGAGAACTGCAGGCGTTCGCCAA
GCGTCATGGTGTGAAGGCGAACGGAAGTAGGGTGGATCTGATACAAAGAC
TGGTAAGAGATATTGTGGGGGGCGCAGATTTGGTTGTCTGTCCTATCAGG
CCTAGTGTTGTACGAAGCTCGATCCGCGGGCTTGTACATGTGTTGCGTGC
ATGCGTTGACTCACTACTTTTAATTAACGGAGAGATGTTTGTCCTAGCGC
TAAGTAATACCTGATGTTTTGTGCTGTCCGACCCCGGGTGCTTTTCATTT
ATTCGCCCGGCTTCGCGCGTTAGTCCGACACACACGGAGGTGACGACGAC
ACGCCGGTTGAAGACAACACCCAACCCGGAAGCGATGAAAGACCCGACAC
GGACAACGACAAGCCAGTTGAAAACATCACCCAACCCGGAAGCGATGGAA
CGACTCTAGGCGTGTCCGGCACGGACGCCGACAATCTCGTCACCCTTGAC
AGACCTCATGGCGCATGTGTCCAGTCTCAATATGACTCCGACCCCGACAA
GTCTCAACAAGGCAAGAGCGACTCGCAGGCTCTTGTCACAGACACGCCTG
CCGATGTGGCGGAGAGGGTCTATGCCACCATCAAGGTAGGACACACACAG
AAACAATCGCGTTGCGGCGAAAAATTGAAGCAGATGACCTGCAATACCTG
GATGTGATGCTCGGACAAACGCCGAAGGCAATATTTTTTCTCTACACCAA
GATCGTGTGCAGCGTATCTATGTATCTACTACATATCTGACCAGTACTGC
TGTCCCGGTAATCTTCCGCGTGCAACGGACGGTTGCGGTTTACCAAGCGC
AAACGTTAGATACGTAAATCAAGAAAGGTAGCTCTCATGTTTACAAGTAT
AGCATTCGCTGGCACTACTTCTGTAGCTTCTGGAGCGCCTCTTGCTCTAA
ACAAAATCTATGCTTCCAACGCAAAACTTTTCCTACACACCACCGAGCAG
ATGAAGCGAGTCCACGGCAGATACATACACCAGACGCCAACATTCACAGC
AGTATTTCACCAGTCTTCATGAACGCTATCTGCGTATATGCCGAACAGAA
AGCTCCGTTGGAACATCGAATTGATTATTTTGCACAATAGAGGAAGCGGA
GAGGGGAATTGACGCACAATTTTGTTGGGACTCTGCAGACCTATGTCGGA
TTGCTGTGCATACCGACAGACGCCTTTGCCGCTGTGCAAGTGGGCGCTGG
AACTGCTTTTTTCGTGTGTTTGGGGCAATACGTGCTCAGTCTGCCACATG
TTCTGGAGCATGTGTCTTGAGATTGTTCAACTAAAAACCTTAGATCGAGT
TTAGCACAGCTGATACGGAGCGTTAAGGGATGGTGCTCCGGCAGAGCCAA
AAGCTGCCGTGCGTAGGAAAACATTCAAATTTTTATTGTTTTCCGTTTTT
GCTGACTTAACACCTGAGGCAACATGGTCCAGCAGGCATGCGGCGGTTCA
TTTTGAGGCGCCTAAAGAAGTTAGAGGCTTTATGCGCCAGCTTGGCACCC
ATGTTGCATGACACCGTTGGAAGAAACCTCTTGTAAGGGGGCAGGAATGG
CTGTCCCGTTTGTGCCCGACTTTTTGAAGCCGACATAAGCCTGCTGTGGA
TTGCCGCTCATGTCGCAGGAAACACGAACCACCGGCGAAACACCCCAGAA
GACTAAGGTCAAACTGCCGGTTGCTGGCAGATTCGAGCGTGCGCACCAGA
ATCTCTTTGCGAGCCAGGCATCAATAGAACGCTATGGAAAGACTCCGAAG
AAGTCAGGTATGCGAACTTTCATGAGTCTTTCCAGGTAATCTGTTGCTTC
GCCTCAGCTCCCGCCATTCTCTGAAGAACACTTAAGTGTGTTTTGGTTCC
CCAGGTCAGATGACATCGCAAACGCTTCCGCGCTACTCGTTCCATGTGCA
GCACCTGCCAGGGAAAACGTTCCTCTGTCCAAGACCAAGGCATCTGCATC
CAAGGCCAGAGTGTTTGCGCCGACACCTGTCCGCCCTGTCGTTTCCGGAT
CTGCCGCCAAATCAAGCGTCAAGCGGGGCCTGACAGTGGCCAGCAAGCCG
TGCACACTGGTTGTTCAGCGCAGCACAAAAAAGCCGACGCAGGTGGAAGC
TTTTGTCTCTCGCAACTAATGGCACCCTCAACAAGGGAATGTCCACGATT
CGTTGGACAGTGTTGTTATTTTTGACAATGTCCATAACCATTTTTTGCCG
ACCTTATCAGTGAAAGTAGATTGTTTGCACCGAAAGAAATCTTGTAGAAT
CTTGGGGAAGATGCCAATGTTGTCGAACGATTGGCATCGTACGGCAAGAT
GTGATGGTAAATCCCACGCAGGTGAGGTCGGTCTGTTTAATCGCACATCG
AAAAACGAATCTCCAGCTCTTATGGCCTTTCGTTGCTTCAACAGGTGAAG
GAATTCCGCCTGAGCTCCAACCAGACTGGTAAACGGGAAGCGTTCACTTT
TAAACCCTACACTGGACCACTGCGCCCAATCGTGCCAGGTGGGTGATATT
GTCAATGCCAAAGCGTACGTAGCTGGTTTCTATGATTTATGGCACCACTA
TACTTCGAGGTGCGACCGGGCTGGAAAAATACTCAGAATTTCTTGTTCCT
CTTAGGCGTACTTGCTTGGTAACGTCTGAGGTGTCTTAAGGTCGCTATGC
GTTGGTCCATATTGATTCGAGGTCGCATCTACATCCCACAGAAGGTGCGT
CTATTTGGTGGTACGTCCTAAGATTGTTTCTATTTTTCAATCTATTTCTT
CTCCACCCCCGCGTCGCTCCTCATTTCCAGCAAACAACTCCAGCTTTAGC
ATTGGACATGCACTCAAGAAAGGATCCACCCCTGTCGGTCCGAAGGGAAT
TAAAGCAACCCTGGCGAGTGGTGAGGCGCAGAAAGCCCGGAAAGCAGCTC
GCGTCGAGTCTAGTAAGGCTCAACGAGACAAGAAATTGGCGGAGGCACGG
TTTGGTCGTGCCTAACTCGTTGCTGGCCATGACTGAGTCGCCCTATGCAT
CAAACTATACAAGAGAACGTACGCTTGCCCTTGGACGCATGCACGCTTGT
CCGCAGTCCAGACAATTTGGTTCGAGCGTGTTTTCTGTCCGACCATGAGA
AGCGAGGAGAGATCTTCTTCGCCGAATGGTGGTTGTTGTATCTAAAATTT
AGCCTTTGTTCGCTGGAAAGGAGCCATCTCTGCGGCAATGTCGTGTTGAG
TCATAGCAATATTGTTTGCATTGAGTAGATCGTGTTTTTTTTTCATTTCT
GCCTGTGCCTTTGTCGAGACATGTCCTGAAAACACCGACACAACTCTGCA
CCGCATACTTATTCGCTGTTCCAGTTTGATTAAAACTGCGTTGGTTAACT
AGCTAGCTGCATGTCGAAGATGGATGAAAGCGAATGCGTTTTTTGGGCGT
GCGACCTGTACGTGTGGGGTACACAGAAACGAGAAGTCACCACGGTAGAT
TCAAACATATGGCATTCACGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig98:5729..9249-

>mRNA_Ecto-sp13_S_contig98.21451.1 ID=mRNA_Ecto-sp13_S_contig98.21451.1|Name=mRNA_Ecto-sp13_S_contig98.21451.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1023bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98:5729..9249- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGTCGCTTGGAGCACTCACCTATCGAGAACTGCAGGCGTTCGCCAA
GCGTCATGGTGTGAAGGCGAACGGAAGTAGGGTGGATCTGATACAAAGAC
TGTCCGACACACACGGAGGTGACGACGACACGCCGGTTGAAGACAACACC
CAACCCGGAAGCGATGAAAGACCCGACACGGACAACGACAAGCCAGTTGA
AAACATCACCCAACCCGGAAGCGATGGAACGACTCTAGGCGTGTCCGGCA
CGGACGCCGACAATCTCGTCACCCTTGACAGACCTCATGGCGCATGTGTC
CAGTCTCAATATGACTCCGACCCCGACAAGTCTCAACAAGGCAAGAGCGA
CTCGCAGGCTCTTGTCACAGACACGCCTGCCGATGTGGCGGAGAGGGTCT
ATGCCACCATCAAGGAAACACGAACCACCGGCGAAACACCCCAGAAGACT
AAGGTCAAACTGCCGGTTGCTGGCAGATTCGAGCGTGCGCACCAGAATCT
CTTTGCGAGCCAGGCATCAATAGAACGCTATGGAAAGACTCCGAAGAAGT
CAGCACCTGCCAGGGAAAACGTTCCTCTGTCCAAGACCAAGGCATCTGCA
TCCAAGGCCAGAGTGTTTGCGCCGACACCTGTCCGCCCTGTCGTTTCCGG
ATCTGCCGCCAAATCAAGCGTCAAGCGGGGCCTGACAGTGGCCAGCAAGC
CGTGCACACTGGTTGTTCAGCGCAGCACAAAAAAGCCGACGCAGGTGAAG
GAATTCCGCCTGAGCTCCAACCAGACTGGTAAACGGGAAGCGTTCACTTT
TAAACCCTACACTGGACCACTGCGCCCAATCGTGCCAGCAAACAACTCCA
GCTTTAGCATTGGACATGCACTCAAGAAAGGATCCACCCCTGTCGGTCCG
AAGGGAATTAAAGCAACCCTGGCGAGTGGTGAGGCGCAGAAAGCCCGGAA
AGCAGCTCGCGTCGAGTCTAGTAAGGCTCAACGAGACAAGAAATTGGCGG
AGGCACGGTTTGGTCGTGCCTAA
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