mRNA_Ecto-sp13_S_contig9721.21357.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9721.21357.1 vs. uniprot
Match: A0A6H5KYF7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYF7_9PHAE) HSP 1 Score: 589 bits (1519), Expect = 5.260e-206 Identity = 293/313 (93.61%), Postives = 304/313 (97.12%), Query Frame = 1
Query: 1 LQQLLTTYRESKDAAQNLERILERMEEDGLQPDVTTYNHILDLHALLHNSEAAVAVYEEMLSRGVKPNHRTASHMIVAHSRGCHDTMYRAVEEMYAKGWQGSRAACLSMIAVMGVRCDYDGVLHTIHRMREESKLPTEAAFVWAYRAAEHLGQVETAKQLFQHRAEAGLPPAEYVYVKMMLILMKAGKAEECLEYWRRLVCVHGFNGVVIHPETYNLAIKCTMVVDNQDEMEAVLAMMEAQRVVPTDDTYSAALGGLEKWFTPHRAQGAQRAFEAIARSGPPPSTRVLQRKAKGFAHAGLWQEAEELFSLVVS 939
L+QLLTTYRESKDAAQNLER++ERMEEDGLQPDVTTYNHILDLHALLHNSEAAVAVYEEMLSRGV+PN RTASHMIVAHSRGCHD MYRAVEEMYAKGWQGSR ACL MIAVMG+R DYDGVL+TI RMREESKLPTEAAFVWAYRAAE+LGQVETAKQLFQHRAEAGLPPAEYVYVKMM ILMKAGKAEECLEYWR+LVCVHGFNGVVIHPETYNLAIKCTMVV NQDEMEAVLAMMEAQRVVPTDDTYSAALGGLEKWFTPHRA+GAQRAFEAIARSGPPPSTRVLQRKAKG AHAGLWQEAEELFSLV++
Sbjct: 159 LKQLLTTYRESKDAAQNLERVIERMEEDGLQPDVTTYNHILDLHALLHNSEAAVAVYEEMLSRGVEPNQRTASHMIVAHSRGCHDAMYRAVEEMYAKGWQGSRVACLGMIAVMGIRRDYDGVLYTIRRMREESKLPTEAAFVWAYRAAENLGQVETAKQLFQHRAEAGLPPAEYVYVKMMSILMKAGKAEECLEYWRQLVCVHGFNGVVIHPETYNLAIKCTMVVGNQDEMEAVLAMMEAQRVVPTDDTYSAALGGLEKWFTPHRARGAQRAFEAIARSGPPPSTRVLQRKAKGCAHAGLWQEAEELFSLVLA 471
BLAST of mRNA_Ecto-sp13_S_contig9721.21357.1 vs. uniprot
Match: D8LG81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG81_ECTSI) HSP 1 Score: 583 bits (1502), Expect = 1.920e-203 Identity = 289/313 (92.33%), Postives = 302/313 (96.49%), Query Frame = 1
Query: 1 LQQLLTTYRESKDAAQNLERILERMEEDGLQPDVTTYNHILDLHALLHNSEAAVAVYEEMLSRGVKPNHRTASHMIVAHSRGCHDTMYRAVEEMYAKGWQGSRAACLSMIAVMGVRCDYDGVLHTIHRMREESKLPTEAAFVWAYRAAEHLGQVETAKQLFQHRAEAGLPPAEYVYVKMMLILMKAGKAEECLEYWRRLVCVHGFNGVVIHPETYNLAIKCTMVVDNQDEMEAVLAMMEAQRVVPTDDTYSAALGGLEKWFTPHRAQGAQRAFEAIARSGPPPSTRVLQRKAKGFAHAGLWQEAEELFSLVVS 939
L+QLL+TY ESKDAAQNLER+LERMEEDGLQPDVTTYNHILD HALLHNSEAAVAV+EEMLSRGV+PN RTASHMIVAHSRGCHDTMYRAVEEMYAKGWQGSR ACL MIAVMG R DYDGVL+TI RMREESKLPTEAAFVWAYRAAEHLGQVETAKQLF HRAEAGLPPAEYVYVKMMLILMKAGKAEECLEYWR+LVCVHG NGVVIHPETYNLAIKCTMVVDNQDEMEAVLAMMEAQRVVPTD+TY+AALGGLEKWFTPHRAQGAQRAFEAIARSGPPPS RVLQRKAKG+AHAGLWQEAE+LFSLV++
Sbjct: 159 LKQLLSTYGESKDAAQNLERVLERMEEDGLQPDVTTYNHILDFHALLHNSEAAVAVHEEMLSRGVEPNQRTASHMIVAHSRGCHDTMYRAVEEMYAKGWQGSRTACLGMIAVMGFRRDYDGVLYTIRRMREESKLPTEAAFVWAYRAAEHLGQVETAKQLFHHRAEAGLPPAEYVYVKMMLILMKAGKAEECLEYWRQLVCVHGLNGVVIHPETYNLAIKCTMVVDNQDEMEAVLAMMEAQRVVPTDETYAAALGGLEKWFTPHRAQGAQRAFEAIARSGPPPSMRVLQRKAKGWAHAGLWQEAEQLFSLVLA 471
BLAST of mRNA_Ecto-sp13_S_contig9721.21357.1 vs. uniprot
Match: A0A6H5KCB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCB7_9PHAE) HSP 1 Score: 156 bits (394), Expect = 1.850e-39 Identity = 99/301 (32.89%), Postives = 155/301 (51.50%), Query Frame = 1
Query: 31 SKDAAQNLERILERM-EEDGLQPDVTTYNHILDLHALLHNSEAAVAVYEEMLSRGVKPNHRTASHMIVAHSRGCHDTMYRAVEEMYAKGWQGSRAACLSMIAVMGVRCDYDGVLHTIHRMREESKLPTEAAFVWAYRAAEHLGQVETAKQLFQHRAEAGLPPAEYVYVKMMLILMKAGKAEECLEYWRRLVCVHGFNGVVIHPETYNLAIKCTMVVDNQDEMEAVLAMMEAQRVVPTDDTYSAALGGLEKWFTPHRAQGAQ--RAFEAIARSGPPPSTRVLQRKAKGFAHAGLWQEAEELF 924
++D + ++R+ E+M E+DGL+P+ TY+H++ ++ + AV + EEM +G++P +T S MIVAHS G + M R +EM KGW +R A +MI + D++G+L T M E + TEA V A +AA ++G A++L + P E +YV +M+ L A + EECL WR LV + G V + TYNLA+ + + DEME +L MM+ Q V PT T+ + + + W + + F + R P V A +A W +A F
Sbjct: 158 TEDKLKEMKRLFEQMTEDDGLEPEALTYSHLIHGYSQVRKEGEAVRLLEEMAVKGLQPERKTLSSMIVAHSWGSIEDMRRVSKEMQEKGWTPTRRANSAMIGALWRAEDWEGILDTTRAMLEAGQTMTEAGLVVAIKAATNVGNAGFARELLLIHGKNKHRPQEQLYVLVMVALRNASQHEECLACWRELVLLDGLGDVKLDGRTYNLALMSAVKTERWDEMETILDMMQVQAVEPTVATWRSIV---DVWNAEETGDEGRLDQIFGEMVRREWRPDRAVRLHVAMAYARCRAWVKAMAWF 455
BLAST of mRNA_Ecto-sp13_S_contig9721.21357.1 vs. uniprot
Match: D7FK78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK78_ECTSI) HSP 1 Score: 153 bits (386), Expect = 1.170e-38 Identity = 103/311 (33.12%), Postives = 160/311 (51.45%), Query Frame = 1
Query: 1 LQQLLTTYRESKDAAQNLERILERM-EEDGLQPDVTTYNHILDLHALLHNSEAAVAVYEEMLSRGVKPNHRTASHMIVAHSRGCHDTMYRAVEEMYAKGWQGSRAACLSMIAVMGVRCDYDGVLHTIHRMREESKLPTEAAFVWAYRAAEHLGQVETAKQLFQHRAEAGLPPAEYVYVKMMLILMKAGKAEECLEYWRRLVCVHGFNGVVIHPETYNLAIKCTMVVDNQDEMEAVLAMMEAQRVVPTDDTYSAALGGLEKWFTPHRAQGAQ--RAFEAIARSGPPPSTRVLQRKAKGFAHAGLWQEAEELF 924
L+ + T R ++D + +ER+ E+M E+D L+P+ TY+H++ ++ AV + EEM +G++P +T S MIVAHS G + M R EM KGW ++ A +MI + D++G+L T M E + TEA V A +AA + G A++L + P E +YV +M+ L A + EECL WR LV + G V ++ +TYNLA+ + ++ DEMEA+L MM+A+ V T T+ + + + W + R F I R P V A +A W +A F
Sbjct: 69 LKMIATDERMTEDKMKEMERLFEQMTEDDELEPEALTYSHLIYGYSQGRKEGEAVRLLEEMTVKGLQPERKTLSSMIVAHSWGSVEDMRRVSSEMREKGWTPTQRANSAMIGALRRAEDWEGILDTTRAMLENGQTMTEAGLVVAIKAAANAGNAGFARELLLTHGKNKHRPQEQLYVCVMVALRNACQHEECLACWRELVLLDGLGDVKLNGKTYNLALTSAVKMERWDEMEAILDMMQAKAVESTVATWRSMV---DVWSAEETGDEGRLDRIFGEIHRRQWRPDRAVGLHAAMAYARCRAWVKAMAWF 376
BLAST of mRNA_Ecto-sp13_S_contig9721.21357.1 vs. uniprot
Match: D7FK81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK81_ECTSI) HSP 1 Score: 124 bits (311), Expect = 1.120e-28 Identity = 61/138 (44.20%), Postives = 92/138 (66.67%), Query Frame = 1
Query: 304 SRAACLSMIAVMGVRCDYDGVLHTIHRMREESKLPTEAAFVWAYRAAEHLGQVETAKQLFQHRAEAGLPPAEYVYVKMMLILMKAGKAEECLEYWRRLVCVHGFNGVVIHPETYNLAIKCTMVVDNQDEMEAVLAMME 717
++ A SMI+ + + D+ G+L TI+ M EE +PTEA F + A LG VE AK L + R++AG+PP + +V +M+ L +AGK E+ LEYWRRLVCV G +G+ I PET+ LA++ + + DE+EA++ MM+
Sbjct: 4 TKVAYQSMISGLRIGEDWQGILTTINEMLEEEVVPTEAGFAVGFMTARKLGDVEFAKMLLERRSQAGMPPRQDFFVNVMVTLGEAGKPEDFLEYWRRLVCVQGIDGLGIRPETFYLALRTAVKIKAWDEVEAIIGMMQ 141
BLAST of mRNA_Ecto-sp13_S_contig9721.21357.1 vs. uniprot
Match: A0A368RWQ9_SETIT (Uncharacterized protein n=1 Tax=Setaria italica TaxID=4555 RepID=A0A368RWQ9_SETIT) HSP 1 Score: 55.1 bits (131), Expect = 8.970e-5 Identity = 56/194 (28.87%), Postives = 82/194 (42.27%), Query Frame = 1
Query: 88 LQPDVTTYNHILDLHALLHNSEAAVAVYEEMLSRGVKPNHRT------ASHMIVAHSRGCHDTMY-------------RAVEEMYAKGWQGSRA-------------ACLSMIAVMGVRCDYDGVLHTIHRMREESKLPTEAAFVWAYRAAEHLGQVETAKQLFQHRAEAGLPPAEYVYVKMMLILMKAGKAEE 573
L+ DV T+N ++ +A L +S AAV++Y++ML+ G+KPN T A +VA RG Y A+ +MYAK Q A A MI+ G+ + L M S P F+ A H G VE ++LF + L P Y M+ +L K+G +E
Sbjct: 313 LKGDVVTWNALISSYAHLGHSNAAVSLYDQMLTEGLKPNSATLITVISACANLVALERGEQVHSYVKEMGWESDVSISTALVDMYAKCGQLGIARRIFDSMLQRDVVAWNVMISGYGMHGEAKQALELFGEMERGSVKPNGVTFLAILSACCHSGFVEEGRKLFTRMGKYSLEPNLKHYACMVDLLGKSGHLQE 506
BLAST of mRNA_Ecto-sp13_S_contig9721.21357.1 vs. uniprot
Match: K3Y5D5_SETIT (Uncharacterized protein n=5 Tax=Paniceae TaxID=147428 RepID=K3Y5D5_SETIT) HSP 1 Score: 55.1 bits (131), Expect = 9.820e-5 Identity = 56/194 (28.87%), Postives = 82/194 (42.27%), Query Frame = 1
Query: 88 LQPDVTTYNHILDLHALLHNSEAAVAVYEEMLSRGVKPNHRT------ASHMIVAHSRGCHDTMY-------------RAVEEMYAKGWQGSRA-------------ACLSMIAVMGVRCDYDGVLHTIHRMREESKLPTEAAFVWAYRAAEHLGQVETAKQLFQHRAEAGLPPAEYVYVKMMLILMKAGKAEE 573
L+ DV T+N ++ +A L +S AAV++Y++ML+ G+KPN T A +VA RG Y A+ +MYAK Q A A MI+ G+ + L M S P F+ A H G VE ++LF + L P Y M+ +L K+G +E
Sbjct: 487 LKGDVVTWNALISSYAHLGHSNAAVSLYDQMLTEGLKPNSATLITVISACANLVALERGEQVHSYVKEMGWESDVSISTALVDMYAKCGQLGIARRIFDSMLQRDVVAWNVMISGYGMHGEAKQALELFGEMERGSVKPNGVTFLAILSACCHSGFVEEGRKLFTRMGKYSLEPNLKHYACMVDLLGKSGHLQE 680 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9721.21357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9721.21357.1 >prot_Ecto-sp13_S_contig9721.21357.1 ID=prot_Ecto-sp13_S_contig9721.21357.1|Name=mRNA_Ecto-sp13_S_contig9721.21357.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=313bp LQQLLTTYRESKDAAQNLERILERMEEDGLQPDVTTYNHILDLHALLHNSback to top mRNA from alignment at Ecto-sp13_S_contig9721:687..5404+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9721.21357.1 ID=mRNA_Ecto-sp13_S_contig9721.21357.1|Name=mRNA_Ecto-sp13_S_contig9721.21357.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4718bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9721:687..5404+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9721:687..5404+ >mRNA_Ecto-sp13_S_contig9721.21357.1 ID=mRNA_Ecto-sp13_S_contig9721.21357.1|Name=mRNA_Ecto-sp13_S_contig9721.21357.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=939bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9721:687..5404+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |