prot_Ecto-sp13_S_contig9675.21305.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9675.21305.1
Unique Nameprot_Ecto-sp13_S_contig9675.21305.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length641
Homology
BLAST of mRNA_Ecto-sp13_S_contig9675.21305.1 vs. uniprot
Match: D7FGW0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW0_ECTSI)

HSP 1 Score: 535 bits (1377), Expect = 9.460e-180
Identity = 479/651 (73.58%), Postives = 490/651 (75.27%), Query Frame = 0
Query:    1 DAPNNNKRHPALAPFLPKSLITKKIPAPHPEDVERTKKAAAEDAKKGELCIICQEALPDIERGIIACGHTFCFGCILTWSCKNGDSVLCPSCRVPFNKIKKTLSPKDMEKEKLRNERDXXXXXXXXXXXXXXXRRAARVTQPVDKIFVKDVRVRKMSKKKKAIEEARTLHPDAAGGSMNAGQQAMLRARQLAIEAVTVERQAALTASRARREAELXXXXXATLNAARERQRLARKALAEAQARQAAGTRARFVAAAKARAEQRGASPGVVSEWWESVAAAAAAPXXXXXXXXXXXAGPP----------SGATATRGPRMRYTVPGFTNNSIMGRGRSFASAAEAATFSAGXXXXXXXXXXXXXXXXXXXXXXEPVRFSNSSILPISTPRGLAIATAAAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAERLRAQRRATERSGRLGEEEXXXXXXXXXXQQHELSLERTMAAVHATAARRELASLTQEAERLRAQRRAADRSRRLGEVEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEPSRMDLLARLAGLEEPMPARRAAAASATSLNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------TEVVRAAPTWVSPRRRVSEVVATWLANAGG 631
            DAPNNNKRHPALAPFLPKSLITKKIPAPHPEDVERT+KAAA+DAKKGELCIIC EALPDIERGIIACGHTFCFGCI  W+   GDS LCPSCR PFNKIKKTLSPKD+EKEKLRNERDXXXXXXXXXXXXXXX RAARV QPVDKIFVKDVRVRKMSKKK+AIEEART+HP+AAGGSMNAGQQAMLRAR                          XXXXX                                  A KARAEQRGASPGVVSEWW+SVAAAAAAP XXXXXXXXXX              SGA ATRGPRMRYTV GF NNSIMGRGRSFASAAEAA FSA                       EPVRFSNSSILPISTPRGLAIATA A  XXXXXXXXXXXXXXXXXXXXXX              RLRAQRRATERSGRLGEE XXXXXXXXXX    LSLERTMAAV+A AARR LAS+T EAERLRAQRRAADRSRRLGEVEE XXXXXXXXXXXXXXXXXXXXXXXXXXX E PSRMDLLARLAGLEE MPARRAA  +A SLNS   XXXXXXXXXXXXXXXXXXXXXXXXXXXX          TEVVRAAPTW SPR RVSE VATWLANAGG
Sbjct:    9 DAPNNNKRHPALAPFLPKSLITKKIPAPHPEDVERTRKAAADDAKKGELCIICLEALPDIERGIIACGHTFCFGCIHDWASNRGDSALCPSCRFPFNKIKKTLSPKDIEKEKLRNERDXXXXXXXXXXXXXXXXRAARVKQPVDKIFVKDVRVRKMSKKKQAIEEARTVHPEAAGGSMNAGQQAMLRARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVKARAEQRGASPGVVSEWWDSVAAAAAAPAXXXXXXXXXXXXXXXXXXXXXXXXSGAAATRGPRMRYTVAGFANNSIMGRGRSFASAAEAAAFSASRASYAAAA--------------EPVRFSNSSILPISTPRGLAIATATAXXXXXXXXXXXXXXXXXXXXXXXX--------------RLRAQRRATERSGRLGEEXXXXXXXXXXXXXXXLSLERTMAAVNAAAARRALASITLEAERLRAQRRAADRSRRLGEVEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVPSRMDLLARLAGLEERMPARRAAPGAA-SLNSSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEVVRAAPTWGSPRHRVSEAVATWLANAGG 630          
BLAST of mRNA_Ecto-sp13_S_contig9675.21305.1 vs. uniprot
Match: A0A6H5L829_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L829_9PHAE)

HSP 1 Score: 444 bits (1141), Expect = 3.530e-146
Identity = 393/643 (61.12%), Postives = 407/643 (63.30%), Query Frame = 0
Query:    1 DAPNNNKRHPALAPFLPKSLITKKIPAPHPEDVERTKKAAAEDAKKGELCIICQEALPDIERGIIACGHTFCFGCILTWSCKNGDSVLCPSCRVPFNKIKKTLSPKDMEKEKLRNERDXXXXXXXXXXXXXXXRRAARVTQPVDKIFVKDVRVRKMSKKKKAIEEARTLHPDAAGGSMNAGQQAMLRARQLAIEAVTVERQAALTASRARREAELXXXXXATLNAARERQRLARKALAEAQARQAAGTRARFVAAAKARAEQRGASPGVVSEWWESVAAAAAAPXXXXXXXXXXXAGPPSGATATRGPRMRYTVPGFTNNSIMGRGRSFASAAEAATFSAGXXXXXXXXXXXXXXXXXXXXXXEPVRFSNSSILPISTPRGLAIATAAAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAERLRAQRRATERSGRLGEEEXXXXXXXXXXQQHELSLERTMAAVHATAARRELASLTQEAERLRAQRRAADRSRRLGEVEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXEE----PSRMDLLARLAGLEEPMPARRAAAASATSLNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEVVRAAPTWVSPRRRVSEVVATWLANAGGDGGXXGSS 639
            DAP NNKRHPALAP LPKSLITKKIPAPHPEDVERTKKAAA+DAKKGELCIICQEALPDIERGIIACGHTFCFGCI TWS ++GDSVLCPSCRVPFNKIKKTLSPKD+EKEKLRNE                          VDKIFVKD+RVRKMSKKKKAIEEARTLHPDAAGGSMNAGQQAMLRARQLAIE                     XXXXX                                    K RAEQRGASPGVVS+WW+SVAAAAA P XXX                     +R   P              A A  AA                           EPVRFSNSSILPISTPRGLAIA      XXXXXXXXXXXXXXXXXXXXXXXX                    T RSGRLGEEEXXXXXXXXXX   ELSLERTMAAVHATAARRELAS+TQ AERLRAQRRAADRSRRL EVE+E       XXXXXXXXXXXXXXXXXXXXX      PSRMDLLARLAGLEEPMPARRAA A++ S +                       XXXXXXXXXTEVV  APTWVSPRRR+SE VATWLANAGG  G  GSS
Sbjct:    9 DAPTNNKRHPALAPVLPKSLITKKIPAPHPEDVERTKKAAADDAKKGELCIICQEALPDIERGIIACGHTFCFGCIHTWSSRSGDSVLCPSCRVPFNKIKKTLSPKDVEKEKLRNE--------------------------VDKIFVKDIRVRKMSKKKKAIEEARTLHPDAAGGSMNAGQQAMLRARQLAIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKTRAEQRGASPGVVSDWWDSVAAAAATPAXXXA--------------------VRAATP--------------AVATPAAD--------------------------EPVRFSNSSILPISTPRGLAIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------TARSGRLGEEEXXXXXXXXXXXXXELSLERTMAAVHATAARRELASITQVAERLRAQRRAADRSRRLEEVEKEERSLQREXXXXXXXXXXXXXXXXXXXXXXXXXAVPSRMDLLARLAGLEEPMPARRAADATSASPS------ISATAGVTRSATRNTRSXXXXXXXXXTEVVTVAPTWVSPRRRLSEAVATWLANAGGGDGGSGSS 539          
BLAST of mRNA_Ecto-sp13_S_contig9675.21305.1 vs. uniprot
Match: D7FGV7_ECTSI (Similar to PHD finger family protein, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV7_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.710e-15
Identity = 65/199 (32.66%), Postives = 87/199 (43.72%), Query Frame = 0
Query:    4 NNNKRHPALAPFLPKSLITKKIPAPHPEDVERTKKAAAEDAKKGE--------------------LCIICQEALPDIERGIIACGHTFCFGCILTWSCKNGDSVLCPSCRVPFNKIKKTLSPKDMEKEKLRNERDXXXXXXXXXXXXXXXRRA----ARVTQPVDKIFVKDVRVRKMSKKKKAIEEARTLHPDAAGGSM 178
            N +K  P LAP   +S +T+  P P  E + RT+  + E                          +C IC + LP++ERG+++CGH FCF CI  W+ KN  S +CP CRV   +I KTLSP D  K K    +                +RA    +R   P      K VRVR  S K    ++    HP A GG M
Sbjct:  111 NGSKNQPTLAPTPDQSEVTRTAPLPE-ELIARTEGVSKEXXXXXXXXXXXXXXXXXXXXXXXXXXMCAICCDKLPNLERGVLSCGHVFCFACIHQWT-KN--SSICPGCRVQIKRITKTLSPADEAKAKGETRKPVVSQRGMKKKPRKQLKRARHRDSRAKNPASGFVTKTVRVRPKSLKMTPAQQRAAPHPQARGGWM 305          
BLAST of mRNA_Ecto-sp13_S_contig9675.21305.1 vs. uniprot
Match: A0A6H5K2A7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A7_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 7.060e-15
Identity = 52/128 (40.62%), Postives = 70/128 (54.69%), Query Frame = 0
Query:    4 NNNKRHPALAPFLPKSLITKKIPAPHPEDVERTKKAAAED-AKKGE------------------LCIICQEALPDIERGIIACGHTFCFGCILTWSCKNGDSVLCPSCRVPFNKIKKTLSPKDMEKEK 112
            N NK  P LAP   +S +T+  P P  E + RT+  + E+ A++ E                  +C IC + LPD+ERG+++CGH FCF CI  W+ KN  S +CP CRV   +I KTLSP D  K K
Sbjct:   16 NGNKNQPTLAPTPDQSEVTRTAPLPE-ELIARTEGVSKEEEARRVERAXXXXXXXXXXXXXXXXMCAICCDKLPDLERGVLSCGHVFCFACIHQWT-KN--SSICPGCRVQIKRITKTLSPADEAKSK 139          
BLAST of mRNA_Ecto-sp13_S_contig9675.21305.1 vs. uniprot
Match: D8LMP5_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP5_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 5.840e-10
Identity = 55/163 (33.74%), Postives = 78/163 (47.85%), Query Frame = 0
Query:   25 IPAPHPEDVERTKKAAAEDAKKGELCIICQEALPDIERGIIACGHTFCFGCILTWSCKNGDSVLCPSCRVPFNKIKKTLSPKD-MEKEKLRNERDXXXXXXXXXXXXXXXRRAARVTQPVDK--IFVKDVRVRKMSKKKKAIEEARTLHPDAAGGSMNAGQQA 184
            + A HP    RTK+   E       C ICQ+ LP+  RGI+ CGH FC  C+L W  K  +S  CP+CR     IKKTLS  + +EK   R                   +R + + +P  K  I  + +RV K   +++  + A   HP A GG ++A +QA
Sbjct:   36 VNAAHP----RTKRKNPEKVDDKARCPICQDLLPEENRGIVKCGHVFCLKCVLQWVKKQQNS--CPTCRAKVCHIKKTLSLAEALEKNANRK--------PLTKAQLKRTKRKSTIGKPFPKPDITTEKIRVHKKVSREQIRQNAMAPHPQAPGGFLHAQEQA 184          
BLAST of mRNA_Ecto-sp13_S_contig9675.21305.1 vs. uniprot
Match: A0A6H5JQU9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQU9_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 4.100e-9
Identity = 60/185 (32.43%), Postives = 88/185 (47.57%), Query Frame = 0
Query:   35 RTKKAAAEDAKKGELCIICQEALPDIERGIIACGHTFCFGCILTWSCKNGDSVLCPSCRVPFNKIKKTLSP-----KDMEKEKLRNERDXXXXXXXXXXXXXXXRRAAR--VTQPVDKIFVKDVRVRKMSKKKKAIEEARTLHPDAAGGSMNAGQQ---------AMLRARQLAIEAVTVERQAA 203
            RT++   E    G+ C ICQ+ LP+  RGI+ CGH FC  C+L W  K  +S  CP+CR     IK+TLS      K+ +++  R  +                 R +   V Q    I  + +RVRK   +++  + A   HP A GG ++A +Q         AM  A+Q  +EA+ V RQ A
Sbjct:   66 RTRRKNPEKDDDGDRCPICQDLLPEENRGILKCGHVFCLKCVLQWVKKQQNS--CPTCRAEVCHIKRTLSSAEALEKNADRKPPRKAQLKRAKRKSAVGKPSPGDRYSESDVLQQKPDITTEKIRVRKKVSREQIRQNATAPHPQAPGGFLHAQEQTEAAAEAAQAMPDAQQDQVEAI-VNRQVA 247          
BLAST of mRNA_Ecto-sp13_S_contig9675.21305.1 vs. uniprot
Match: A0A836CLS4_9STRA (RING-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLS4_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.920e-6
Identity = 25/50 (50.00%), Postives = 32/50 (64.00%), Query Frame = 0
Query:   50 CIICQEALPDIERGIIACGHTFCFGCILTWSCKNGDSVLCPSCRVPFNKI 99
            C IC + LP  ERG + CGHTFCFGCI++WS +      CP C+  F+ I
Sbjct:    7 CSICLDQLPS-ERGTLQCGHTFCFGCIVSWSERQNT---CPLCQGRFDSI 52          
BLAST of mRNA_Ecto-sp13_S_contig9675.21305.1 vs. uniprot
Match: A0A0G4GPQ0_VITBC (RING-type domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GPQ0_VITBC)

HSP 1 Score: 58.5 bits (140), Expect = 6.620e-6
Identity = 24/54 (44.44%), Postives = 36/54 (66.67%), Query Frame = 0
Query:   46 KGELCIICQEALPDIERGIIACGHTFCFGCILTWSCKNGDSVLCPSCRVPFNKI 99
            +GELC +CQ+ L   + G +AC H+FC+ CIL+W+ +   +  CP CR  F+KI
Sbjct:   85 EGELCSVCQQTLSVCDVGSLACAHSFCYRCILSWARRG--TTQCPVCRATFDKI 136          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9675.21305.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FGW0_ECTSI9.460e-18073.58RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L829_9PHAE3.530e-14661.12RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FGV7_ECTSI1.710e-1532.66Similar to PHD finger family protein, partial n=1 ... [more]
A0A6H5K2A7_9PHAE7.060e-1540.63RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LMP5_ECTSI5.840e-1033.74RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JQU9_9PHAE4.100e-932.43RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A836CLS4_9STRA3.920e-650.00RING-type domain-containing protein (Fragment) n=1... [more]
A0A0G4GPQ0_VITBC6.620e-644.44RING-type domain-containing protein n=1 Tax=Vitrel... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 223..243
NoneNo IPR availableCOILSCoilCoilcoord: 472..499
NoneNo IPR availableCOILSCoilCoilcoord: 412..439
NoneNo IPR availableCOILSCoilCoilcoord: 502..522
NoneNo IPR availableCOILSCoilCoilcoord: 110..130
NoneNo IPR availablePANTHERPTHR46563FAMILY NOT NAMEDcoord: 33..129
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 42..103
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 50..92
e-value: 4.8E-4
score: 29.4
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 50..93
e-value: 1.7E-6
score: 28.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 50..93
score: 12.799
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 26..142
e-value: 9.6E-12
score: 46.7
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 67..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9675contigEcto-sp13_S_contig9675:1192..6214 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9675.21305.1mRNA_Ecto-sp13_S_contig9675.21305.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9675 1192..6214 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9675.21305.1 ID=prot_Ecto-sp13_S_contig9675.21305.1|Name=mRNA_Ecto-sp13_S_contig9675.21305.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=641bp
DAPNNNKRHPALAPFLPKSLITKKIPAPHPEDVERTKKAAAEDAKKGELC
IICQEALPDIERGIIACGHTFCFGCILTWSCKNGDSVLCPSCRVPFNKIK
KTLSPKDMEKEKLRNERDKKRKNTTKKQRNRMRRRAARVTQPVDKIFVKD
VRVRKMSKKKKAIEEARTLHPDAAGGSMNAGQQAMLRARQLAIEAVTVER
QAALTASRARREAELRAQHEATLNAARERQRLARKALAEAQARQAAGTRA
RFVAAAKARAEQRGASPGVVSEWWESVAAAAAAPAAPAAAAPAPAAGPPS
GATATRGPRMRYTVPGFTNNSIMGRGRSFASAAEAATFSAGHASHAAAEA
AAAAAESAAAAPAEPVRFSNSSILPISTPRGLAIATAAAARSAAAAAAAA
ATAAAAAAARRAAAAARRAAVAAQEAERLRAQRRATERSGRLGEEEEQER
SHQREQQQHELSLERTMAAVHATAARRELASLTQEAERLRAQRRAADRSR
RLGEVEEEERSLQRERQQEEARRGGVDNEAAAVAAAEEPSRMDLLARLAG
LEEPMPARRAAAASATSLNSSASPSISATARVTRSVTRNTRSSSSSASAT
ATEVVRAAPTWVSPRRRVSEVVATWLANAGGDGGGGGSSA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS