mRNA_Ecto-sp13_S_contig9679.21313.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9679.21313.1
Unique NamemRNA_Ecto-sp13_S_contig9679.21313.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9679.21313.1 vs. uniprot
Match: A0A6H5K7A9_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7A9_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.940e-20
Identity = 72/86 (83.72%), Postives = 73/86 (84.88%), Query Frame = 1 
Query:    1 GDLAAVSEPEGCLVAEDDPSRRPSGAVGTVAAGMAGGTAXXXXXXXXXXXXXXXXXXXXXXVASAAVRERTGVCGGPAPAWDSERW 258
            GDLA VSEPEGCLVAEDDP RRPSGAV TVAAG+AGGT XXXXXXXXXXXXXXXXX         AVRERTGVCGGPAPAWDSERW
Sbjct:  892 GDLAVVSEPEGCLVAEDDPLRRPSGAVRTVAAGIAGGTXXXXXXXXXXXXXXXXXXE--------AVRERTGVCGGPAPAWDSERW 969
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9679.21313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7A9_9PHAE2.940e-2083.72Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9679contigEcto-sp13_S_contig9679:4932..5694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size763
Hectar predicted targeting categoryother localisation
Exons1
Cds size492
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464231.591706-UTR-Ecto-sp13_S_contig9679:4931..51851681464231.591706-UTR-Ecto-sp13_S_contig9679:4931..5185Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9679 4932..5185 +
1681464231.6272752-UTR-Ecto-sp13_S_contig9679:5677..56941681464231.6272752-UTR-Ecto-sp13_S_contig9679:5677..5694Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9679 5678..5694 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464231.6137626-CDS-Ecto-sp13_S_contig9679:5185..56771681464231.6137626-CDS-Ecto-sp13_S_contig9679:5185..5677Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9679 5186..5677 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9679.21313.1prot_Ecto-sp13_S_contig9679.21313.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9679 5186..5677 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9679.21313.1

>prot_Ecto-sp13_S_contig9679.21313.1 ID=prot_Ecto-sp13_S_contig9679.21313.1|Name=mRNA_Ecto-sp13_S_contig9679.21313.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=164bp
MVTWKRADGVSLSGGPNRNATTFGPTIESCSPPPPAPGRQASAFFTLRVC
VFAEGRRRSSSRGCGEHCHGLGERERGLCLFCVCWGAGGGGGGWLRGIEN
TRERRRRGVHPVTLSENETELLVVIENLGSVPGGTPRRQPAPKERSSFLC
VFFCGERGFYGGA*
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mRNA from alignment at Ecto-sp13_S_contig9679:4932..5694+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9679.21313.1 ID=mRNA_Ecto-sp13_S_contig9679.21313.1|Name=mRNA_Ecto-sp13_S_contig9679.21313.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=763bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9679:4932..5694+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGACCTCGCTGCGGTGAGCGAGCCGGAAGGCTGCTTGGTGGCCGAGGA
CGACCCGTCGCGAAGACCATCGGGAGCGGTCGGGACGGTGGCGGCGGGGA
TGGCGGGGGGCACAGCTACTACGGCCGAAGCAGCGGCGGTAGCGGCAGCG
GCAGCGGCGGCAGCGGCAGCGGCGGCGGAGGCGGTGGCGTCCGCGGCGGT
GCGGGAGAGAACGGGCGTGTGCGGCGGGCCCGCCCCAGCGTGGGATTCGG
AAAGATGGTGACGTGGAAAAGGGCCGATGGCGTCTCTCTCTCGGGTGGAC
CAAACCGTAACGCCACGACCTTCGGGCCCACGATTGAAAGTTGTTCCCCC
CCGCCCCCCGCCCCCGGTAGACAAGCGAGCGCTTTCTTCACTCTTCGTGT
GTGCGTCTTTGCGGAGGGAAGGAGGCGGTCATCATCGCGTGGATGTGGCG
AACATTGTCATGGGTTAGGCGAGAGAGAGAGGGGTTTGTGTCTGTTTTGT
GTTTGTTGGGGGGCCGGGGGGGGAGGGGGGGGGTGGTTACGCGGAATAGA
GAACACACGGGAGAGGAGGAGGAGAGGGGTACATCCGGTCACCTTGTCGG
AAAACGAGACGGAGTTGTTGGTTGTGATCGAAAACTTGGGTTCCGTGCCA
GGAGGGACTCCCCGGAGGCAGCCGGCCCCGAAAGAGCGGTCTTCGTTCTT
GTGCGTTTTTTTTTGTGGGGAGCGTGGGTTTTACGGCGGTGCTTAGGGGG
CGACGGCGAAGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9679:4932..5694+

>mRNA_Ecto-sp13_S_contig9679.21313.1 ID=mRNA_Ecto-sp13_S_contig9679.21313.1|Name=mRNA_Ecto-sp13_S_contig9679.21313.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=492bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9679:4932..5694+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGACGTGGAAAAGGGCCGATGGCGTCTCTCTCTCGGGTGGACCAAA
CCGTAACGCCACGACCTTCGGGCCCACGATTGAAAGTTGTTCCCCCCCGC
CCCCCGCCCCCGGTAGACAAGCGAGCGCTTTCTTCACTCTTCGTGTGTGC
GTCTTTGCGGAGGGAAGGAGGCGGTCATCATCGCGTGGATGTGGCGAACA
TTGTCATGGGTTAGGCGAGAGAGAGAGGGGTTTGTGTCTGTTTTGTGTTT
GTTGGGGGGCCGGGGGGGGAGGGGGGGGGTGGTTACGCGGAATAGAGAAC
ACACGGGAGAGGAGGAGGAGAGGGGTACATCCGGTCACCTTGTCGGAAAA
CGAGACGGAGTTGTTGGTTGTGATCGAAAACTTGGGTTCCGTGCCAGGAG
GGACTCCCCGGAGGCAGCCGGCCCCGAAAGAGCGGTCTTCGTTCTTGTGC
GTTTTTTTTTGTGGGGAGCGTGGGTTTTACGGCGGTGCTTAG
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