|
|
Homology
BLAST of mRNA_Ecto-sp13_S_contig9772.21424.1 vs. uniprot
Match: D8LIH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIH3_ECTSI) HSP 1 Score: 337 bits (864), Expect = 5.520e-101 Identity = 177/202 (87.62%), Postives = 179/202 (88.61%), Query Frame = 0
Query: 82 MGTHIRVHPSRLDCAAIALVLAHNIRHGYGFTAPVTADVGVAHHHSPQDTAPRQAATCSASGGLCGGPRIRRGHPRRPRAARIPFALEAHAPDSDAANDKELEGGSRNRQQLRPRPYRDSGVRAGDADSSALPRQQRKSKADKGGRQATMSLSQLKATLREAKQYGDWRKALDVLDRMQEQGVKPDSQNYSSAIATCGNARQ 283
MGTH RVHPSRLDCAAI LVLAHNIR GYGF PVT DVGVAH HSPQDT P QAATC ASGGLCG PR RRGHPRRPRA RIPFALEAHAPD DAAN K+LEGGSRNRQQL RPYRDSGVRAG A SSALPRQQRKSKADKGGRQA M +S LKATLREAKQYGDWRKALDVLDRMQEQGVKPDSQNYSSAIA CGNARQ
Sbjct: 1 MGTHGRVHPSRLDCAAIGLVLAHNIRDGYGFWGPVT-DVGVAHRHSPQDTGPSQAATCGASGGLCGAPRTRRGHPRRPRAGRIPFALEAHAPDGDAANRKKLEGGSRNRQQLGARPYRDSGVRAGGAGSSALPRQQRKSKADKGGRQAGMPMSHLKATLREAKQYGDWRKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQ 201
BLAST of mRNA_Ecto-sp13_S_contig9772.21424.1 vs. uniprot
Match: A0A6H5L5M2_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M2_9PHAE) HSP 1 Score: 268 bits (684), Expect = 3.140e-75 Identity = 143/166 (86.14%), Postives = 145/166 (87.35%), Query Frame = 0
Query: 118 ADVGVAHHHSPQDTAPRQAATCSASGGLCGGPRIRRGHPRRPRAARIPFALEAHAPDSDAANDKELEGGSRNRQQLRPRPYRDSGVRAGDADSSALPRQQRKSKADKGGRQATMSLSQLKATLREAKQYGDWRKALDVLDRMQEQGVKPDSQNYSSAIATCGNARQ 283
A GV H HS QDTAPRQAATCSASGGLCG PR RRG PRR RAARIPFALEAHAPD DAAND ELE G R RQQL RPYRDSGVRAGDADSS PRQQRKSK DKGGRQA+MS+SQLKATLREAKQ GDWRKALDVLDRMQEQGVKPDSQNYSSAIA CGNARQ
Sbjct: 19 AFTGVTHRHSLQDTAPRQAATCSASGGLCGAPRTRRGRPRRLRAARIPFALEAHAPDGDAANDTELESGPRKRQQLGARPYRDSGVRAGDADSSTPPRQQRKSKTDKGGRQASMSMSQLKATLREAKQDGDWRKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQ 184
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 402..489
e-value: 6.6E-32
score: 112.3
coord: 530..630
e-value: 1.4E-33
score: 117.8 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 634..776
e-value: 2.9E-37
score: 130.7
coord: 233..401
e-value: 2.4E-53
score: 183.5 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF01535 | PPR | coord: 481..505
e-value: 0.0045
score: 17.1
coord: 654..683
e-value: 0.051
score: 13.8 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13041 | PPR_2 | coord: 406..455
e-value: 8.8E-13
score: 48.2
coord: 336..385
e-value: 4.6E-14
score: 52.3
coord: 686..733
e-value: 4.1E-11
score: 42.9
coord: 511..559
e-value: 2.3E-12
score: 46.9
coord: 581..630
e-value: 1.1E-11
score: 44.8 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13812 | PPR_3 | coord: 255..314
e-value: 8.1E-6
score: 25.8 |
| IPR002885 | Pentatricopeptide repeat | TIGRFAM | TIGR00756 | TIGR00756 | coord: 444..478
e-value: 8.3E-10
score: 36.2
coord: 339..372
e-value: 7.3E-6
score: 23.8
coord: 689..723
e-value: 2.8E-7
score: 28.3
coord: 305..338
e-value: 2.2E-6
score: 25.5
coord: 549..583
e-value: 2.3E-9
score: 34.8
coord: 481..513
e-value: 0.0013
score: 16.8
coord: 246..268
e-value: 7.3E-5
score: 20.7
coord: 374..408
e-value: 1.7E-10
score: 38.4
coord: 619..653
e-value: 9.0E-4
score: 17.3
coord: 271..303
e-value: 0.0017
score: 16.4
coord: 514..548
e-value: 7.0E-6
score: 23.9
coord: 409..443
e-value: 1.1E-6
score: 26.5
coord: 584..618
e-value: 1.5E-8
score: 32.3
coord: 654..688
e-value: 6.8E-4
score: 17.7
coord: 725..758
e-value: 3.4E-5
score: 21.7 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 617..651
score: 10.424 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 512..546
score: 11.805 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 302..336
score: 11.762 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 337..371
score: 11.871 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 407..441
score: 12.967 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 372..406
score: 13.23 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 652..686
score: 10.282 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 722..756
score: 9.756 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 232..266
score: 8.21 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 442..476
score: 13.176 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 687..721
score: 12.748 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 477..511
score: 11.433 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 547..581
score: 12.847 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 267..301
score: 9.778 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 582..616
score: 12.573 |
| None | No IPR available | PANTHER | PTHR46128 | FAMILY NOT NAMED | coord: 636..768
coord: 243..376
coord: 481..643
coord: 360..504
coord: 522..679
coord: 429..567 |
| None | No IPR available | PHOBIUS | CYTOPLASMIC_DOMAIN | Cytoplasmic domain | coord: 74..776 |
| None | No IPR available | PHOBIUS | TRANSMEMBRANE | Transmembrane region | coord: 54..73 |
| None | No IPR available | PHOBIUS | NON_CYTOPLASMIC_DOMAIN | Non cytoplasmic domain | coord: 1..53 |
| None | No IPR available | TMHMM | TMhelix | | coord: 50..72 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_Ecto-sp13_S_contig9772.21424.1 ID=prot_Ecto-sp13_S_contig9772.21424.1|Name=mRNA_Ecto-sp13_S_contig9772.21424.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=777bp
SEGKTEHLKWEGFCDLPARSAAKYCKNRQQRLRFVFFPPRRPVSMERCVC
FSKLVILLLVSFRSLLAVLLSLLSRKRMAVSMGTHIRVHPSRLDCAAIAL
VLAHNIRHGYGFTAPVTADVGVAHHHSPQDTAPRQAATCSASGGLCGGPR
IRRGHPRRPRAARIPFALEAHAPDSDAANDKELEGGSRNRQQLRPRPYRD
SGVRAGDADSSALPRQQRKSKADKGGRQATMSLSQLKATLREAKQYGDWR
KALDVLDRMQEQGVKPDSQNYSSAIATCGNARQWERAVELLASMAARGTP
PDVLTYSSAIAACAKGGQWETAVDLLQEMPAVGLAPDVITYSTVIDACAK
RGQWEPAFRLLMEMPTKGMVANIITYSIVIGACAKWGQWEEAVALLREMQ
EHGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVI
SACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWL
LREMPATGLTPNVISYNSAIDACAKTGRSKIAVDLLREMPTHGLAPDVIT
YSAVIASCAMGRQWEEALGLFKEMQRQGVTPDVVSCNTAINACAQGGRWE
EALDVLGEMPTMGLTPDAISYRTAIDACAKGGRWKEIADLLREIPAVGLT
PDAISYRSAMGACSADGLWKEALVLLRDMLAVGLSPDVVTYNSAINACAK
DGRWKEATVLLRQMPTFGLAPNVNSFNAAIDACGNGDQWGTAVDVLFEMR
ALGVSPNEMTYLTAMYACERCGEKGD* back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011990 | TPR-like_helical_dom_sf |
| IPR002885 | Pentatricopeptide_repeat |
|