mRNA_Ecto-sp13_S_contig97836.21434.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig97836.21434.1
Unique NamemRNA_Ecto-sp13_S_contig97836.21434.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig97836.21434.1 vs. uniprot
Match: D7G603_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G603_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 8.230e-10
Identity = 28/41 (68.29%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 GIEEVLNTLAERVIKRHPTVGYMRNTIQSYKDLRRMAPGRG 123
            GIE++L+TLAERV+ RHP+VGYMR TI  Y DL+R APG+G
Sbjct:  192 GIEDLLDTLAERVLVRHPSVGYMRMTIAVYLDLKRRAPGKG 232
[Close]
BLAST of mRNA_Ecto-sp13_S_contig97836.21434.1 vs. uniprot
Match: D7G5U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U4_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 6.280e-9
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 GIEEVLNTLAERVIKRHPTVGYMRNTIQSYKDLRRMAPGRG 123
            G E++L+TLAERV+ RHP+VGYMR TI  Y DL+R APG+G
Sbjct:  193 GTEDLLDTLAERVLVRHPSVGYMRMTIAVYLDLKRRAPGKG 233
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig97836.21434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G603_ECTSI8.230e-1068.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5U4_ECTSI6.280e-965.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig97836contigEcto-sp13_S_contig97836:104..226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size123
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size123
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464242.1797569-CDS-Ecto-sp13_S_contig97836:103..2261681464242.1797569-CDS-Ecto-sp13_S_contig97836:103..226Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig97836 104..226 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig97836.21434.1prot_Ecto-sp13_S_contig97836.21434.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig97836 104..226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig97836.21434.1

>prot_Ecto-sp13_S_contig97836.21434.1 ID=prot_Ecto-sp13_S_contig97836.21434.1|Name=mRNA_Ecto-sp13_S_contig97836.21434.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=41bp
GIEEVLNTLAERVIKRHPTVGYMRNTIQSYKDLRRMAPGRG
back to top

mRNA from alignment at Ecto-sp13_S_contig97836:104..226-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig97836.21434.1 ID=mRNA_Ecto-sp13_S_contig97836.21434.1|Name=mRNA_Ecto-sp13_S_contig97836.21434.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig97836:104..226- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGATCGAGGAAGTCCTCAACACTCTGGCGGAACGAGTGATAAAGAGACA
TCCCACGGTGGGATACATGCGGAACACTATCCAGTCTTACAAAGACCTTA
GGCGCATGGCACCAGGACGCGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig97836:104..226-

>mRNA_Ecto-sp13_S_contig97836.21434.1 ID=mRNA_Ecto-sp13_S_contig97836.21434.1|Name=mRNA_Ecto-sp13_S_contig97836.21434.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig97836:104..226- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGATCGAGGAAGTCCTCAACACTCTGGCGGAACGAGTGATAAAGAGACA
TCCCACGGTGGGATACATGCGGAACACTATCCAGTCTTACAAAGACCTTA
GGCGCATGGCACCAGGACGCGGG
back to top