mRNA_Ecto-sp13_S_contig97.21336.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig97.21336.1
Unique NamemRNA_Ecto-sp13_S_contig97.21336.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig97.21336.1 vs. uniprot
Match: D8LNE8_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNE8_ECTSI)

HSP 1 Score: 378 bits (971), Expect = 1.770e-124
Identity = 197/217 (90.78%), Postives = 199/217 (91.71%), Query Frame = 2 
Query:  188 MCIESLPRRPHVVTFDNALLALKLAPGARGRGAVLDGWTDPIGAHDQKVIEVEQAMLQEKELVSAIKYCTRVEKNWMVAMGLLNEQPHKLEEYVALKFEMKTFEKRFARATVLTEKLELQSQWEKYCAMEPMYEKASTAVKSLSNYAECFLQILAAKEQCDLVKVDREQAQADVLAHGRTMAKLKREEVEAAEKITDDHVHACDRGKSLGDIFPSIR 838
            MCIESLPRRPHVVTFDNALLALKLAPGARG+GAVLDGWTDPIGAHDQKVIEVEQAMLQEKELVSAIKYCTRVEKNWMVAMGLLNEQPHKLEEYVALKFEMKTFEKRFARA+VLTEKLELQSQWEKYCAMEPMYEK                 ILAAKEQ DLVKVDREQAQADVLAHGRTMAKLKREEVEAAEKITDDHVHACDRGKSLGDIFPSIR
Sbjct:    1 MCIESLPRRPHVVTFDNALLALKLAPGARGKGAVLDGWTDPIGAHDQKVIEVEQAMLQEKELVSAIKYCTRVEKNWMVAMGLLNEQPHKLEEYVALKFEMKTFEKRFARASVLTEKLELQSQWEKYCAMEPMYEK-----------------ILAAKEQYDLVKVDREQAQADVLAHGRTMAKLKREEVEAAEKITDDHVHACDRGKSLGDIFPSIR 200
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig97.21336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNE8_ECTSI1.770e-12490.78Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig97contigEcto-sp13_S_contig97:31363..34207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score384.8
Seed ortholog evalue3.1e-104
Seed eggNOG ortholog2880.D8LNE8
Model size889
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-04_004120.1
Cds size750
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464233.9200106-UTR-Ecto-sp13_S_contig97:31362..315011681464233.9200106-UTR-Ecto-sp13_S_contig97:31362..31501Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig97 31363..31501 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464233.9323518-CDS-Ecto-sp13_S_contig97:31501..317351681464233.9323518-CDS-Ecto-sp13_S_contig97:31501..31735Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig97 31502..31735 +
1681464233.9429498-CDS-Ecto-sp13_S_contig97:33588..338201681464233.9429498-CDS-Ecto-sp13_S_contig97:33588..33820Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig97 33589..33820 +
1681464233.9539766-CDS-Ecto-sp13_S_contig97:33923..342071681464233.9539766-CDS-Ecto-sp13_S_contig97:33923..34207Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig97 33924..34207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig97.21336.1prot_Ecto-sp13_S_contig97.21336.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig97 31502..34207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig97.21336.1

>prot_Ecto-sp13_S_contig97.21336.1 ID=prot_Ecto-sp13_S_contig97.21336.1|Name=mRNA_Ecto-sp13_S_contig97.21336.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=250bp
MPQSIIAKKPVATHPDMCIESLPRRPHVVTFDNALLALKLAPGARGRGAV
LDGWTDPIGAHDQKVIEVEQAMLQEKELVSAIKYCTRVEKNWMVAMGLLN
EQPHKLEEYVALKFEMKTFEKRFARATVLTEKLELQSQWEKYCAMEPMYE
KASTAVKSLSNYAECFLQILAAKEQCDLVKVDREQAQADVLAHGRTMAKL
KREEVEAAEKITDDHVHACDRGKSLGDIFPSIRASKRNYLTPRHTDCFD*
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mRNA from alignment at Ecto-sp13_S_contig97:31363..34207+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig97.21336.1 ID=mRNA_Ecto-sp13_S_contig97.21336.1|Name=mRNA_Ecto-sp13_S_contig97.21336.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2845bp|location=Sequence derived from alignment at Ecto-sp13_S_contig97:31363..34207+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATTTGCGACCACTGGAGAGAGCCCCAGTGCCGCGCACAAAGCAGTCTAG
AGTGCGCGGCTCGGTGAAGAATCTCCAGCAGGCAATCCTCCACTGGTTTG
ACTACTAACTCGAAAGTTCCAACGCCACGGGGTGCAAAAATGCCTCAATC
TATTATAGCGAAGAAGCCTGTGGCGACCCATCCAGATATGTGTATCGAGA
GCCTTCCACGTAGGCCGCACGTCGTCACGTTCGACAACGCACTCTTAGCC
CTCAAGCTCGCTCCCGGGGCGAGGGGAAGAGGCGCAGTCCTCGACGGCTG
GACCGATCCTATCGGGGCGCACGATCAGAAAGTCATTGAGGTCGAGCAGG
CCATGCTCCAGGAGAAGGAGTTGGTGAGCGGCAACTATTAATAACACGTG
GTTTGTGTTACTGCAGTACAGCCTCATACCGATCGACGTTGATATCATGT
TTCCTAATATAGACAAACACAGAAAGACTATCCATGAGAGTTGTGACCAC
AGTCGAACGGGATGTGTTGAAGTCTTCACAGTGAATGTAGGGAAACCGCT
GGGTACAAGGCTTATTTGGAGTCTGCTGAAGCCTCCACACTGAAAAAATC
TGTTTATCTGTGATGCCAGCAGGTTCTAATCACAAAATCACTCTACAATA
GGTACAAACACCACAAGACATCTCCCCGGCAGTTTCTCCATCTACGGGGT
CACAGCTTTTTTCGAAGACTATCCTTCTTGTCACCAAAATGGATTTCCGT
GTACGCCAGAATCCCGCGGGCTACTTCAGACGGCTTTGACACTTCGATTC
GAATTACGGTTTCAAATATGATTCCTTGTGTTCGGATATTTGGGTGGGTG
TGTGCAAAGTAGGAGCAGTAGATTGGGGGATCGTTTTCCAACACAAGCCA
AGCCATCTCTTGGTTCGTACATGACATGCCCCTTTGGGTGCCGGGTTCAA
TGGTTCTTGTTCAATACTGTGAAACTTAATGACACCCAGTAAAAGACGCT
TGTTAACTCTTCTGCCAAAATAAACCTATCTGCATGTAGAAGCAGGATTG
CTTATAGGGTTCCTGACGCTTCGACGCTCCTCGCGTTTCCGGGCTCCCAC
CGGTAGGTGCCTACTTCTGGCATGGACAAAGGGTCTCTCACCGCAGGCGC
CTGGAGGCGAAAAATCTTAACATTCATCTCACGTAACTTGGTTTTCGACT
AGGTTTTCGCCTACGGCTGGCCTGAAATGCATGTGGCCTGCCCGGGATGT
CTCGCGCCTCCATGGTCGCCGCGCGTCTCATGCTAGCGACAACGCGACCT
GTGAAGCGGAACGTCCGCTACCCACGAACCCAAACCCGAAAACGAATTAC
CCCTGCTATCAGCTGAGAGGGGATGGGAAACCTGCCGTTCGATCGTTCGG
GCAGTACATGTAGCGATAGTTTTCATCTCGCCACGGTTTGTTCCGACATA
TCCGTCACGGAAGAGCACCCTCGCCATTCAGTACGTCGCTGCTGATGGGT
CTCAACACCTAGTATCTGCCTTTAAATAGCACCACACCACACATGGATGT
GCGCTACACACTTTTTGTGGTCGGCCGCTTTCAAGAAATTTTCGGAAGAA
GGAAGACCGCGTGGAGCATTGCCTCTTGAGGAAAGATGCAAAGAAACATG
CGTGTGAATTTTTGTGGCTCCTCCGGACGGGTGTGCTACCATTTGAATGG
TAATTGTCCTACACGTCTCGGCGATCGATAAAGACACGCTACAAGGTATA
TTACGTATTACGTCGTGCCTATTTTCGATACGTCTCCTCCTGTTGTATGT
GTTCCTGGAAGCGTCCAACGGCTACGTGCGGTTCTTCTCCTTTTCCAGCG
GAGATCGCAACGGTTTTTAATGCAACACGACCATACAACAACACCACCAA
CTTGCATTCCGCTACATCAGTTCGTTTGACACCCGTCTACGTTCGCCTCT
ACATTCGCCGCTTGGTATCCTCTACTGCTACACTACCCTTGTGCTGACGT
GCGGGTTAAGCGCAGCCCACCACCACCCAAGGGCGGCGGGCGGAGCCCGC
TAGTATCGTATGGGGTAATGAACTCTCATCCTCATCATCGGTACAGAATT
CTCCCTGTGGGCCCATGCTGCTGTGCAAGTTATTGTCCCAATTAGCTGCC
TGCATGTAGCGCACAACAGCGAAGCTCTTATGCCTATGAGCTTCCATAAA
CGGAACAACTGCCTGAACCTTCCTAGGTGTCGGCCATCAAGTACTGCACC
CGGGTGGAGAAGAACTGGATGGTGGCCATGGGCCTCCTCAACGAGCAGCC
GCACAAGCTGGAGGAGTACGTCGCCCTCAAGTTCGAGATGAAAACCTTTG
AGAAAAGGTTTGCGAGAGCGACCGTCCTGACGGAGAAGCTGGAGCTACAG
TCGCAGTGGGAGAAGTACTGCGCCATGGAGCCAATGTACGAGAAGGCAAG
CACAGCCGGTTTATGGTCGTTCTGGAGTACCTCACACGCCACACTCTGCC
GGGTTGTCCCACTCCCGCACATCTTCAAGCTGGACTTTTTGTCTTGTGTT
TACCTTCCGAGTGAAGTCATTGTCAAATTATGCCGAATGTTTCCTCCAGA
TTCTTGCGGCCAAGGAACAGTGCGATCTTGTCAAGGTGGACAGGGAACAG
GCTCAGGCCGACGTGCTCGCCCACGGCCGGACCATGGCCAAGCTCAAGCG
CGAAGAAGTGGAGGCGGCGGAGAAAATTACGGACGACCACGTCCACGCGT
GCGACCGTGGAAAGTCCCTGGGCGACATTTTTCCGAGCATAAGGGCAAGC
AAGAGAAACTATTTGACACCGCGGCATACGGATTGTTTCGATTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig97:31363..34207+

>mRNA_Ecto-sp13_S_contig97.21336.1 ID=mRNA_Ecto-sp13_S_contig97.21336.1|Name=mRNA_Ecto-sp13_S_contig97.21336.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=750bp|location=Sequence derived from alignment at Ecto-sp13_S_contig97:31363..34207+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTCAATCTATTATAGCGAAGAAGCCTGTGGCGACCCATCCAGATAT
GTGTATCGAGAGCCTTCCACGTAGGCCGCACGTCGTCACGTTCGACAACG
CACTCTTAGCCCTCAAGCTCGCTCCCGGGGCGAGGGGAAGAGGCGCAGTC
CTCGACGGCTGGACCGATCCTATCGGGGCGCACGATCAGAAAGTCATTGA
GGTCGAGCAGGCCATGCTCCAGGAGAAGGAGTTGGTGTCGGCCATCAAGT
ACTGCACCCGGGTGGAGAAGAACTGGATGGTGGCCATGGGCCTCCTCAAC
GAGCAGCCGCACAAGCTGGAGGAGTACGTCGCCCTCAAGTTCGAGATGAA
AACCTTTGAGAAAAGGTTTGCGAGAGCGACCGTCCTGACGGAGAAGCTGG
AGCTACAGTCGCAGTGGGAGAAGTACTGCGCCATGGAGCCAATGTACGAG
AAGGCAAGCACAGCCGTGAAGTCATTGTCAAATTATGCCGAATGTTTCCT
CCAGATTCTTGCGGCCAAGGAACAGTGCGATCTTGTCAAGGTGGACAGGG
AACAGGCTCAGGCCGACGTGCTCGCCCACGGCCGGACCATGGCCAAGCTC
AAGCGCGAAGAAGTGGAGGCGGCGGAGAAAATTACGGACGACCACGTCCA
CGCGTGCGACCGTGGAAAGTCCCTGGGCGACATTTTTCCGAGCATAAGGG
CAAGCAAGAGAAACTATTTGACACCGCGGCATACGGATTGTTTCGATTGA
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