mRNA_Ecto-sp13_S_contig97686.21419.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig97686.21419.1
Unique NamemRNA_Ecto-sp13_S_contig97686.21419.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig97686.21419.1 vs. uniprot
Match: A0A6H5K2A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 2.600e-46
Identity = 82/98 (83.67%), Postives = 86/98 (87.76%), Query Frame = 3 
Query:   54 RSANVIDSKPGGDMPYSLRFALAPCKTFVHNMPPVVTVGYGIRDAAKYGWVGLHSLDTTFFSRARFDPRLLEHVLGTDSGHSAVQRTLNHCHSFFQNA 347
            RSANV DS+ GGDM Y+LRFALA CKTFVHNMPPVV VG GIRDAAKYG VGLHSLDTTFFS ARF PRLLEHVLG DS H AVQ+TL+HCHSFFQNA
Sbjct:  472 RSANVSDSELGGDMSYALRFALARCKTFVHNMPPVVVVGCGIRDAAKYGRVGLHSLDTTFFSHARFGPRLLEHVLGADSSHGAVQKTLDHCHSFFQNA 569
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BLAST of mRNA_Ecto-sp13_S_contig97686.21419.1 vs. uniprot
Match: A0A6H5JH42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH42_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 9.300e-30
Identity = 56/67 (83.58%), Postives = 59/67 (88.06%), Query Frame = 3 
Query:  147 MPPVVTVGYGIRDAAKYGWVGLHSLDTTFFSRARFDPRLLEHVLGTDSGHSAVQRTLNHCHSFFQNA 347
            MPPV+ VG GIRDAAKYG VGLH LDTTFFS ARFD RLL+H LG DSGHSAV+RTLNHCHSFFQNA
Sbjct:    1 MPPVIIVGCGIRDAAKYGRVGLHLLDTTFFSHARFDARLLKHELGADSGHSAVRRTLNHCHSFFQNA 67
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BLAST of mRNA_Ecto-sp13_S_contig97686.21419.1 vs. uniprot
Match: D8LJ27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ27_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.660e-24
Identity = 51/68 (75.00%), Postives = 54/68 (79.41%), Query Frame = 3 
Query:  144 NMPPVVTVGYGIRDAAKYGWVGLHSLDTTFFSRARFDPRLLEHVLGTDSGHSAVQRTLNHCHSFFQNA 347
             +P   T+G    DAAKYG VGLHSLDTTFFS ARF PRLLEHVLG DS H AVQRTL+HCHSFFQNA
Sbjct:  270 KIPVEATLGANFWDAAKYGRVGLHSLDTTFFSHARFSPRLLEHVLGADSSHGAVQRTLDHCHSFFQNA 337
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig97686.21419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K2A3_9PHAE2.600e-4683.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH42_9PHAE9.300e-3083.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ27_ECTSI1.660e-2475.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig97686contigEcto-sp13_S_contig97686:41..387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size348
Hectar predicted targeting categoryother localisation
Exons1
Cds size255
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464240.855631-UTR-Ecto-sp13_S_contig97686:40..1321681464240.855631-UTR-Ecto-sp13_S_contig97686:40..132Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig97686 41..132 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464240.8756769-CDS-Ecto-sp13_S_contig97686:132..3871681464240.8756769-CDS-Ecto-sp13_S_contig97686:132..387Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig97686 133..387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig97686.21419.1prot_Ecto-sp13_S_contig97686.21419.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig97686 133..387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig97686.21419.1

>prot_Ecto-sp13_S_contig97686.21419.1 ID=prot_Ecto-sp13_S_contig97686.21419.1|Name=mRNA_Ecto-sp13_S_contig97686.21419.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
MPYSLRFALAPCKTFVHNMPPVVTVGYGIRDAAKYGWVGLHSLDTTFFSR
ARFDPRLLEHVLGTDSGHSAVQRTLNHCHSFFQNA
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mRNA from alignment at Ecto-sp13_S_contig97686:41..387+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig97686.21419.1 ID=mRNA_Ecto-sp13_S_contig97686.21419.1|Name=mRNA_Ecto-sp13_S_contig97686.21419.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=347bp|location=Sequence derived from alignment at Ecto-sp13_S_contig97686:41..387+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTGGTCCACCAACATCACACACGGCCTGAAAAATCTGAGCGTTCGCGA
TAAAGGAGCGCCAATGTCATCGACAGCAAGCCCGGAGGAGACATGCCGTA
CTCGCTGCGTTTCGCCCTGGCGCCATGCAAAACGTTTGTTCACAACATGC
CACCAGTGGTCACCGTTGGATATGGGATCAGGGACGCGGCCAAGTATGGG
TGGGTAGGTCTGCACTCGTTGGACACGACGTTCTTCAGCCGCGCAAGGTT
TGACCCCCGTCTTCTCGAGCACGTACTCGGTACCGACAGCGGCCACAGTG
CAGTGCAGAGGACCCTTAATCACTGCCATTCATTCTTCCAGAACGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig97686:41..387+

>mRNA_Ecto-sp13_S_contig97686.21419.1 ID=mRNA_Ecto-sp13_S_contig97686.21419.1|Name=mRNA_Ecto-sp13_S_contig97686.21419.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig97686:41..387+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGTACTCGCTGCGTTTCGCCCTGGCGCCATGCAAAACGTTTGTTCA
CAACATGCCACCAGTGGTCACCGTTGGATATGGGATCAGGGACGCGGCCA
AGTATGGGTGGGTAGGTCTGCACTCGTTGGACACGACGTTCTTCAGCCGC
GCAAGGTTTGACCCCCGTCTTCTCGAGCACGTACTCGGTACCGACAGCGG
CCACAGTGCAGTGCAGAGGACCCTTAATCACTGCCATTCATTCTTCCAGA
ACGCG
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