mRNA_Ecto-sp13_S_contig12589.2140.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12589.2140.1
Unique NamemRNA_Ecto-sp13_S_contig12589.2140.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12589.2140.1 vs. uniprot
Match: D8LFF2_ECTSI (Ribosomal_L16 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFF2_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 2.040e-58
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 3 
Query:    3 TGMRHAYGKPQGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYPREVCYVQGRKEGWLQKDGNSVKYIAQHGPL 287
            TGMRHAYGKPQGTTARV+IGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYPRE  YV+GRKEGWLQKDGNSVKYIAQHGPL
Sbjct:  113 TGMRHAYGKPQGTTARVAIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYPREE-YVRGRKEGWLQKDGNSVKYIAQHGPL 206
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12589.2140.1 vs. uniprot
Match: A0A7S2Y043_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y043_9STRA)

HSP 1 Score: 161 bits (407), Expect = 6.280e-48
Identity = 76/95 (80.00%), Postives = 86/95 (90.53%), Query Frame = 3 
Query:    3 TGMRHAYGKPQGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYPREVCYVQGRKEGWLQKDGNSVKYIAQHGPL 287
            TGMRHAYGKPQGT+ARV+IGQ+++S+R +DNH   AVEALRRAKFKFPGRQKIL+SNKWGFTK+ RE  YV+GRKEGWLQ DGNSVKYIA HGPL
Sbjct:  141 TGMRHAYGKPQGTSARVAIGQVLMSVRCRDNHAEIAVEALRRAKFKFPGRQKILRSNKWGFTKWEREE-YVKGRKEGWLQADGNSVKYIASHGPL 234
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12589.2140.1 vs. uniprot
Match: A0A7R9U1D6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1D6_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.790e-40
Identity = 67/95 (70.53%), Postives = 79/95 (83.16%), Query Frame = 3 
Query:    3 TGMRHAYGKPQGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYPREVCYVQGRKEGWLQKDGNSVKYIAQHGPL 287
            TGMRHAYGKP G +ARV+IGQII+SIR  D  +  A EALRRAKFKFPGRQKIL+SNKWGFT + R   YVQGR+EGW++KDGN  KY+++HGPL
Sbjct:  141 TGMRHAYGKPMGVSARVAIGQIIMSIRCADKIKHLAREALRRAKFKFPGRQKILESNKWGFTPFDRSE-YVQGRQEGWIEKDGNQAKYVSEHGPL 234
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12589.2140.1 vs. uniprot
Match: A0A835YXV3_9STRA (Ribosomal protein L10e/L16 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXV3_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.850e-39
Identity = 66/95 (69.47%), Postives = 80/95 (84.21%), Query Frame = 3 
Query:    3 TGMRHAYGKPQGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYPREVCYVQGRKEGWLQKDGNSVKYIAQHGPL 287
            +GMRH+YGKP  T ARVSIGQI++S+R+KD +  + +EALRRAKFKFPGRQKIL+S KWG TK+ RE  YV+GR+EGWL  DGN VKYI+QHGPL
Sbjct:  113 SGMRHSYGKPTETAARVSIGQILMSVRAKDANGASCIEALRRAKFKFPGRQKILRSEKWGLTKWSRED-YVRGRQEGWLVHDGNGVKYISQHGPL 206
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12589.2140.1 vs. uniprot
Match: A0A7S0Q982_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q982_9EUKA)

HSP 1 Score: 137 bits (346), Expect = 7.740e-39
Identity = 65/95 (68.42%), Postives = 80/95 (84.21%), Query Frame = 3 
Query:    3 TGMRHAYGKPQGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYPREVCYVQGRKEGWLQKDGNSVKYIAQHGPL 287
            +GMRH+YGKP    AR+SIGQII+S+RSKD +    +EALRRAKFKFPGRQKI++SNKWGFTK+ RE  YV+GRKEGW++ DG SVKYIA+HG +
Sbjct:  122 SGMRHSYGKPMEMAARISIGQIIVSVRSKDVNANHVIEALRRAKFKFPGRQKIMKSNKWGFTKFDRED-YVKGRKEGWIRPDGCSVKYIAEHGRI 215
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12589.2140.1 vs. uniprot
Match: K3WC86_GLOUD (Ribosomal_L16 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WC86_GLOUD)

HSP 1 Score: 134 bits (337), Expect = 1.020e-38
Identity = 67/95 (70.53%), Postives = 72/95 (75.79%), Query Frame = 3 
Query:    3 TGMRHAYGKPQGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYPREVCYVQGRKEGWLQKDGNSVKYIAQHGPL 287
            TGMRH YGKP G  ARV+IGQ IIS+RSKDN  P  VEALRRAKFKFPGRQK+L S KWGFTKY REV Y Q R +G L  DGN  KY+  HGPL
Sbjct:   26 TGMRHTYGKPTGVAARVAIGQPIISVRSKDNFGPAVVEALRRAKFKFPGRQKVLGSKKWGFTKYEREV-YAQMRADGSLSLDGNHEKYMPNHGPL 119
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12589.2140.1 vs. uniprot
Match: A0A482SVX4_9ARCH (50S ribosomal protein L16 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SVX4_9ARCH)

HSP 1 Score: 132 bits (333), Expect = 5.140e-37
Identity = 62/95 (65.26%), Postives = 76/95 (80.00%), Query Frame = 3 
Query:    3 TGMRHAYGKPQGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYPREVCYVQGRKEGWLQKDGNSVKYIAQHGPL 287
            +GMR ++GKP    AR++IGQII S+R+KDN+    +EALRRAKFKFPGRQKI++SNKWGFTK+ R   Y  GRKEGWL  DG SVKYIA+HGP+
Sbjct:  105 SGMRGSFGKPMEMAARIAIGQIIFSVRAKDNNAQHVIEALRRAKFKFPGRQKIMRSNKWGFTKFDRRE-YTHGRKEGWLLADGASVKYIAEHGPI 198
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12589.2140.1 vs. uniprot
Match: A0A7S2RVF9_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RVF9_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.010e-36
Identity = 65/95 (68.42%), Postives = 73/95 (76.84%), Query Frame = 3 
Query:    3 TGMRHAYGKPQGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYPREVCYVQGRKEGWLQKDGNSVKYIAQHGPL 287
            TGMRHAYGKPQG  ARV IGQI+IS+R K  H P A+EALRR+KFKFPGRQKI+ S KWGFTKY     YV+ RKEG L  DGN VKY+ + GPL
Sbjct:  113 TGMRHAYGKPQGVCARVKIGQILISVRCKKQHLPIAMEALRRSKFKFPGRQKIVTSKKWGFTKYDTAE-YVRMRKEGLLIPDGNQVKYLGRRGPL 206
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12589.2140.1 vs. uniprot
Match: A0A5D6Y3Y7_9STRA (Ribosomal_L16 domain-containing protein n=4 Tax=Pythium TaxID=4797 RepID=A0A5D6Y3Y7_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.070e-36
Identity = 66/95 (69.47%), Postives = 72/95 (75.79%), Query Frame = 3 
Query:    3 TGMRHAYGKPQGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYPREVCYVQGRKEGWLQKDGNSVKYIAQHGPL 287
            TGMRHAYGKP G  ARV+IGQ IIS+RSKD +    VEALRRAKFKFPGRQK+L S KWGFTKY REV Y Q R +G L  DGN  KY+  HGPL
Sbjct:  113 TGMRHAYGKPAGVAARVAIGQPIISVRSKDQYGAAVVEALRRAKFKFPGRQKVLGSKKWGFTKYEREV-YAQMRADGSLALDGNHEKYMPNHGPL 206
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12589.2140.1 vs. uniprot
Match: F0WNC8_9STRA (60S ribosomal protein L10 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WNC8_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.560e-36
Identity = 66/95 (69.47%), Postives = 73/95 (76.84%), Query Frame = 3 
Query:    3 TGMRHAYGKPQGTTARVSIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYPREVCYVQGRKEGWLQKDGNSVKYIAQHGPL 287
            TGMRHAYGKP GT ARV+IGQ IIS+R+KDN  P  VEALRRAKFKFPGRQK+L S KWGFTKY RE  Y + R +G L  DGN  KY+  HGPL
Sbjct:  113 TGMRHAYGKPAGTAARVAIGQPIISVRTKDNFGPACVEALRRAKFKFPGRQKVLGSKKWGFTKYEREE-YAKLRADGTLIVDGNHEKYMPLHGPL 206
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12589.2140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFF2_ECTSI2.040e-5895.79Ribosomal_L16 domain-containing protein n=2 Tax=Ec... [more]
A0A7S2Y043_9STRA6.280e-4880.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9U1D6_9STRA1.790e-4070.53Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A835YXV3_9STRA1.850e-3969.47Ribosomal protein L10e/L16 n=2 Tax=Tribonema minus... [more]
A0A7S0Q982_9EUKA7.740e-3968.42Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
K3WC86_GLOUD1.020e-3870.53Ribosomal_L16 domain-containing protein n=1 Tax=Gl... [more]
A0A482SVX4_9ARCH5.140e-3765.2650S ribosomal protein L16 n=1 Tax=archaeon TaxID=1... [more]
A0A7S2RVF9_9STRA2.010e-3668.42Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A5D6Y3Y7_9STRA2.070e-3669.47Ribosomal_L16 domain-containing protein n=4 Tax=Py... [more]
F0WNC8_9STRA2.560e-3669.4760S ribosomal protein L10 putative n=1 Tax=Albugo ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12589contigEcto-sp13_S_contig12589:2883..4241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size291
Hectar predicted targeting categoryother localisation
Exons3
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462671.4549909-CDS-Ecto-sp13_S_contig12589:2882..29471681462671.4549909-CDS-Ecto-sp13_S_contig12589:2882..2947Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12589 2883..2947 +
1681462671.465172-CDS-Ecto-sp13_S_contig12589:3508..36521681462671.465172-CDS-Ecto-sp13_S_contig12589:3508..3652Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12589 3509..3652 +
1681462671.474085-CDS-Ecto-sp13_S_contig12589:4160..42391681462671.474085-CDS-Ecto-sp13_S_contig12589:4160..4239Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12589 4161..4239 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12589.2140.1prot_Ecto-sp13_S_contig12589.2140.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12589 2883..4239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12589.2140.1

>prot_Ecto-sp13_S_contig12589.2140.1 ID=prot_Ecto-sp13_S_contig12589.2140.1|Name=mRNA_Ecto-sp13_S_contig12589.2140.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=96bp
RPVCATRTESRKARPRVSPLDRSSSPSGPRTTTVPRRWRHSGVRSSSSPA
ARRSSSPTSGVSPSTPGRYVTSRVARRAGCRRTATPSSTSPSTDLS
back to top

mRNA from alignment at Ecto-sp13_S_contig12589:2883..4241+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12589.2140.1 ID=mRNA_Ecto-sp13_S_contig12589.2140.1|Name=mRNA_Ecto-sp13_S_contig12589.2140.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1359bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12589:2883..4241+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGACCGGTATGCGCCACGCGTACGGAAAGCCGCAAGGCACGACCGCGCGT
GTCTCCATTGGACAGGTGTGTTTCTCGTTTCTTTTCGTGTCTTGAAGAAG
CCCTCTTGCTGGTGTTCTTTGTGGCTGCCGCTGTTGTGTACTCCGGCTCT
TTGGACACGATCATTAATGACATTGAACGGCATCCTTCGCGTAGAGGTGG
TGGAAAACAAGGCTGGTGTAGGACATCCTTGACGATCTTTGTGGACCACA
TATTTTCTCTAGGACAGCTTCCTTTTTTTCCGGCACTTTGACTCTGCATC
CATTCTCATCGGTTTTCATTTCGGGCGCCTTCTTTCGCTCGGAGCATTTT
TCCCGCAGCCCCACGTCCCGATCCACTGCTGTCCCTGCTCTCTTGCGCAA
CAAAACGTTTGGAGACACCGTTTGTGTTTTGGCATGCTGCGACCAGAAAT
CGTGTCCCGTCAGTTGCAGCACATTTTGTTCTGACAAAGTCTTGCCGGAA
CCAGTCTCCCCCCCCTTTTGGCCTCCTTGACCTATCGGTTTTTGTGTTTG
GTTCTTGCTCACTTTTTCCGCGTGCCACGTCCTCTTGCGCTTGGTTGCAT
GTATTTTTCTACTACGATATCTCCAGATCATCATCTCCATCCGGTCCAAG
GACAACCACCGTCCCACGGCGGTGGAGGCACTCCGGCGTGCGAAGTTCAA
GTTCCCCGGCCGCCAGAAGATCCTCCAGTCCAACAAGTGGGGTTTCACCA
AGTACCCCAGGGAGGTATGTGTATGTGTATGGTGTCTGTGGCCTTGTTGC
GTGATTTGTTTTTAGACAATCTATGCGTGTATCATTTCAAAGAAAGGTTA
GCCGTTCGAGATATAACCGTAGTCCGGACCTTTGTTTTTTGTGAAAGTGG
TATGCTTCTCTGACGCGGAGTATGTGGGACCTGAACGTCTGGACGTGTTT
GTTGGTTCCTCCCACCGAATTACTACAGGGTTGCGTGTGTGTACGCAAGC
CTTTCGCCGATCCGTTTGCATGGAGTACATGCATGCGCTTTCATTTTGCG
CGTAAGTTAACACTGATCCACAAGAACTTGCATGCACGTTAATTTTGTAC
CAAACTTCGAAAGTAGCCAAGTTGTTCGATGCTCTCAACAGTCGTCGAAA
TTTTCCTGGAGAGGGCAATGTACATTCAAAATACGTTCAACCCACGCTTG
TGCGTTTTTTTCACGTATCGTTGCTCCGTCTCTTTGTATTCAACCCCTGC
TGTGCGATCCACGACACGAAAACAGGAGTACGTCCAGGGTCGCAAGGAGG
GCTGGCTGCAGAAGGACGGCAACTCCGTCAAGTACATCGCCCAGCACGGA
CCTCTCGCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12589:2883..4241+

>mRNA_Ecto-sp13_S_contig12589.2140.1 ID=mRNA_Ecto-sp13_S_contig12589.2140.1|Name=mRNA_Ecto-sp13_S_contig12589.2140.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12589:2883..4241+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGACCGGTATGCGCCACGCGTACGGAAAGCCGCAAGGCACGACCGCGCGT
GTCTCCATTGGACAGATCATCATCTCCATCCGGTCCAAGGACAACCACCG
TCCCACGGCGGTGGAGGCACTCCGGCGTGCGAAGTTCAAGTTCCCCGGCC
GCCAGAAGATCCTCCAGTCCAACAAGTGGGGTTTCACCAAGTACCCCAGG
GAGGTATGTTACGTCCAGGGTCGCAAGGAGGGCTGGCTGCAGAAGGACGG
CAACTCCGTCAAGTACATCGCCCAGCACGGACCTCTCG
back to top